arXiv subjects

Lu Qin

Publications and source records attributed to Lu Qin.

51 records · Page 3Linked to original sources

arXiv2020

GoGNN: Graph of Graphs Neural Network for Predicting Structured Entity Interactions

Entity interaction prediction is essential in many important applications such as chemistry, biology, material science, and medical science. The problem becomes quite challenging when each entity is represented by a complex structure, namely structured entity, because two types of graphs are involved: local graphs for structured entities and a global graph to capture the interactions between structured entities. We observe that existing works on structured entity interaction prediction cannot properly exploit the unique graph of graphs model. In this paper, we propose a Graph of Graphs Neural Network, namely GoGNN, which extracts the features in both structured entity graphs and the entity interaction graph in a hierarchical way. We also propose the dual-attention mechanism that enables the model to preserve the neighbor importance in both levels of graphs. Extensive experiments on real-world datasets show that GoGNN outperforms the state-of-the-art methods on two representative structured entity interaction prediction tasks: chemical-chemical interaction prediction and drug-drug interaction prediction. Our code is available at Github.

cs.LG↗

arXiv2020

Binarized Graph Neural Network

Recently, there have been some breakthroughs in graph analysis by applying the graph neural networks (GNNs) following a neighborhood aggregation scheme, which demonstrate outstanding performance in many tasks. However, we observe that the parameters of the network and the embedding of nodes are represented in real-valued matrices in existing GNN-based graph embedding approaches which may limit the efficiency and scalability of these models. It is well-known that binary vector is usually much more space and time efficient than the real-valued vector. This motivates us to develop a binarized graph neural network to learn the binary representations of the nodes with binary network parameters following the GNN-based paradigm. Our proposed method can be seamlessly integrated into the existing GNN-based embedding approaches to binarize the model parameters and learn the compact embedding. Extensive experiments indicate that the proposed binarized graph neural network, namely BGN, is orders of magnitude more efficient in terms of both time and space while matching the state-of-the-art performance.

cs.LG↗

arXiv2020

Graph3S: A Simple, Speedy and Scalable Distributed Graph Processing System

Graph is a ubiquitous structure in many domains. The rapidly increasing data volume calls for efficient and scalable graph data processing. In recent years, designing distributed graph processing systems has been an increasingly important area to fulfil the demands of processing big graphs in a distributed environment. Though a variety of distributed graph processing systems have been developed, very little attention has been paid to achieving a good combinational system performance in terms of usage simplicity, efficiency and scalability. To contribute to the study of distributed graph processing system, this work tries to fill this gap by designing a simple, speedy and scalable system. Our observation is that enforcing the communication flexibility of a system leads to the gains of both system efficiency and scalability as well as simple usage. We realize our idea in a system Graph3S and conduct extensive experiments with diverse algorithms over big graphs from different domains to test its performance. The results show that, besides simple usage, our system has outstanding performance over various graph algorithms and can even reach up to two orders of magnitude speedup over existing in-memory systems when applying to some algorithms. Also, its scalability is competitive to disk-based systems and even better when less machines are used.

cs.DC↗

arXiv2020

Efficient Bitruss Decomposition for Large-scale Bipartite Graphs

Cohesive subgraph mining in bipartite graphs becomes a popular research topic recently. An important structure k-bitruss is the maximal cohesive subgraph where each edge is contained in at least k butterflies (i.e., (2, 2)-bicliques). In this paper, we study the bitruss decomposition problem which aims to find all the k-bitrusses for k >= 0. The existing bottom-up techniques need to iteratively peel the edges with the lowest butterfly support. In this peeling process, these techniques are time-consuming to enumerate all the supporting butterflies for each edge. To relax this issue, we first propose a novel online index -- the BE-Index which compresses butterflies into k-blooms (i.e., (2, k)-bicliques). Based on the BE-Index, the new bitruss decomposition algorithm BiT-BU is proposed, along with two batch-based optimizations, to accomplish the butterfly enumeration of the peeling process in an efficient way. Furthermore, the BiT-PC algorithm is devised which is more efficient against handling the edges with high butterfly supports. We theoretically show that our new algorithms significantly reduce the time complexities of the existing algorithms. Also, we conduct extensive experiments on real datasets and the result demonstrates that our new techniques can speed up the state-of-the-art techniques by up to two orders of magnitude.

