arXiv subjects

Linnia Hawkins

Publications and source records attributed to Linnia Hawkins.

3 recordsLinked to original sources

arXiv2026

Systematic LLM Translation of Legacy Scientific Code to Differentiable Frameworks: Application to a Land Surface Model

Differentiable programming offers transformative capabilities for scientific modeling, enabling gradient-based parameter estimation, sensitivity analysis, and data assimilation. Yet, migrating legacy codebases into differentiable frameworks remains a challenge. We present a five-phase LLM-based agentic pipeline that translates legacy Fortran into JAX: static dependency analysis determines module translation order from the full call graph; iterative compile-repair loops correct errors autonomously; and a Fortran reference oracle enforces numerical parity at the module level before integration and gradient verification. We instantiate and evaluate the pipeline on CLM-ml-v2, a 19,000-line Fortran land surface model, and analyze agent behavior across 73 module translation tasks. The resulting differentiable model computes the complete Jacobian in a single backward pass, recovers physical parameters in eight times fewer steps than gradient-free optimization, and achieves a 24 times wall-clock speedup over sequential Fortran at ensemble size N=2,048. Both the translated model and pipeline infrastructure are released as a reusable framework for differentiating other Earth system model components.

cs.SE↗

arXiv2026

AutoClimDS: Climate Data Science Agentic AI -- A Knowledge Graph is All You Need

Climate data science remains constrained by fragmented data sources, heterogeneous formats, and steep technical expertise requirements. These barriers slow discovery, limit participation, and undermine reproducibility. We present AutoClimDS, a Minimum Viable Product (MVP) Agentic AI system that addresses these challenges by integrating a curated climate knowledge graph (KG) with a set of Agentic AI workflows designed for cloud-native scientific analysis. The KG unifies datasets, metadata, tools, and workflows into a machine-interpretable structure, while AI agents, powered by generative models, enable natural-language query interpretation, automated data discovery, programmatic data acquisition, and end-to-end climate analysis. A key result is that AutoClimDS can reproduce published scientific figures and analyses from natural-language instructions alone, completing the entire workflow from dataset selection to preprocessing to modeling. When given the same tasks, state-of-the-art general-purpose LLMs (e.g., ChatGPT GPT-5.1) cannot independently identify authoritative datasets or construct valid retrieval workflows using standard web access. This highlights the necessity of structured scientific memory for agentic scientific reasoning. By encoding procedural workflow knowledge into a KG and integrating it with existing technologies (cloud APIs, LLMs, sandboxed execution), AutoClimDS demonstrates that the KG serves as the essential enabling component, the irreplaceable structural foundation, for autonomous climate data science. This approach provides a pathway toward democratizing climate research through human-AI collaboration.

cs.AI↗

arXiv2024

Proof-of-concept: Using ChatGPT to Translate and Modernize an Earth System Model from Fortran to Python/JAX

Earth system models (ESMs) are vital for understanding past, present, and future climate, but they suffer from legacy technical infrastructure. ESMs are primarily implemented in Fortran, a language that poses a high barrier of entry for early career scientists and lacks a GPU runtime, which has become essential for continued advancement as GPU power increases and CPU scaling slows. Fortran also lacks differentiability - the capacity to differentiate through numerical code - which enables hybrid models that integrate machine learning methods. Converting an ESM from Fortran to Python/JAX could resolve these issues. This work presents a semi-automated method for translating individual model components from Fortran to Python/JAX using a large language model (GPT-4). By translating the photosynthesis model from the Community Earth System Model (CESM), we demonstrate that the Python/JAX version results in up to 100x faster runtimes using GPU parallelization, and enables parameter estimation via automatic differentiation. The Python code is also easy to read and run and could be used by instructors in the classroom. This work illustrates a path towards the ultimate goal of making climate models fast, inclusive, and differentiable.

cs.DC↗