arXiv subjects

Linus Seelinger

Publications and source records attributed to Linus Seelinger.

10 recordsLinked to original sources

arXiv2025

A Performance Analysis of Task Scheduling for UQ Workflows on HPC Systems

Uncertainty Quantification (UQ) workloads are becoming increasingly common in science and engineering. They involve the submission of thousands or even millions of similar tasks with potentially unpredictable runtimes, where the total number is usually not known a priori. A static one-size-fits-all batch script would likely lead to suboptimal scheduling, and native schedulers installed on High Performance Computing (HPC) systems such as SLURM often struggle to efficiently handle such workloads. In this paper, we introduce a new load balancing approach suitable for UQ workflows. To demonstrate its efficiency in a real-world setting, we focus on the GS2 gyrokinetic plasma turbulence simulator. Individual simulations can be computationally demanding, with runtimes varying significantly-from minutes to hours-depending on the high-dimensional input parameters. Our approach uses UQ and Modelling Bridge, which offers a language-agnostic interface to a simulation model, combined with HyperQueue which works alongside the native scheduler. In particular, deploying this framework on HPC systems does not require system-level changes. We benchmark our proposed framework against a standalone SLURM approach using GS2 and a Gaussian Process surrogate thereof. Our results demonstrate a reduction in scheduling overhead by up to three orders of magnitude and a maximum reduction of 38% in CPU time for long-running simulations compared to the naive SLURM approach, while making no assumptions about the job submission patterns inherent to UQ workflows.

cs.DC↗

arXiv2024

Democratizing Uncertainty Quantification

Uncertainty Quantification (UQ) is vital to safety-critical model-based analyses, but the widespread adoption of sophisticated UQ methods is limited by technical complexity. In this paper, we introduce UM-Bridge (the UQ and Modeling Bridge), a high-level abstraction and software protocol that facilitates universal interoperability of UQ software with simulation codes. It breaks down the technical complexity of advanced UQ applications and enables separation of concerns between experts. UM-Bridge democratizes UQ by allowing effective interdisciplinary collaboration, accelerating the development of advanced UQ methods, and making it easy to perform UQ analyses from prototype to High Performance Computing (HPC) scale. In addition, we present a library of ready-to-run UQ benchmark problems, all easily accessible through UM-Bridge. These benchmarks support UQ methodology research, enabling reproducible performance comparisons. We demonstrate UM-Bridge with several scientific applications, harnessing HPC resources even using UQ codes not designed with HPC support.

cs.MS↗

arXiv2023

Modeling and Quantifying Parameter Uncertainty of Co-seismic Non-classical Nonlinearity in Rocks

Dynamic perturbations reveal unconventional nonlinear behavior in rocks, as evidenced by field and laboratory studies. During the passage of seismic waves, rocks exhibit a decrease in elastic moduli, slowly recovering after.Yet, comprehensive physical models describing these moduli alterations remain sparse and insufficiently validated against observations. Here, we demonstrate the applicability of two physical damage models - the internal variable model (IVM) and the continuum damage model (CDM) - to provide quantitative descriptions of nonlinear co-seismic elastic wave propagation observations. We recast the IVM and CDM models as nonlinear hyperbolic partial differential equations and implement 1D and 2D numerical simulations using an arbitrary high-order discontinuous Galerkin method. We verify the modeling results with co-propagating acousto-elastic experimental measurements. We find that the IVM time series of P-wave speed changes correlate slightly better with observations, while the CDM better explains the peak damage delay relative to peak strain. Subsequently, we infer the parameters for these nonlinear models from laboratory experiments using probabilistic Bayesian inversion and 2D simulations. By adopting the Adaptive Metropolis Markov Chain Monte Carlo method, we quantify the uncertainties of inferred parameters for both physical models, investigating their interplay in 70,000 simulations. We find that the damage variables can trade off with the stress-strain nonlinearity in discernible ways. We discuss physical interpretations of both damage models and that our CDM quantitatively captures an observed damage increase with perturbation frequency. Our results contribute to a more holistic understanding of non-classical non-linear damage with implications for co-seismic damage and post-seismic recovery after earthquakes.

physics.geo-ph↗

arXiv2023

Lowering the Entry Bar to HPC-Scale Uncertainty Quantification

Treating uncertainties in models is essential in many fields of science and engineering. Uncertainty quantification (UQ) on complex and computationally costly numerical models necessitates a combination of efficient model solvers, advanced UQ methods and HPC-scale resources. The resulting technical complexities as well as lack of separation of concerns between UQ and model experts is holding back many interesting UQ applications. The aim of this paper is to close the gap between advanced UQ methods and advanced models by removing the hurdle of complex software stack integration, which in turn will offer a straightforward way to scale even prototype-grade UQ applications to high-performance resources. We achieve this goal by introducing a parallel software architecture based on UM-Bridge, a universal interface for linking UQ and models. We present three realistic applications from different areas of science and engineering, scaling from single machines to large clusters on the Google Cloud Platform.

cs.DC↗

arXiv2022

Scalable multiscale-spectral GFEM with an application to composite aero-structures

In this paper, the first large-scale application of multiscale-spectral generalized finite element methods (MS-GFEM) to composite aero-structures is presented. The crucial novelty lies in the introduction of A-harmonicity in the local approximation spaces, which in contrast to [Babuska, Lipton, Multiscale Model. Simul. 9, 2011] is enforced more efficiently via a constraint in the local eigenproblems. This significant modification leads to excellent approximation properties, which turn out to be essential to capture accurately material strains and stresses with a low dimensional approximation space, hence maximising model order reduction. The implementation of the framework in the DUNE software package, as well as a detailed description of all components of the method are presented and exemplified on a composite laminated beam under compressive loading. The excellent parallel scalability of the method, as well as its superior performance compared to the related, previously introduced GenEO method are demonstrated on two realistic application cases, including a C-shaped wing spar with complex geometry. Further, by allowing low-cost approximate solves for closely related models or geometries this efficient, novel technology provides the basis for future applications in optimisation or uncertainty quantification on challenging problems in composite aero-structures.

