arXiv subjects

Lorenzo Monacelli

Publications and source records attributed to Lorenzo Monacelli.

45 records · Page 3Linked to original sources

arXiv2019

Genome heterogeneity drives the evolution of species

Most of the DNA that composes a complex organism is non-coding and defined as junk. Even the coding part is composed of genes that affect the phenotype differently. Therefore, a random mutation has an effect on the specimen fitness that strongly depends on the DNA region where it occurs. Such heterogeneous composition should be linked to the evolutionary process. However, the way is still unknown. Here, we study a minimal model for the evolution of an ecosystem where two antagonist species struggle for survival on a lattice. Each specimen possesses a toy genome, encoding for its phenotype. The gene pool of populations changes in time due to the effect of random mutations on genes (entropic force) and of interactions with the environment and between individuals (natural selection). We prove that the relevance of each gene in the manifestation of the phenotype is a key feature for evolution. In the presence of a uniform gene relevance, a mutational meltdown is observed. Natural selection acts quenching the ecosystem in a non-equilibriumstate that slowly drifts, decreasing the fitness and leading to the extinction of the species. Conversely, if a specimen is provided with a heterogeneous gene relevance, natural selection wins against entropic forces, and the species evolves increasing its fitness. We finally show that heterogeneity together with spatial correlations is responsible for spontaneous sympatric speciation.

q-bio.PE↗

arXiv2019

Anharmonic melting of the charge density wave in single-layer TiSe2

Low dimensional systems with a vanishing band-gap and a large electron-hole interaction have been proposed to be unstable towards exciton formation. As the exciton binding energy increases in low dimension, conventional wisdom suggests that excitonic insulators should be more stable in 2D than in 3D. Here we study the effects of the electron-hole interaction and anharmonicity in single-layer TiSe2. We find that, contrary to the bulk case and to the generally accepted picture, the electron-hole exchange interaction is much smaller in 2D than in 3D and it has negligible effects on phonon spectra. By calculating anharmonic phonon spectra within the stochastic self-consistent harmonic approximation, we obtain TCDW = 440K for an isolated and undoped single-layer and TCDW = 364K for an electron-doping n = 4.6 x 10^13 cm^{-2} , close to the experimental result of 200-280K on supported samples. Our work demonstrates that anharmonicity and doping melt the charge density wave in single-layer TiSe2.

cond-mat.mtrl-sci↗

arXiv2019

Quantum Crystal Structure in the 250 K Superconducting Lanthanum Hydride

The discovery of superconductivity at 200 K in the hydrogen sulfide system at large pressures [1] was a clear demonstration that hydrogen-rich materials can be high-temperature superconductors. The recent synthesis of LaH$_{10}$ with a superconducting critical temperature (T$_{\text{c}}$) of 250 K [2,3] places these materials at the verge of reaching the long-dreamed room-temperature superconductivity. Electrical and x-ray diffraction measurements determined a weakly pressure-dependent T$_{\text{c}}$ for LaH$_{10}$ between 137 and 218 gigapascals in a structure with a face-centered cubic (fcc) arrangement of La atoms [3]. Here we show that quantum atomic fluctuations stabilize in all this pressure range a high-symmetry Fm-3m crystal structure consistent with experiments, which has a colossal electron-phonon coupling of $λ\sim3.5$. Even if ab initio classical calculations neglecting quantum atomic vibrations predict this structure to distort below 230 GPa yielding a complex energy landscape with many local minima, the inclusion of quantum effects simplifies the energy landscape evidencing the Fm-3m as the true ground state. The agreement between the calculated and experimental T$_{\text{c}}$ values further supports this phase as responsible for the 250 K superconductivity. The relevance of quantum fluctuations in the energy landscape found here questions many of the crystal structure predictions made for hydrides within a classical approach that at the moment guide the experimental quest for room-temperature superconductivity [4,5,6]. Furthermore, quantum effects reveal crucial to sustain solids with extraordinary electron-phonon coupling that may otherwise be unstable [7].

cond-mat.supr-con↗

arXiv2019

Quantum effects in muon spin spectroscopy within the stochastic self-consistent harmonic approximation

In muon spin rotation experiments the positive implanted muon vibrates with large zero point amplitude by virtue of its light mass. Quantum mechanical calculations of the host material usually treat the muon as a point impurity, ignoring this large vibrational amplitude. As a first order correction, the muon zero point motion is usually described within the harmonic approximation, despite the large anharmonicity of the crystal potential. Here we apply the stochastic self-consistent harmonic approximation, a quantum variational method devised to include strong anharmonic effects in total energy and vibrational frequency calculations, in order to overcome these limitations and provide an accurate ab initio description of the quantum nature of the muon. We applied this full quantum treatment to the calculation of the muon contact hyperfine field in textbook-case metallic systems, such as Fe, Ni, Co including MnSi and MnGe, significantly improving agreement with experiments. Our results show that muon vibrational frequencies are strongly renormalized by anharmonicity. Finally, in contrast to the harmonic approximation, we show that including quantum anharmonic fluctuations, the muon stabilizes at the octahedral site in bcc Fe.

cond-mat.mtrl-sci↗

arXiv2019

Strong anharmonicity and high thermoelectric efficiency in high temperature SnS from first-principles

