arXiv subjects

Luca Dede'

Publications and source records attributed to Luca Dede'.

At least 19 recordsLinked to original sources

arXiv2026

Physics-Informed Neural Networks for the High-Resolution Reconstruction of Flow Measurement Indicators in Fluid Dynamics

Accurate, spatially resolved flow field measurements are essential for the reliable assessment of hemodynamic quantities in cardiovascular research and clinical practice. Experimental techniques, such as 4D flow MRI, PIV, or Doppler ultrasound, often yield data that are sparse, noisy, or under-resolved, particularly near vessel walls and in regions of complex flow. This limits the fidelity of distributed or derived hemodynamic indicators such as the wall shear stress and the clinical utility of such measurements. To address these challenges, we propose a physics-informed neural network (PINN) framework that integrates the incompressible Navier-Stokes equations with velocity measurements coming from experimental flow field data. By embedding physical laws into data, PINN enhances the reconstruction of velocity fields, enables the estimation of unmeasured quantities such as pressure and wall shear stress, and improves the spatial resolution of hemodynamic indicators. We show the effectiveness of our approach using both in silico and experimental data. First, we apply our method to the FDA nozzle benchmark, leveraging both control particle image velocimetry (PIV) measurements and computational fluid dynamics (CFD) simulations. Next, we apply our method to the more complex case of blood flow in an aneurysm model, exploiting in vitro 4D flow MRI data. In both cases, the synergy between data-driven learning and physics-based regularization yields results that align more closely with ground truth observations than standard CFD or pure data-driven approaches. Our findings highlight the potential of PINNs to improve the fidelity of under-resolved flow field measurements and yield spatially resolved hemodynamic indicators.

math.NA↗

arXiv2026

K-Models: a Flexible and Interpretable Method for Ordinal Clustering with Application to Antigen-Antibody Interaction Profiles

Existing clustering methods for functional data often prioritize partitioning accuracy over interpretability, making it challenging to extract meaningful insights when the data-generating process follows a specific underlying structure and an ordinal relationship among clusters is suspected. This work introduces K-Models, a novel framework that integrates ordinal constraints and estimates key underlying elements of the random process generating the observed functional profiles, improving both interpretability and structure identification. The proposed method is evaluated through simulations and real-world applications. In particular, it is tested on Region of Interest (ROI) curves, which represent reaction profiles from a reflectometric sensor monitoring biomolecular interactions, such as antigen-antibody binding. These curves represent changes in reflected light intensity over time at multiple measurement spots with immobilized antigens during analyte exposure, capturing the binding dynamics of the system. The goal is to identify intrinsic signal patterns solely from the observed dynamics, making this dataset an ideal benchmark for assessing the added interpretability of the proposed approach. By incorporating structural assumptions into the clustering process, K-Models enhances interpretability while maintaining performance comparable to state-of-the-art techniques, providing a valuable tool for analyzing functional data with an underlying ordinal structure.

stat.ML↗

arXiv2026

The functional impact of myofiber macroscopic organization and disarray in computational models of the murine heart

A major challenge in computational models of cardiac electromechanics is the reconstruction of myocardial fiber architecture, as direct in vivo measurements of fiber orientation are not feasible. Consequently, rule-based methods are commonly adopted as surrogates. This study investigates the respective roles of macroscopic fiber architecture and microscopic fiber disarray in cardiac electromechanical simulations. A high-fidelity biventricular electromechanical model of a murine heart was developed using a high-resolution myocardial fiber field obtained via mesoscopic optical imaging, which serves as a reference ground truth. A spatial smoothing strategy is introduced to decouple macroscopic fiber organization from local disarray, and the resulting responses are also compared with those obtained using a rule-based fiber field. The results show that passive mechanics and electrophysiological activation are only weakly affected by fiber disarray, with global chamber compliance and activation times remaining largely unchanged across different fiber descriptions. In contrast, active mechanics is highly sensitive to fiber architecture. Moderate regularization of the experimentally measured fiber field enhances the ventricular pumping efficiency of the computational model by reducing microscopic disarray while preserving the macroscopic helical organization, whereas excessive smoothing or rule-based fiber reconstructions lead to unphysiologically strong or inefficient contraction. Within this framework, two commonly adopted surrogate strategies to account for fiber disarray are investigated: a reduction of the effective cross-bridge stiffness in the active tension model, and the introduction of controlled misalignment between active tension and the local fiber direction. Overall, the results reveal important limitations of commonly adopted surrogate approaches for modeling fiber disarray.

