arXiv subjects

Luc Berthouze

Publications and source records attributed to Luc Berthouze.

25 records · Page 2Linked to original sources

arXiv2014

Oscillating epidemics in a dynamic network model: stochastic and mean-field analysis

An adaptive network model using SIS epidemic propagation with link-type dependent link activation and deletion is considered. Bifurcation analysis of the pairwise ODE approximation and the network-based stochastic simulation is carried out, showing that three typical behaviours may occur; namely, oscillations can be observed besides disease-free or endemic steady states. The oscillatory behaviour in the stochastic simulations is studied using Fourier analysis, as well as through analysing the exact master equations of the stochastic model. A compact pairwise approximation for the dynamic network case is also developed and, for the case of link-type independent rewiring, the outcome of epidemics and changes in network structure are concurrently presented in a single bifurcation diagram. By going beyond simply comparing simulation results to mean-field models, our approach yields deeper insights into the observed phenomena and help better understand and map out the limitations of mean-field models.

math.PR↗

arXiv2014

Markers of criticality in phase synchronisation

The concept of the brain as a critical system is very attractive because systems close to criticality are thought to maximise their dynamic range of information processing and communication. To date, there have been two key experimental observations supporting this hypothesis: i) neuronal avalanches with power law distribution of size and ii) long-range temporal correlations (LRTCs) in the amplitude of neural oscillations. The case for how these maximise dynamic range of information processing and communication is still being made and because a significant substrate for information coding and transmission is neural synchrony it is of interest to link synchronisation measures with those of criticality. We propose a framework for characterising criticality in synchronisation based on a new metric of phase synchronisation (rate of change of phase difference) and a set of methods we have developed for detecting LRTCs. We test this framework against two classical models of criticality (Ising and Kuramoto) and recently described variants of these models aimed to more closely represent human brain dynamics. From these simulations we determine the parameters at which these systems show evidence of LRTCs in phase synchronisation. We demonstrate proof of principle by analysing pairs of human simultaneous EEG and EMG time series, suggesting that LRTCs of corticomuscular phase synchronisation can be detected in the resting state. The existence of LRTCs in fluctuations of phase synchronisation suggests that these fluctuations are governed by non-local behaviour. This has important implications regarding the conditions under which one should expect to see LRTCs in phase synchronisation. Specifically, brain resting states may exhibit LRTCs reflecting a state of readiness facilitating rapid task-dependent shifts towards and away from synchronous states that abolish LRTCs.

cond-mat.dis-nn↗

arXiv2013

Higher-order structure and epidemic dynamics in clustered networks

Clustering is typically measured by the ratio of triangles to all triples, open or closed. Generating clustered networks, and how clustering affects dynamics on networks, is reasonably well understood for certain classes of networks \cite{vmclust, karrerclust2010}, e.g., networks composed of lines and non-overlapping triangles. In this paper we show that it is possible to generate networks which, despite having the same degree distribution and equal clustering, exhibit different higher-order structure, specifically, overlapping triangles and other order-four (a closed network motif composed of four nodes) structures. To distinguish and quantify these additional structural features, we develop a new network metric capable of measuring order-four structure which, when used alongside traditional network metrics, allows us to more accurately describe a network's topology. Three network generation algorithms are considered: a modified configuration model and two rewiring algorithms. By generating homogeneous networks with equal clustering we study and quantify their structural differences, and using SIS (Susceptible-Infected-Susceptible) and SIR (Susceptible-Infected-Recovered) dynamics we investigate computationally how differences in higher-order structure impact on epidemic threshold, final epidemic or prevalence levels and time evolution of epidemics. Our results suggest that characterising and measuring higher-order network structure is needed to advance our understanding of the impact of network topology on dynamics unfolding on the networks.

physics.soc-ph↗

arXiv2013

Identification of criticality in neuronal avalanches: II. A theoretical and empirical investigation of the driven case

