arXiv subjects

Linnéa Gyllingberg

Publications and source records attributed to Linnéa Gyllingberg.

6 recordsLinked to original sources

arXiv2025

A bibliometric study on mathematical oncology: interdisciplinarity, internationality, collaboration and trending topics

Mathematical oncology is an interdisciplinary research field where the mathematical sciences meet cancer research. Being situated at the intersection of these two fields makes mathematical oncology highly dynamic, as practicing researchers are incentivised to quickly adapt to both technical and medical research advances. Determining the scope of mathematical oncology is therefore not straightforward; however, it is important for purposes related to funding allocation, education, scientific communication, and community organisation. To address this issue, we here conduct a bibliometric analysis of mathematical oncology. We compare our results to the broader field of mathematical biology, and position our findings within theoretical science of science frameworks. Based on article metadata and citation flows, our results provide evidence that mathematical oncology has undergone a significant evolution since the 1960s marked by increased interactions with other disciplines, geographical expansion, larger research teams, and greater diversity in studied topics. The latter finding contributes to the greater discussion on which models different research communities consider to be valuable in the era of big data and machine learning. Further, the results presented in this study quantitatively motivate that international collaboration networks should be supported to enable new countries to enter and remain in the field, and that mathematical oncology benefits both mathematics and the life sciences.

physics.soc-ph↗

arXiv2025

Cognition without neurons: modelling anticipation in a basal reservoir computer

How do non-neural organisms, such as the slime mould \textit{Physarum polycephalum}, anticipate periodic events in their environment? We present a minimal, biologically inspired reservoir model that demonstrates simple temporal anticipation without neurons, spikes, or trained readouts. The model consists of a spatially embedded hexagonal network in which nodes regulate their energy through local, allostatic adaptation. Input perturbations shape energy dynamics over time, allowing the system to internalize temporal regularities into its structure. After being exposed to a periodic input signal, the model spontaneously re-enacts those dynamics even in the absence of further input -- a form of unsupervised temporal pattern completion. This behaviour emerges from internal homeodynamic regulation, without supervised learning or symbolic processing. Our results show that simple homeodynamic regulation can support unsupervised prediction, suggesting a pathway to memory and anticipation in basal organisms.

q-bio.NC↗

arXiv2024

A minimal model of cognition based on oscillatory and current-based reinforcement processes

Building mathematical models of brains is difficult because of the sheer complexity of the problem. One potential starting point is through basal cognition, which gives abstract representation of a range of organisms without central nervous systems, including fungi, slime moulds and bacteria. We propose one such model, demonstrating how a combination of oscillatory and current-based reinforcement processes can be used to couple resources in an efficient manner, mimicking the way these organisms function. A key ingredient in our model, not found in previous basal cognition models, is that we explicitly model oscillations in the number of particles (i.e. the nutrients, chemical signals or similar, which make up the biological system) and the flow of these particles within the modelled organisms. Using this approach, we find that our model builds efficient solutions, provided the environmental oscillations are sufficiently out of phase. We further demonstrate that amplitude differences can promote efficient solutions and that the system is robust to frequency differences. In the context of these findings, we discuss connections between our model and basal cognition in biological systems and slime moulds, in particular, how oscillations might contribute to self-organised problem-solving by these organisms.

q-bio.NC↗

arXiv2023

The Lost Art of Mathematical Modelling

We provide a critique of mathematical biology in light of rapid developments in modern machine learning. We argue that out of the three modelling activities -- (1) formulating models; (2) analysing models; and (3) fitting or comparing models to data -- inherent to mathematical biology, researchers currently focus too much on activity (2) at the cost of (1). This trend, we propose, can be reversed by realising that any given biological phenomena can be modelled in an infinite number of different ways, through the adoption of an open/pluralistic approach. We explain the open approach using fish locomotion as a case study and illustrate some of the pitfalls -- universalism, creating models of models, etc. -- that hinder mathematical biology. We then ask how we might rediscover a lost art: that of creative mathematical modelling. This article is dedicated to the memory of Edmund Crampin.

q-bio.OT↗

arXiv2023

Using neuronal models to capture burst and glide motion and leadership in fish

While mathematical models, in particular self-propelled particle (SPP) models, capture many of the observed properties of large fish schools, they do not always capture the interactions of smaller shoals. Nor do these models tend to account for the observation that, when swimming alone or in smaller groups, many species of fish use intermittent locomotion, often referred to as burst and coast or burst and glide. Recent empirical studies have suggested that burst and glide movement is indeed pivotal to the social interactions of individual fish. In this paper, we propose a model of social burst and glide motion by combining a well-studied model of neuronal dynamics, the FitzHugh-Nagumo model, with a model of fish motion. We begin by showing that the model can capture the motion of a single fish swimming down a channel. By then extending to a two fish model, where visual stimuli of the position of the other fish affect the internal burst or glide state of the fish, we find that our model captures a rich set of swimming dynamics found in many species of fish. These include: leader-follower behaviour; periodic changes in leadership; apparently random (i.e. chaotic) leadership change; and pendulum-like tit-for-tat turn taking. Unlike SPP models, which assume that fish move at a constant speed, the model produces realistic motion of individual fish. Moreover, unlike previous studies where a random component is used for leadership switching to occur, we show that leadership switching, both periodic and chaotic, can be the result of a deterministic interaction. We give several empirically testable predictions on how fish interact and discuss our results in light of recently established correlations between fish locomotion and brain activity.

q-bio.NC↗

arXiv2023

Finding analytical approximations for discrete, stochastic, individual-based models of ecology

Discrete time, spatially extended models play an important role in ecology, modelling population dynamics of species ranging from micro-organisms to birds. An important question is how 'bottom up', individual-based models can be approximated by 'top down' models of dynamics. Here, we study a class of spatially explicit individual-based models with contest competition: where species compete for space in local cells and then disperse to nearby cells. We start by describing simulations of the model, which exhibit large-scale discrete oscillations and characterise these oscillations by measuring spatial correlations. We then develop two new approximate descriptions of the resulting spatial population dynamics. The first is based on local interactions of the individuals and allows us to give a difference equation approximation of the system over small dispersal distances. The second approximates the long-range interactions of the individual-based model. These approximations capture demographic stochasticity from the individual-based model and show that dispersal stabilizes population dynamics. We calculate extinction probability for the individual-based model and show convergence between the local approximation and the non-spatial global approximation of the individual-based model as dispersal distance and population size simultaneously tend to infinity. Our results provide new approximate analytical descriptions of a complex bottom-up model and deepen understanding of spatial population dynamics.

q-bio.PE↗