math.NA↗

arXiv2025

Cardiocirculatory Computational Models for the Study of Hypertension

In this work, we develop patient-specific cardiocirculatory models with the aim of building Digital Twins for hypertension. In particular, in our pathophysiology-based framework, we consider both 0D cardiocirculatory models and a 3D-0D electromechanical model. The 0D model, which consists of an RLC circuit, is studied in two variants, with and without capillaries. The 3D-0D model consists of a three-dimensional electromechanical model of the left ventricle, coupled with a 0D model for the external blood circulation: this representation enables the assessment of additional quantities related to ventricular deformation and stress, and offers a more detailed representation compared to a fully 0D model. Sensitivity analysis is performed on the 0D model, with both a mono- and a multi-parametric approach, in order to identify the parameters that most influence the model outputs and guide the calibration process. We studied three different scenarios, corresponding to systemic, pulmonary and renovascular hypertension, each in three nuances of severity. To maintain a fair comparison among the models, a parameter calibration strategy is developed; the outputs of the 0D model with capillaries are utilized to enhance the 3D-0D model. The results demonstrate that the 3D-0D model yields an accurate representation of cardiocirculatory dynamics in the presence of hypertension; this model represents a powerful step toward digital twins for real-time hypertension control, providing refined and clinically meaningful insights beyond those achievable with 0D models alone.

math.NA↗

arXiv2025

Improvements on uncertainty quantification with variational autoencoders

Inverse problems aim to determine model parameters of a mathematical problem from given observational data. Neural networks can provide an efficient tool to solve these problems. In the context of Bayesian inverse problems, Uncertainty Quantification Variational AutoEncoders (UQ-VAE), a class of neural networks, approximate the posterior distribution mean and covariance of model parameters. This allows for both the estimation of the parameters and their uncertainty in relation to the observational data. In this work, we propose a novel loss function for training UQ-VAEs, which includes, among other modifications, the removal of a sample mean term from an already existing one. This modification improves the accuracy of UQ-VAEs, as the original theoretical result relies on the convergence of the sample mean to the expected value (a condition that, in high dimensional parameter spaces, requires a prohibitively large number of samples due to the curse of dimensionality). Avoiding the computation of the sample mean significantly reduces the training time in high dimensional parameter spaces compared to previous literature results. Under this new formulation, we establish a new theoretical result for the approximation of the posterior mean and covariance for general mathematical problems. We validate the effectiveness of UQ-VAEs through three benchmark numerical tests: a Poisson inverse problem, a non affine inverse problem and a 0D cardiocirculatory model, under the two clinical scenarios of systemic hypertension and ventricular septal defect. For the latter case, we perform forward uncertainty quantification.

math.NA↗

arXiv2025

Coupling models of resistive valves to muscle mechanics in cardiac fluid-structure interaction simulations

To accurately simulate all phases of the cardiac cycle, computational models of hemodynamics in heart chambers need to include a sufficiently faithful model of cardiac valves. This can be achieved efficiently through resistive methods, and the resistive immersed implicit surface (RIIS) model in particular [Fedele et al., BMMB, 2017]. However, the conventional RIIS model is not suited to fluid-structure interaction (FSI) simulations, since it neglects the reaction forces by which valves are attached to the cardiac walls, leading to models that are not consistent with Newton's laws. In this paper, we propose an improvement to RIIS to overcome this limitation, by adding distributed forces acting on the structure to model the attachment of valves to the cardiac walls. The modification has a minimal computational overhead thanks to an explicit numerical discretization scheme. Numerical experiments in both idealized and realistic settings demonstrate the effectiveness of the proposed modification in ensuring the physical consistency of the model, thus allowing to apply RIIS and other resistive valve models in the context of FSI simulations.

math.NA↗

arXiv2025

Influence of cellular mechano-calcium feedback in numerical models of cardiac electromechanics

Multiphysics and multiscale mathematical models enable the non-invasive study of cardiac function. These models often rely on simplifying assumptions that neglect certain biophysical processes to balance fidelity and computational cost. In this work, we propose an eikonal-based framework that incorporates mechano-calcium feedback -- the effect of mechanical deformation on calcium-troponin buffering -- while introducing only negligible computational overhead. To assess the impact of mechano-calcium feedback at the organ level, we develop a bidirectionally coupled cellular electromechanical model and integrate it into two cardiac multiscale frameworks: a monodomain-driven model that accounts for geometric feedback on electrophysiology and the proposed eikonal-based approach, which instead neglects geometric feedback. By ensuring consistent cellular model calibration across all scenarios, we isolate the role of mechano-calcium feedback and systematically compare its effects against models without it. Our results indicate that, under baseline conditions, mechano-calcium feedback has minimal influence on overall cardiac function. However, its effects become more pronounced in altered force generation scenarios, such as inotropic modulation. Furthermore, we demonstrate that the eikonal-based framework, despite omitting other types of mechano-electric feedback, effectively captures the role of mechano-calcium feedback at significantly lower computational costs than the monodomain-driven model, reinforcing its utility in computational cardiology.

