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Lu Fan

Publications and source records attributed to Lu Fan.

At least 19 recordsLinked to original sources

Structural Compression for Phylogenetic Inference under Alignment Instability and Indel-Rich Evolution

Phylogenetic inference traditionally relies on aligned characters under substitution models, but this framework becomes less reliable when alignments are unstable or when evolution is dominated by insertions, deletions, repeats, and other structural changes. We adapt Ladderpath as an alignment-free distance approach for phylogenetic inference. Motivated by algorithmic information theory, Ladderpath decomposes sequences into derived, reusable units (``ladderons'', rather than fixed-length $k$-mers) organized hierarchically, from which pairwise distances are computed. The premise is that shared derived sequence structure, including repeated or reused segments that are poorly represented by column-wise substitutions, can retain phylogenetic information. The bacteriophage T7 known lineage, the cpSSR repeat-rich marker, and a cytochrome~$c$ protein dataset confirm that Ladderpath recovers topologies consistent with the known experimental history or with established alignment-based methods. Its advantage emerges under stress: in block-translocation and indel-dominated simulations Ladderpath remains stable while alignment-dependent pipelines deteriorate; on banana mitochondrial and plastome genomes it scales to genome length and captures the expected contrast between organellar histories, all from unaligned input. These results support Ladderpath as an alignment-free, structurally informed method that could complement standard pipelines in cases where higher-order sequence structure carries phylogenetic signal.

q-bio.PE

Dual-Form ASR: Semantics-Aware Inverse Text Normalization for Chinese Speech Recognition

Modern automatic speech recognition (ASR) scenarios require both spoken-form transcripts for faithful transcription and readable written-form transcripts with inverse text normalization (ITN). However, these forms are typically produced by cascaded modules, where a spoken-form ASR output is rewritten by a separate ITN component, making written-form ASR-ITN vulnerable to recognition errors and decoupling normalization from acoustic-contextual modeling, especially for semantically dependent numeric expressions. In this paper, we propose Dual-Form ASR (DF-ASR), a framework that extends spoken-form ASR capability to semantics-aware written-form ITN through paired spoken-form and written-form supervision while retaining prompt-level selection between transcript forms. The dual-form supervision is constructed via a large language model (LLM)-driven generate-and-judge workflow, and training is further enhanced by ITN-MWER, a sequence-level objective that assigns higher cost to errors on normalization-sensitive spans. We also introduce a decision-aware REQUIRE-ITN/\FORBID-ITN protocol to separately measure required normalization and forbidden-span preservation. On manually annotated Chinese subsets from SpeechIO, DF-ASR consistently outperforms open-source ASR-ITN systems, remains competitive with strong closed-source references, and preserves reliable prompt-level control between spoken-form and written-form outputs.

cs.CL

PolySpeech-100: A Large-Scale Benchmark for Speech Understanding Across 100+ Languages and Dialects

While End-to-End (E2E) Speech-Large Language Models (Speech-LLMs) are rapidly evolving, their evaluation methodologies remain limited to the era of simple transcription. Existing benchmarks suffer from three critical limitations: a pronounced bias towards high-resource languages, a focus on low-level recognition (ASR) rather than semantic reasoning, and a neglect of regional dialects. To bridge this gap, we introduce PolySpeech-100, a massive-scale benchmark designed to assess `native-level' speech comprehension across 110 linguistic variants. We employ a novel hybrid construction pipeline that augments gold-standard human recordings with instruction-driven synthetic speech, allowing us to cover 19 distinct Chinese dialects and over 80 low-resource languages. Extensive evaluation of 22 state-of-the-art models (including Gemini-3, GPT-Audio, and Qwen2.5-Omni) yields pivotal insights. First, we demonstrate that open-source E2E models outperform Cascade (ASR+LLM) systems on heavy dialects, proving that direct audio processing preserves critical paralinguistic cues and prosodic features (e.g., intonation, stress) that are often lost in standard transcription. Second, we reveal a significant performance gap: while commercial models maintain robustness, open-source models suffer catastrophic degradation on low-resource languages. Finally, counter-intuitively, we observe that under standard zero-shot settings, Chain-of-Thought prompting frequently degrades speech understanding performance for most evaluated models, revealing a potential modality alignment gap in current architectures. PolySpeech-100 establishes a rigorous standard for the next generation of inclusive, omni-capable Speech-LLMs. The data, demo, and code are publicly available at https://github.com/YoungSeng/PolySpeech-100.