cs.DB↗

arXiv2019

Mining Bursting Communities in Temporal Graphs

Temporal graphs are ubiquitous. Mining communities that are bursting in a period of time is essential to seek emergency events in temporal graphs. Unfortunately, most previous studies for community mining in temporal networks ignore the bursting patterns of communities. In this paper, we are the first to study a problem of seeking bursting communities in a temporal graph. We propose a novel model, called (l, δ)-maximal dense core, to represent a bursting community in a temporal graph. Specifically, an (l, δ)-maximal dense core is a temporal subgraph in which each node has average degree no less than δ in a time segment with length no less than l. To compute the (l, δ)-maximal dense core, we first develop a novel dynamic programming algorithm which can calculate the segment density efficiently. Then, we propose an improved algorithm with several novel pruning techniques to further improve the efficiency. In addition, we also develop an efficient algorithm to enumerate all (l, δ)-maximal dense cores that are not dominated by the others in terms of the parameters l and δ. The results of extensive experiments on 9 real-life datasets demonstrate the effectiveness, efficiency and scalability of our algorithms.

cs.SI↗

arXiv2019

A Survey of Community Search Over Big Graphs

With the rapid development of information technologies, various big graphs are prevalent in many real applications (e.g., social media and knowledge bases). An important component of these graphs is the network community. Essentially, a community is a group of vertices which are densely connected internally. Community retrieval can be used in many real applications, such as event organization, friend recommendation, and so on. Consequently, how to efficiently find high-quality communities from big graphs is an important research topic in the era of big data. Recently a large group of research works, called community search, have been proposed. They aim to provide efficient solutions for searching high-quality communities from large networks in real-time. Nevertheless, these works focus on different types of graphs and formulate communities in different manners, and thus it is desirable to have a comprehensive review of these works. In this survey, we conduct a thorough review of existing community search works. Moreover, we analyze and compare the quality of communities under their models, and the performance of different solutions. Furthermore, we point out new research directions. This survey does not only help researchers to have a better understanding of existing community search solutions, but also provides practitioners a better judgment on choosing the proper solutions.

cs.DB↗

arXiv2019

Efficient Butterfly Counting for Large Bipartite Networks

Bipartite networks are of great importance in many real-world applications. In bipartite networks, butterfly (i.e., a complete 2 x 2 biclique) is the smallest non-trivial cohesive structure and plays a key role. In this paper, we study the problem of efficient counting the number of butterflies in bipartite networks. The most advanced techniques are based on enumerating wedges which is the dominant cost of counting butterflies. Nevertheless, the existing algorithms cannot efficiently handle large-scale bipartite networks. This becomes a bottleneck in large-scale applications. In this paper, instead of the existing layer-priority-based techniques, we propose a vertex-priority-based paradigm BFC-VP to enumerate much fewer wedges; this leads to a significant improvement of the time complexity of the state-of-the-art algorithms. In addition, we present cache-aware strategies to further improve time efficiency while theoretically retaining the time complexity of BFC-VP. Moreover, we also show that our proposed techniques can work efficiently in external and parallel contexts. Our extensive empirical studies demonstrate that the proposed techniques can speed up the state-of-the-art techniques by up to two orders of magnitude for the real datasets.

cs.SI↗

arXiv2019

A Survey and Experimental Analysis of Distributed Subgraph Matching

Recently there emerge many distributed algorithms that aim at solving subgraph matching at scale. Existing algorithm-level comparisons failed to provide a systematic view to the pros and cons of each algorithm mainly due to the intertwining of strategy and optimization. In this paper, we identify four strategies and three general-purpose optimizations from representative state-of-the-art works. We implement the four strategies with the optimizations based on the common Timely dataflow system for systematic strategy-level comparison. Our implementation covers all representation algorithms. We conduct extensive experiments for both unlabelled matching and labelled matching to analyze the performance of distributed subgraph matching under various settings, which is finally summarized as a practical guide.