math.NA↗

arXiv2025

Enhanced uncertainty quantification variational autoencoders for the solution of Bayesian inverse problems

Among other uses, neural networks are a powerful tool for solving deterministic and Bayesian inverse problems in real-time, where variational autoencoders, a specialized type of neural network, enable the Bayesian estimation of model parameters and their distribution from observational data allowing real-time inverse uncertainty quantification. In this work, we build upon existing research [Goh, H. et al., Proceedings of Machine Learning Research, 2022] by proposing a novel loss function to train variational autoencoders for Bayesian inverse problems. When the forward map is affine, we provide a theoretical proof of the convergence of the latent states of variational autoencoders to the posterior distribution of the model parameters. We validate this theoretical result through numerical tests and we compare the proposed variational autoencoder with the existing one in the literature both in terms of accuracy and generalization properties. Finally, we test the proposed variational autoencoder on a Laplace equation, with comparison to the original one and Markov Chains Monte Carlo.

cs.LG↗

arXiv2025

Functional-Ordinal Canonical Correlation Analysis With Application to Data from Optical Sensors

We address the problem of predicting a target ordinal variable based on observable features consisting of functional profiles. This problem is crucial, especially in decision-making driven by sensor systems, when the goal is to assess an ordinal variable such as the degree of deterioration, quality level, or risk stage of a process, starting from functional data observed via sensors. We purposely introduce a novel approach called functional-ordinal Canonical Correlation Analysis (foCCA), which is based on a functional data analysis approach. FoCCA allows for dimensionality reduction of observable features while maximizing their ability to differentiate between consecutive levels of an ordinal target variable. Unlike existing methods for supervised learning from functional data, foCCA fully incorporates the ordinal nature of the target variable. This enables the model to capture and represent the relative dissimilarities between consecutive levels of the ordinal target, while also explaining these differences through the functional features. Extensive simulations demonstrate that foCCA outperforms current state-of-the-art methods in terms of prediction accuracy in the reduced feature space. A case study involving the prediction of antigen concentration levels from optical biosensor signals further confirms the superior performance of foCCA, showcasing both improved predictive power and enhanced interpretability compared to competing approaches.

stat.ME↗

arXiv2025

SEIHRDV: a multi-age multi-group epidemiological model and its validation on the COVID-19 epidemics in Italy

We propose a novel epidemiological model, referred to as SEIHRDV, for the numerical simulation of the COVID-19 epidemic, which we validate using data from Italy starting in September 2020. SEIHRDV features the following compartments: Susceptible (S), Exposed (E), Infectious (I), Healing (H), Recovered (R), Deceased (D) and Vaccinated (V). The model is age-stratified, as it considers the population split into 15 age groups. Moreover, it takes into account 7 different contexts of exposition to the infection (family, home, school, work, transport, leisure, other contexts), which impact on the transmission mechanism. Thanks to these features, the model can address the analysis of the epidemics and the efficacy of non-pharmaceutical interventions, as well as possible vaccination strategies and the introduction of the Green Pass, a containment measure introduced in Italy in 2021. By leveraging on the SEIHRDV model, we successfully analyzed epidemic trends during the COVID-19 outbreak from September 2020 to July 2021. The model proved instrumental in conducting comprehensive what-if studies and scenario analyses tailored to Italy and its regions. Furthermore, SEIHRDV facilitated accurate forecasting of the future potential trajectory of the epidemic, providing critical information for informed decision making and public health strategies.

q-bio.PE↗

arXiv2024

Coupled Eikonal problems to model cardiac reentries in Purkinje network and myocardium

We propose a novel partitioned scheme based on Eikonal equations to model the coupled propagation of the electrical signal in the His-Purkinje system and in the myocardium for cardiac electrophysiology. This scheme allows, for the first time in Eikonal-based modeling, to capture all possible signal reentries between the Purkinje network and the cardiac muscle that may occur under pathological conditions. As part of the proposed scheme, we introduce a new pseudo-time method for the Eikonal-diffusion problem in the myocardium, to correctly enforce electrical stimuli coming from the Purkinje network. We test our approach by performing numerical simulations of cardiac electrophysiology in a real biventricular geometry, under both pathological and therapeutic conditions, to demonstrate its flexibility, robustness, and accuracy.