cs.CL

Practical continuous-variable quantum key distribution using dynamic digital signal processing: security proof and experimental demonstration

Digital signal processing technology has paved the way for the realization of high-speed continuous-variable quantum key distribution systems. However, existing security proofs are limited to static digital signal processing algorithms, while practical systems rely on dynamic multiple-input multiple-output algorithms to compensate for time-varying channel impairments. Our analysis reveals that the conventional dynamic algorithm, due to its non-unitary nature, systematically underestimates the excess noise, which in turn leads to security issues and the generation of insecure keys. To close this gap, we propose a secure algorithm model, mapping the dynamic algorithm to an equivalent physical optical model whose security can be rigorously assessed. Simulations illustrate the algorithm's non-unitary property and provide a quantitative analysis of the excess noise underestimation caused by the conventional algorithm. We further experimentally validate the necessity of the proposed modeling for dynamic digital signal processing, achieving a secret key rate of 14.4 Mbps based on estimated excess noise of 0.07 shot noise unit; whereas the conventional algorithm would have dangerously overestimated the key rate to 28.2 Mbps with noise of 0.008 shot noise unit. This work provides the essential security framework for dynamic digital signal processing, overcoming a critical impediment for the development of high-performance continuous-variable quantum key distribution systems.

quant-ph

Accelerating Generative Recommendation via Simple Categorical User Sequence Compression

Although generative recommenders demonstrate improved performance with longer sequences, their real-time deployment is hindered by substantial computational costs. To address this challenge, we propose a simple yet effective method for compressing long-term user histories by leveraging inherent item categorical features, thereby preserving user interests while enhancing efficiency. Experiments on two large-scale datasets demonstrate that, compared to the influential HSTU model, our approach achieves up to a 6x reduction in computational cost and up to 39% higher accuracy at comparable cost (i.e., similar sequence length).

cs.IR

PAC: Pronunciation-Aware Contextualized Large Language Model-based Automatic Speech Recognition

This paper presents a Pronunciation-Aware Contextualized (PAC) framework to address two key challenges in Large Language Model (LLM)-based Automatic Speech Recognition (ASR) systems: effective pronunciation modeling and robust homophone discrimination. Both are essential for raw or long-tail word recognition. The proposed approach adopts a two-stage learning paradigm. First, we introduce a pronunciation-guided context learning method. It employs an interleaved grapheme-phoneme context modeling strategy that incorporates grapheme-only distractors, encouraging the model to leverage phonemic cues for accurate recognition. Then, we propose a pronunciation-discriminative reinforcement learning method with perturbed label sampling to further enhance the model\'s ability to distinguish contextualized homophones. Experimental results on the public English Librispeech and Mandarin AISHELL-1 datasets indicate that PAC: (1) reduces relative Word Error Rate (WER) by 30.2% and 53.8% compared to pre-trained LLM-based ASR models, and (2) achieves 31.8% and 60.5% relative reductions in biased WER for long-tail words compared to strong baselines, respectively.

cs.CL

Evaluating Recabilities of Foundation Models: A Multi-Domain, Multi-Dataset Benchmark

Comprehensive evaluation of the recommendation capabilities of existing foundation models across diverse datasets and domains is essential for advancing the development of recommendation foundation models. In this study, we introduce RecBench-MD, a novel and comprehensive benchmark designed to assess the recommendation abilities of foundation models from a zero-resource, multi-dataset, and multi-domain perspective. Through extensive evaluations of 19 foundation models across 15 datasets spanning 10 diverse domains -- including e-commerce, entertainment, and social media -- we identify key characteristics of these models in recommendation tasks. Our findings suggest that in-domain fine-tuning achieves optimal performance, while cross-dataset transfer learning provides effective practical support for new recommendation scenarios. Additionally, we observe that multi-domain training significantly enhances the adaptability of foundation models. All code and data have been publicly released to facilitate future research.