math.NA↗

arXiv2021

High Performance Uncertainty Quantification with Parallelized Multilevel Markov Chain Monte Carlo

Numerical models of complex real-world phenomena often necessitate High Performance Computing (HPC). Uncertainties increase problem dimensionality further and pose even greater challenges. We present a parallelization strategy for multilevel Markov chain Monte Carlo, a state-of-the-art, algorithmically scalable Uncertainty Quantification (UQ) algorithm for Bayesian inverse problems, and a new software framework allowing for large-scale parallelism across forward model evaluations and the UQ algorithms themselves. The main scalability challenge presents itself in the form of strong data dependencies introduced by the MLMCMC method, prohibiting trivial parallelization. Our software is released as part of the modular and open-source MIT UQ Library (MUQ), and can easily be coupled with arbitrary user codes. We demonstrate it using the DUNE and the ExaHyPE Engine. The latter provides a realistic, large-scale tsunami model in which identify the source of a tsunami from buoy-elevation data.

cs.MS↗

arXiv2021

Multilevel Spectral Domain Decomposition

Highly heterogeneous, anisotropic coefficients, e.g. in the simulation of carbon-fibre composite components, can lead to extremely challenging finite element systems. Direct solvers for the resulting large and sparse linear systems suffer from severe memory requirements and limited parallel scalability, while iterative solvers in general lack robustness. Two-level spectral domain decomposition methods can provide such robustness for symmetric positive definite linear systems, by using coarse spaces based on independent generalized eigenproblems in the subdomains. Rigorous condition number bounds are independent of mesh size, number of subdomains, as well as coefficient contrast. However, their parallel scalability is still limited by the fact that (in order to guarantee robustness) the coarse problem is solved via a direct method. In this paper, we introduce a multilevel variant in the context of subspace correction methods and provide a general convergence theory for its robust convergence for abstract, elliptic variational problems. Assumptions of the theory are verified for conforming, as well as for discontinuous Galerkin methods applied to a scalar diffusion problem. Numerical results illustrate the performance of the method for two- and three-dimensional problems and for various discretization schemes, in the context of scalar diffusion and linear elasticity.

math.NA↗

arXiv2019

A High-Performance Implementation of a Robust Preconditioner for Heterogeneous Problems

We present an efficient implementation of the highly robust and scalable GenEO preconditioner in the high-performance PDE framework DUNE. The GenEO coarse space is constructed by combining low energy solutions of a local generalised eigenproblem using a partition of unity. In this paper we demonstrate both weak and strong scaling for the GenEO solver on over 15,000 cores by solving an industrially motivated problem with over 200 million degrees of freedom. Further, we show that for highly complex parameter distributions arising in certain real-world applications, established methods become intractable while GenEO remains fully effective. The purpose of this paper is two-fold: to demonstrate the robustness and high parallel efficiency of the solver and to document the technical details that are crucial to the efficiency of the code.

cs.MS↗

arXiv2019

High-performance dune modules for solving large-scale, strongly anisotropic elliptic problems with applications to aerospace composites

The key innovation in this paper is an open-source, high-performance iterative solver for high contrast, strongly anisotropic elliptic partial differential equations implemented within dune-pdelab. The iterative solver exploits a robust, scalable two-level additive Schwarz preconditioner, GenEO (Spillane et al. 2014). The development of this solver has been motivated by the need to overcome the limitations of commercially available modeling tools for solving structural analysis simulations in aerospace composite applications. Our software toolbox dune-composites encapsulates the mathematical complexities of the underlying packages within an efficient C++ framework, providing an application interface to our new high-performance solver. We illustrate its use on a range of industrially motivated examples, which should enable other scientists to build on and extend dune-composites and the GenEO preconditioner for use in their own applications. We demonstrate the scalability of the solver on more than 15,000 cores of the UK national supercomputer Archer, solving an aerospace composite problem with over 200 million degrees of freedom in a few minutes. This scale of computation brings composites problems that would otherwise be unthinkable into the feasible range. To demonstrate the wider applicability of the new solver, we also confirm the robustness and scalability of the solver on SPE10, a challenging benchmark in subsurface flow/reservoir simulation.

math.NA↗

arXiv2017

dune-composites -- A New Framework for High-Performance Finite Element Modelling of Laminates

Finite element (FE) analysis has the potential to offset much of the expensive experimental testing currently required to certify aerospace laminates. However, large numbers of degrees of freedom are necessary to model entire aircraft components whilst accurately resolving micro-scale defects. The new module dune-composites, implemented within DUNE by the authors, provides a tool to efficiently solve large-scale problems using novel iterative solvers. The key innovation is a preconditioner that guarantees a constant number of iterations regardless of the problem size. Its robustness has been shown rigorously in Spillane et al. (Numer. Math. 126, 2014) for isotropic problems. For anisotropic problems in composites it is verified numerically for the first time in this paper. The parallel implementation in DUNE scales almost optimally over thousands of cores. To demonstrate this, we present an original numerical study, varying the shape of a localised wrinkle and the effect this has on the strength of a curved laminate. This requires a high-fidelity mesh containing at least four layers of quadratic elements across each ply and interface layer, underlining the need for dune-composites, which can achieve run times of just over 2 minutes on 2048 cores for realistic composites problems with 173 million degrees of freedom.

math.NA↗