cs.DB↗

arXiv2017

Efficient Graph Edit Distance Computation and Verification via Anchor-aware Lower Bound Estimation

Graph edit distance (GED) is an important similarity measure adopted in a similarity-based analysis between two graphs, and computing GED is a primitive operator in graph database analysis. Partially due to the NP-hardness, the existing techniques for computing GED are only able to process very small graphs with less than 30 vertices. Motivated by this, in this paper we systematically study the problems of both GED computation, and GED verification (i.e., verify whether the GED between two graphs is no larger than a user-given threshold). Firstly, we develop a unified framework that can be instantiated into either a best-first search approach AStar+ or a depth-first search approach DFS+. Secondly, we design anchor-aware lower bound estimation techniques to compute tighter lower bounds for intermediate search states, which significantly reduce the search spaces of both AStar+ and DFS+. We also propose efficient techniques to compute the lower bounds. Thirdly, based on our unified framework, we contrast AStar+ with DFS+ regarding their time and space complexities, and recommend that AStar+ is better than DFS+ by having a much smaller search space. Extensive empirical studies validate that AStar+ performs better than DFS+, and show that our AStar+-BMa approach outperforms the state-of-the-art technique by more than four orders of magnitude.

cs.DB↗

arXiv2017

Enumerating k-Vertex Connected Components in Large Graphs

Cohesive subgraph detection is an important graph problem that is widely applied in many application domains, such as social community detection, network visualization, and network topology analysis. Most of existing cohesive subgraph metrics can guarantee good structural properties but may cause the free-rider effect. Here, by free-rider effect, we mean that some irrelevant subgraphs are combined as one subgraph if they only share a small number of vertices and edges. In this paper, we study k-vertex connected component (k-VCC) which can effectively eliminate the free-rider effect but less studied in the literature. A k-VCC is a connected subgraph in which the removal of any k-1 vertices will not disconnect the subgraph. In addition to eliminating the free-rider effect, k-VCC also has other advantages such as bounded diameter, high cohesiveness, bounded graph overlapping, and bounded subgraph number. We propose a polynomial time algorithm to enumerate all k-VCCs of a graph by recursively partitioning the graph into overlapped subgraphs. We find that the key to improving the algorithm is reducing the number of local connectivity testings. Therefore, we propose two effective optimization strategies, namely neighbor sweep and group sweep, to largely reduce the number of local connectivity testings. We conduct extensive performance studies using seven large real datasets to demonstrate the effectiveness of this model as well as the efficiency of our proposed algorithms.

cs.DB↗

arXiv2016

When Engagement Meets Similarity: Efficient (k,r)-Core Computation on Social Networks

In this paper, we investigate the problem of (k,r)-core which intends to find cohesive subgraphs on social networks considering both user engagement and similarity perspectives. In particular, we adopt the popular concept of k-core to guarantee the engagement of the users (vertices) in a group (subgraph) where each vertex in a (k,r)-core connects to at least k other vertices. Meanwhile, we also consider the pairwise similarity between users based on their profiles. For a given similarity metric and a similarity threshold r, the similarity between any two vertices in a (k,r)-core is ensured not less than r. Efficient algorithms are proposed to enumerate all maximal (k,r)-cores and find the maximum (k,r)-core, where both problems are shown to be NP-hard. Effective pruning techniques significantly reduce the search space of two algorithms and a novel (k,k')-core based (k,r)-core size upper bound enhances performance of the maximum (k,r)-core computation. We also devise effective search orders to accommodate the different nature of two mining algorithms. Comprehensive experiments on real-life data demonstrate that the maximal/maximum (k,r)-cores enable us to find interesting cohesive subgraphs, and performance of two mining algorithms is significantly improved by proposed techniques.