cs.IR

LANID: LLM-assisted New Intent Discovery

Task-oriented Dialogue Systems (TODS) often face the challenge of encountering new intents. New Intent Discovery (NID) is a crucial task that aims to identify these novel intents while maintaining the capability to recognize existing ones. Previous efforts to adapt TODS to new intents have struggled with inadequate semantic representation or have depended on external knowledge, which is often not scalable or flexible. Recently, Large Language Models (LLMs) have demonstrated strong zero-shot capabilities; however, their scale can be impractical for real-world applications that involve extensive queries. To address the limitations of existing NID methods by leveraging LLMs, we propose LANID, a framework that enhances the semantic representation of lightweight NID encoders with the guidance of LLMs. Specifically, LANID employs the $K$-nearest neighbors and Density-Based Spatial Clustering of Applications with Noise (DBSCAN) algorithms to sample selective utterance pairs from the training set. It then queries an LLM to ascertain the relationships between these pairs. The data produced from this process is utilized to design a contrastive fine-tuning task, which is then used to train a small encoder with a contrastive triplet loss. Our experimental results demonstrate the efficacy of the proposed method across three distinct NID datasets, surpassing strong baselines in both unsupervised and semi-supervised settings. Our code is available at https://github.com/floatSDSDS/LANID.

cs.CL

High-rate discrete-modulated continuous-variable quantum key distribution with composable security

Continuous-variable quantum key distribution holds the potential to generate high secret key rates, making it a prime candidate for high-rate metropolitan quantum network applications. However, despite these promising opportunities, the realization of high-rate continuous-variable quantum key distribution systems with composable security remains an elusive goal. Here, we report a discrete-modulated continuous-variable quantum key distribution system with a composable secret key rate of 18.93 Mbps against collective attacks over a 25 km fiber channel. This record breaking rate is achieved through the probability shaped 16QAM-modulated protocol, which employs semidefinite programming to ensure its composable security. Furthermore, we have employed a fully digital and precise quantum signal processing technique to reduce excess noise to extremely low levels, thereby facilitating efficient broadband system operation. While ensuring low complexity and cost,our system achieves a performance advantage of over an order of magnitude compared to previous continuous-variable quantum key distribution systems, providing a promising solution for future deployment of quantum key distribution.

quant-ph

High-rate discrete-modulated continuous-variable quantum key distribution with composable security

Continuous-variable quantum key distribution holds the potential to generate high secret key rates, making it a prime candidate for high-rate metropolitan quantum network applications. However, despite these promising opportunities, the realization of high-rate continuous-variable quantum key distribution systems with composable security remains an elusive goal. Here, we report a discrete-modulated continuous-variable quantum key distribution system with a composable secret key rate of 18.93 Mbps against collective attacks over a 25 km fiber channel. This record-breaking rate is achieved through the probability shaped 16QAM-modulated protocol, which employs semidefinite programming to ensure its composable security. Furthermore, we have employed a fully digital and precise quantum signal processing technique to reduce excess noise to extremely low levels, thereby facilitating efficient broadband system operation. While ensuring low complexity and cost, our system achieves a performance advantage of over an order of magnitude compared to previous continuous-variable quantum key distribution systems, providing a promising solution for future deployment of quantum key distribution.

quant-ph

Can LLMs Outshine Conventional Recommenders? A Comparative Evaluation

In recent years, integrating large language models (LLMs) into recommender systems has created new opportunities for improving recommendation quality. However, a comprehensive benchmark is needed to thoroughly evaluate and compare the recommendation capabilities of LLMs with traditional recommender systems. In this paper, we introduce RecBench, which systematically investigates various item representation forms (including unique identifier, text, semantic embedding, and semantic identifier) and evaluates two primary recommendation tasks, i.e., click-through rate prediction (CTR) and sequential recommendation (SeqRec). Our extensive experiments cover up to 17 large models and are conducted across five diverse datasets from fashion, news, video, books, and music domains. Our findings indicate that LLM-based recommenders outperform conventional recommenders, achieving up to a 5% AUC improvement in the CTR scenario and up to a 170% NDCG@10 improvement in the SeqRec scenario. However, these substantial performance gains come at the expense of significantly reduced inference efficiency, rendering the LLM-as-RS paradigm impractical for real-time recommendation environments. We aim for our findings to inspire future research, including recommendation-specific model acceleration methods. We will release our code, data, configurations, and platform to enable other researchers to reproduce and build upon our experimental results.