The observation of apparent power-laws in neuronal systems has led to the suggestion that the brain is at, or close to, a critical state and may be a self-organised critical system. Within the framework of self-organised criticality a separation of timescales is thought to be crucial for the observation of power-law dynamics and computational models are often constructed with this property. However, this is not necessarily a characteristic of physiological neural networks - external input does not only occur when the network is at rest/a steady state. In this paper we study a simple neuronal network model driven by a continuous external input (i.e.\ the model does not have a separation of timescales) and analytically tuned to operate in the region of a critical state (it reaches the critical regime exactly in the absence of input - the case studied in the companion paper to this article). The system displays avalanche dynamics in the form of cascades of neuronal firing separated by periods of silence. We observe partial scale-free behaviour in the distribution of avalanche size for low levels of external input. We analytically derive the distributions of waiting times and investigate their temporal behaviour in relation to different levels of external input, showing that the system's dynamics can exhibit partial long-range temporal correlations. We further show that as the system approaches the critical state by two alternative `routes', different markers of criticality (partial scale-free behaviour and long-range temporal correlations) are displayed. This suggests that signatures of criticality exhibited by a particular system in close proximity to a critical state are dependent on the region in parameter space at which the system (currently) resides.

q-bio.NC↗

arXiv2013

A maximum likelihood based technique for validating detrended fluctuation analysis (ML-DFA)

Detrended Fluctuation Analysis (DFA) is widely used to assess the presence of long-range temporal correlations in time series. Signals with long-range temporal correlations are typically defined as having a power law decay in their autocorrelation function. The output of DFA is an exponent, which is the slope obtained by linear regression of a log-log fluctuation plot against window size. However, if this fluctuation plot is not linear, then the underlying signal is not self-similar, and the exponent has no meaning. There is currently no method for assessing the linearity of a DFA fluctuation plot. Here we present such a technique, called ML-DFA. We scale the DFA fluctuation plot to construct a likelihood function for a set of alternative models including polynomial, root, exponential, logarithmic and spline functions. We use this likelihood function to determine the maximum likelihood and thus to calculate values of the Akaike and Bayesian information criteria, which identify the best fit model when the number of parameters involved is taken into account and over-fitting is penalised. This ensures that, of the models that fit well, the least complicated is selected as the best fit. We apply ML-DFA to synthetic data from FARIMA processes and sine curves with DFA fluctuation plots whose form has been analytically determined, and to experimentally collected neurophysiological data. ML-DFA assesses whether the hypothesis of a linear fluctuation plot should be rejected, and thus whether the exponent can be considered meaningful. We argue that ML-DFA is essential to obtaining trustworthy results from DFA.

q-bio.QM↗

arXiv2012

Identification of criticality in neuronal avalanches: I. A theoretical investigation of the non-driven case

In this paper we study a simple model of a purely excitatory neural network that, by construction, operates at a critical point. This model allows us to consider various markers of criticality and illustrate how they should perform in a finite-size system. By calculating the exact distribution of avalanche sizes we are able to show that, over a limited range of avalanche sizes which we precisely identify, the distribution has scale free properties but is not a power law. This suggests that it would be inappropriate to dismiss a system as not being critical purely based on an inability to rigorously fit a power law distribution as has been recently advocated. In assessing whether a system, especially a finite-size one, is critical it is thus important to consider other possible markers. We illustrate one of these by showing the divergence of susceptibility as the critical point of the system is approached. Finally, we provide evidence that power laws may underlie other observables of the system, that may be more amenable to robust experimental assessment.

q-bio.NC↗

arXiv2012

A power-law distribution of phase-locking intervals does not imply critical interaction

Neural synchronisation plays a critical role in information processing, storage and transmission. Characterising the pattern of synchronisation is therefore of great interest. It has recently been suggested that the brain displays broadband criticality based on two measures of synchronisation - phase locking intervals and global lability of synchronisation - showing power law statistics at the critical threshold in a classical model of synchronisation. In this paper, we provide evidence that, within the limits of the model selection approach used to ascertain the presence of power law statistics, the pooling of pairwise phase-locking intervals from a non-critically interacting system can produce a distribution that is similarly assessed as being power law. In contrast, the global lability of synchronisation measure is shown to better discriminate critical from non critical interaction.

physics.bio-ph↗