cs.SI↗

arXiv2016

A Fast Order-Based Approach for Core Maintenance

Graphs have been widely used in many applications such as social networks, collaboration networks, and biological networks. One important graph analytics is to explore cohesive subgraphs in a large graph. Among several cohesive subgraphs studied, k-core is one that can be computed in linear time for a static graph. Since graphs are evolving in real applications, in this paper, we study core maintenance which is to reduce the computational cost to compute k-cores for a graph when graphs are updated from time to time dynamically. We identify drawbacks of the existing efficient algorithm, which needs a large search space to find the vertices that need to be updated, and has high overhead to maintain the index built, when a graph is updated. We propose a new order-based approach to maintain an order, called k-order, among vertices, while a graph is updated. Our new algorithm can significantly outperform the state-of-the-art algorithm up to 3 orders of magnitude for the 11 large real graphs tested. We report our findings in this paper.

cs.DB↗

arXiv2015

I/O Efficient Core Graph Decomposition at Web Scale

Core decomposition is a fundamental graph problem with a large number of applications. Most existing approaches for core decomposition assume that the graph is kept in memory of a machine. Nevertheless, many real-world graphs are big and may not reside in memory. In the literature, there is only one work for I/O efficient core decomposition that avoids loading the whole graph in memory. However, this approach is not scalable to handle big graphs because it cannot bound the memory size and may load most parts of the graph in memory. In addition, this approach can hardly handle graph updates. In this paper, we study I/O efficient core decomposition following a semi-external model, which only allows node information to be loaded in memory. This model works well in many web-scale graphs. We propose a semi-external algorithm and two optimized algorithms for I/O efficient core decomposition using very simple structures and data access model. To handle dynamic graph updates, we show that our algorithm can be naturally extended to handle edge deletion. We also propose an I/O efficient core maintenance algorithm to handle edge insertion, and an improved algorithm to further reduce I/O and CPU cost by investigating some new graph properties. We conduct extensive experiments on 12 real large graphs. Our optimal algorithm significantly outperform the existing I/O efficient algorithm in terms of both processing time and memory consumption. In many memory-resident graphs, our algorithms for both core decomposition and maintenance can even outperform the in-memory algorithm due to the simple structures and data access model used. Our algorithms are very scalable to handle web-scale graphs. As an example, we are the first to handle a web graph with 978.5 million nodes and 42.6 billion edges using less than 4.2 GB memory.

cs.DB↗

arXiv2012

Diversifying Top-K Results

Top-k query processing finds a list of k results that have largest scores w.r.t the user given query, with the assumption that all the k results are independent to each other. In practice, some of the top-k results returned can be very similar to each other. As a result some of the top-k results returned are redundant. In the literature, diversified top-k search has been studied to return k results that take both score and diversity into consideration. Most existing solutions on diversified top-k search assume that scores of all the search results are given, and some works solve the diversity problem on a specific problem and can hardly be extended to general cases. In this paper, we study the diversified top-k search problem. We define a general diversified top-k search problem that only considers the similarity of the search results themselves. We propose a framework, such that most existing solutions for top-k query processing can be extended easily to handle diversified top-k search, by simply applying three new functions, a sufficient stop condition sufficient(), a necessary stop condition necessary(), and an algorithm for diversified top-k search on the current set of generated results, div-search-current(). We propose three new algorithms, namely, div-astar, div-dp, and div-cut to solve the div-search-current() problem. div-astar is an A* based algorithm, div-dp is an algorithm that decomposes the results into components which are searched using div-astar independently and combined using dynamic programming. div-cut further decomposes the current set of generated results using cut points and combines the results using sophisticated operations. We conducted extensive performance studies using two real datasets, enwiki and reuters. Our div-cut algorithm finds the optimal solution for diversified top-k search problem in seconds even for k as large as 2,000.

cs.DB↗

arXiv2009

Fast Probabilistic Ranking under x-Relation Model

The probabilistic top-k queries based on the interplay of score and probability, under the possible worlds semantic, become an important research issue that considers both score and uncertainty on the same basis. In the literature, many different probabilistic top-k queries are proposed. Almost all of them need to compute the probability of a tuple t_i to be ranked at the j-th position across the entire set of possible worlds. The cost of such computing is the dominant cost and is known as O(kn^2), where n is the size of dataset. In this paper, we propose a new novel algorithm that computes such probability in O(kn).

cs.DB↗