cs.IR

UME: Upcycling Mixture-of-Experts for Scalable and Efficient Automatic Speech Recognition

Recent advancements in scaling up models have significantly improved performance in Automatic Speech Recognition (ASR) tasks. However, training large ASR models from scratch remains costly. To address this issue, we introduce UME, a novel method that efficiently Upcycles pretrained dense ASR checkpoints into larger Mixture-of-Experts (MoE) architectures. Initially, feed-forward networks are converted into MoE layers. By reusing the pretrained weights, we establish a robust foundation for the expanded model, significantly reducing optimization time. Then, layer freezing and expert balancing strategies are employed to continue training the model, further enhancing performance. Experiments on a mixture of 170k-hour Mandarin and English datasets show that UME: 1) surpasses the pretrained baseline by a margin of 11.9% relative error rate reduction while maintaining comparable latency; 2) reduces training time by up to 86.7% and achieves superior accuracy compared to training models of the same size from scratch.

eess.AS

Legommenders: A Comprehensive Content-Based Recommendation Library with LLM Support

We present Legommenders, a unique library designed for content-based recommendation that enables the joint training of content encoders alongside behavior and interaction modules, thereby facilitating the seamless integration of content understanding directly into the recommendation pipeline. Legommenders allows researchers to effortlessly create and analyze over 1,000 distinct models across 15 diverse datasets. Further, it supports the incorporation of contemporary large language models, both as feature encoder and data generator, offering a robust platform for developing state-of-the-art recommendation models and enabling more personalized and effective content delivery.

cs.IR

Learning Multi-Aspect Item Palette: A Semantic Tokenization Framework for Generative Recommendation

Traditional recommendation models often rely on unique item identifiers (IDs) to distinguish between items, which can hinder their ability to effectively leverage item content information and generalize to long-tailed or cold-start items. Recently, semantic tokenization has been proposed as a promising solution that aims to tokenize each item's semantic representation into a sequence of discrete tokens. These semantic tokens have become fundamental in training generative recommendation models. However, existing methods typically rely on RQ-VAE, a residual vector quantizer, for semantic tokenization. This reliance introduces several key limitations, including challenges in embedding extraction, hierarchical coarse-to-fine quantization, and training stability. To address these issues, we introduce LAMIA, a novel approach for multi-aspect semantic tokenization. Unlike RQ-VAE, which uses a single embedding, LAMIA learns an ``item palette''--a collection of independent and semantically parallel embeddings that capture multiple aspects of items. Additionally, LAMIA enhances the semantic encoders through domain-specific tuning using text-based reconstruction tasks, resulting in more representative item palette embeddings. We have conducted extensive experiments to validate the effectiveness of the LAMIA framework across various recommendation tasks and datasets. Our results demonstrate significant improvements in recommendation accuracy over existing methods. To facilitate reproducible research, we will release the source code, data, and configurations.

cs.IR

Practical No-Switching Continuous-Variable Quantum Key Distribution with Biased Quadrature Detection

Continuous-variable quantum key distribution protocol using coherent states and heterodyne detection, called No-Switching protocol, is widely used in practical systems due to the simple experimental setup without basis switching and easy assessment to phase information. The security of an ideal No-Switching protocol has been proved against general attacks in finite-size regime and composable security framework, whose heterodyne detector consists of a beam splitter with transmittance of $50\%$ and two ideal homodyne detectors. However, the transmittance of a beam splitter is inaccurate and the two detectors always have different quantum efficiency and electronic noise, which introduce asymmetry into the heterodyne detection, and further lead to the mismatch between the ideal protocol and practical systems, thereby overestimating the secret key rate and resulting in a practical security loophole. In this paper, we close this loophole by proposing a modified No-Switching protocol with biased quadrature detection, where the asymmetry of the heterodyne detection is modeled to match the practical systems, and the security of the protocol is analyzed in asymptotic and finite-size regimes. Further, an optimization strategy is proposed to achieve the optimal secret key rate by adjusting the transmittance of the beam splitter. Simulation results show the necessity of considering the asymmetry in heterodyne detection and the effectiveness of the optimization, which provides a promising way to realize a practical secure and high-performance No-Switching system.