SnS and SnSe are isoelectronic materials with a common phase diagram. Recently, SnSe was found to be the most efficient intrinsic thermoelectric material in its high-temperature Cmcm phase above 800 K. Making use of first-principles calculations, here we show that the electronic and vibrational properties of both materials are very similar in this phase and, consequently, SnS is also expected to have a high thermoelectric figure of merit at high temperature in its Cmcm phase. In fact, the electronic power factor and lattice thermal conductivity are comparable for both materials, which ensures a similar figure of merit. As in the case of SnSe, the vibrational properties of SnS in the Cmcm phase are far from trivial and are dominated by huge anharmonic effects. Its phonon spectra are strongly renormalized by anharmonicity and the spectral functions of some particular in-plane modes depict anomalous non-lorentzian profiles. Finally, we show that non-perturbative anharmonic effects in the third-order force-constants are crucial in the calculation of the lattice thermal conductivity. Our results motivate new experiments in the high temperature regime to measure the figure of merit of SnS.

cond-mat.mtrl-sci↗

arXiv2019

Quantum enhancement of charge density wave in NbS$_2$ in the 2D limit

At ambient pressure, bulk 2H-NbS$_2$ displays no charge density wave instability at odds with the isostructural and isoelectronic compounds 2H-NbSe$_2$, 2H-TaS$_2$ and 2H-TaSe$_2$, and in disagreement with harmonic calculations. Contradictory experimental results have been reported in supported single layers, as 1H-NbS$_2$ on Au(111) does not display a charge density wave, while 1H-NbS$_2$ on 6H-SiC(0001) endures a $3\times 3$ reconstruction. Here, by carrying out quantum anharmonic calculations from first-principles, we evaluate the temperature dependence of phonon spectra in NbS$_2$ bulk and single layer as a function of pressure/strain. For bulk 2H-NbS$_2$, we find excellent agreement with inelastic X-ray spectra and demonstrate the removal of charge ordering due to anharmonicity. In the 2D limit, we find an enhanced tendency toward charge density wave order. Freestanding 1H-NbS$_2$ undergoes a $3\times3$ reconstruction, in agreement with data on 6H-SiC(0001) supported samples. Moreover, as strains smaller than $0.5\%$ in the lattice parameter are enough to completely remove the $3\times3$ superstructure, deposition of 1H-NbS$_2$ on flexible substrates or a small charge transfer via field-effect could lead to devices with dynamical switching on/off of charge order.

cond-mat.mtrl-sci↗

arXiv2018

Entropy evaluation sheds light on ecosystem complexity

Preserving biodiversity and ecosystem stability is a challenge that can be pursued through modern statistical mechanics modeling. Here we introduce a variational maximum entropy-based algorithm to evaluate the entropy in a minimal ecosystem on a lattice in which two species struggle for survival. The method quantitatively reproduces the scale-free law of the prey shoals size, where the simpler mean-field approach fails: the direct near neighbor correlations are found to be the fundamental ingredient describing the system self-organized behavior. Furthermore, entropy allows the measurement of structural ordering, that is found to be a key ingredient in characterizing two different coexistence behaviors, one where predators form localized patches in a sea of preys and another where species display more complex patterns. The general nature of the introduced method paves the way for its application in many other systems of interest.

physics.bio-ph↗

arXiv2018

Phonon Collapse and Second-Order Phase Transition in Thermoelectric SnSe

Since 2014 the layered semiconductor SnSe in the high-temperature Cmcm phase is known to be the most efficient thermoelectric material. Making use of first-principles calculations we show that its vibrational and thermal transport properties are determined by huge non-perturbative anharmonic effects. We show that the transition from the Cmcm phase to the low-symmetry Pnma is a second-order phase transition driven by the collapse of a zone border phonon, whose frequency vanishes at the transition temperature. Our calculations show that the spectral function of the in-plane vibrational modes are strongly anomalous with shoulders and double-peak structures. We calculate the lattice thermal conductivity obtaining good agreement with experiments only when non-perturbative anharmonic scattering is included. Our results suggest that the good thermoelectric efficiency of SnSe is strongly affected by the non-perturbative anharmonicity. We expect similar effects to occur in other thermoelectric materials.

cond-mat.mtrl-sci↗

arXiv2018

Pressure and stress tensor of complex anharmonic crystals within the stochastic self-consistent harmonic approximation

The self-consisted harmonic approximation (SCHA) allows the computation of free energy of anharmonic crystals considering both quantum and thermal fluctuations. Recently, a stochastic implementation of the SCHA has been developed, tailored for applications that use total energy and forces computed from first principles. In this work, we extend the applicability of the stochastic SCHA to complex crystals with many degrees of freedom, with the optimisation of both the lattice vectors and the atomic positions. To this goal, we provide an expression for the evaluation of the pressure and stress tensor within the stochastic SCHA formalism. Moreover, we develop a more robust free energy minimisation algorithm, which allows us to perform the SCHA variational minimisation very efficiently in systems having a broad spectrum of phonon frequencies and many degrees of freedom. We test and illustrate the new approach with an application to the phase XI of water ice using density-functional theory. We find that the SCHA reproduces extremely well the experimental thermal expansion of ice in the whole temperature range between 0 K and 270 K, in contrast with the results obtained within the quasi-harmonic approximation, that underestimates the effect by about 25 %.

cond-mat.mtrl-sci↗