quant-ph

The Security Analysis of Continuous-Variable Quantum Key Distribution under Limited Eavesdropping with Practical Fiber

Research on optimal eavesdropping models under practical conditions will help to evaluate realistic risk when employing quantum key distribution (QKD) system for secure information transmission. Intuitively, fiber loss will lead to the optical energy leaking to the environment, rather than harvested by the eavesdropper, which also limits the eavesdropping ability while improving the QKD system performance in practical use. However, defining the optimal eavesdropping model in the presence of lossy fiber is difficult because the channel is beyond the control of legitimate partners and the leaked signal is undetectable. Here we investigate how the fiber loss influences the eavesdropping ability based on a teleportation-based collective attack model which requires two distant stations and a shared entanglement source. We find that if the distributed entanglement is limited due to the practical loss, the optimal attack occurs when the two teleportation stations are merged to one and placed close to the transmitter site, which performs similar to the entangling-cloning attack but with a reduced wiretapping ratio. Assuming Eve uses the best available hollow-core fiber, the secret key rate in the practical environment can be 20%~40% higher than that under ideal eavesdropping. While if the entanglement distillation technology is mature enough to provide high quality of distributed entanglement, the two teleportation stations should be distantly separated for better eavesdropping performance, where the eavesdropping can even approach the optimal collective attack. Under the current level of entanglement purification technology, the unavoidable fiber loss can still greatly limit the eavesdropping ability as well as enhance the secret key rate and transmission distance of the realistic system, which promotes the development of QKD systems in practical application scenarios.

quant-ph

Neural2Speech: A Transfer Learning Framework for Neural-Driven Speech Reconstruction

Reconstructing natural speech from neural activity is vital for enabling direct communication via brain-computer interfaces. Previous efforts have explored the conversion of neural recordings into speech using complex deep neural network (DNN) models trained on extensive neural recording data, which is resource-intensive under regular clinical constraints. However, achieving satisfactory performance in reconstructing speech from limited-scale neural recordings has been challenging, mainly due to the complexity of speech representations and the neural data constraints. To overcome these challenges, we propose a novel transfer learning framework for neural-driven speech reconstruction, called Neural2Speech, which consists of two distinct training phases. First, a speech autoencoder is pre-trained on readily available speech corpora to decode speech waveforms from the encoded speech representations. Second, a lightweight adaptor is trained on the small-scale neural recordings to align the neural activity and the speech representation for decoding. Remarkably, our proposed Neural2Speech demonstrates the feasibility of neural-driven speech reconstruction even with only 20 minutes of intracranial data, which significantly outperforms existing baseline methods in terms of speech fidelity and intelligibility.

cs.SD

Do self-supervised speech and language models extract similar representations as human brain?

Speech and language models trained through self-supervised learning (SSL) demonstrate strong alignment with brain activity during speech and language perception. However, given their distinct training modalities, it remains unclear whether they correlate with the same neural aspects. We directly address this question by evaluating the brain prediction performance of two representative SSL models, Wav2Vec2.0 and GPT-2, designed for speech and language tasks. Our findings reveal that both models accurately predict speech responses in the auditory cortex, with a significant correlation between their brain predictions. Notably, shared speech contextual information between Wav2Vec2.0 and GPT-2 accounts for the majority of explained variance in brain activity, surpassing static semantic and lower-level acoustic-phonetic information. These results underscore the convergence of speech contextual representations in SSL models and their alignment with the neural network underlying speech perception, offering valuable insights into both SSL models and the neural basis of speech and language processing.

q-bio.NC