math.NA↗

arXiv2024

Defining myocardial fiber bundle architecture in atrial digital twins

A key component in developing atrial digital twins (ADT) - virtual representations of patients' atria - is the accurate prescription of myocardial fibers which are essential for the tissue characterization. Due to the difficulty of reconstructing atrial fibers from medical imaging, a widely used strategy for fiber generation in ADT relies on mathematical models. Existing methodologies utilze semi-automatic approaches, are tailored to specific morphologies, and lack rigorous validation against imaging fiber data. In this study, we introduce a novel atrial Laplace-Dirichlet-Rule-Based Method (LDRBM) for prescribing highly detailed myofiber orientations and providing robust regional annotation in bi-atrial morphologies of any complexity. The robustness of our approach is verified in eight extremely detailed bi-atrial geometries, derived from a sub-millimiter Diffusion-Tensor-Magnetic-Resonance Imaging (DTMRI) human atrial fiber dataset. We validate the LDRBM by quantitatively recreating each of the DTMRI fiber architectures: a comprehensive comparison with DTMRI ground truth data is conducted, investigating differences between electrophysiology (EP) simulations provided by either LDRBM and DTMRI fibers. Finally, we demonstrate that the novel LDRBM outperforms current state-of-the-art fiber models, confirming the exceptional accuracy of our methodology and the critical importance of incorporating detailed fiber orientations in EP simulations. Ultimately, this work represents a fundamental step toward the development of physics-based digital twins of the human atria, establishing a new standard for prescribing fibers in ADT.

physics.med-ph↗

arXiv2024

Two new calibration techniques of lumped-parameter mathematical models for the cardiovascular system

Cardiocirculatory mathematical models serve as valuable tools for investigating physiological and pathological conditions of the circulatory system. To investigate the clinical condition of an individual, cardiocirculatory models need to be personalized by means of calibration methods. In this study we propose a new calibration method for a lumped-parameter cardiocirculatory model. This calibration method utilizes the correlation matrix between parameters and model outputs to calibrate the latter according to data. We test this calibration method and its combination with L-BFGS-B (Limited memory Broyden - Fletcher - Goldfarb - Shanno with Bound constraints) comparing them with the performances of L-BFGS-B alone. We show that the correlation matrix calibration method and the combined one effectively reduce the loss function of the associated optimization problem. In the case of in silico generated data, we show that the two new calibration methods are robust with respect to the initial guess of parameters and to the presence of noise in the data. Notably, the correlation matrix calibration method achieves the best results in estimating the parameters in the case of noisy data and it is faster than the combined calibration method and L-BFGS-B. Finally, we present real test case where the two new calibration methods yield results comparable to those obtained using L-BFGS-B in terms of minimizing the loss function and estimating the clinical data. This highlights the effectiveness of the new calibration methods for clinical applications.

math.NA↗

arXiv2024

Robust radial basis function interpolation based on geodesic distance for the numerical coupling of multiphysics problems

Multiphysics simulations frequently require transferring solution fields between subproblems with non-matching spatial discretizations, typically using interpolation techniques. Standard methods are usually based on measuring the closeness between points by means of the Euclidean distance, which does not account for curvature, cuts, cavities or other non-trivial geometrical or topological features of the domain. This may lead to spurious oscillations in the interpolant in proximity to these features. To overcome this issue, we propose a modification to rescaled localized radial basis function (RL-RBF) interpolation to account for the geometry of the interpolation domain, by yielding conformity and fidelity to geometrical and topological features. The proposed method, referred to as RL-RBF-G, relies on measuring the geodesic distance between data points. RL-RBF-G removes spurious oscillations appearing in the RL-RBF interpolant, resulting in increased accuracy in domains with complex geometries. We demonstrate the effectiveness of RL-RBF-G interpolation through a convergence study in an idealized setting. Furthermore, we discuss the algorithmic aspects and the implementation of RL-RBF-G interpolation in a distributed-memory parallel framework, and present the results of a strong scalability test yielding nearly ideal results. Finally, we show the effectiveness of RL-RBF-G interpolation in multiphysics simulations by considering an application to a whole-heart cardiac electromecanics model.

math.NA↗

arXiv2024

An electromechanics-driven fluid dynamics model for the simulation of the whole human heart

We introduce a multiphysics and geometric multiscale computational model, suitable to describe the hemodynamics of the whole human heart, driven by a four-chamber electromechanical model. We first present a study on the calibration of the biophysically detailed RDQ20 activation model (Regazzoni et al., 2020) that is able to reproduce the physiological range of hemodynamic biomarkers. Then, we demonstrate that the ability of the force generation model to reproduce certain microscale mechanisms, such as the dependence of force on fiber shortening velocity, is crucial to capture the overall physiological mechanical and fluid dynamics macroscale behavior. This motivates the need for using multiscale models with high biophysical fidelity, even when the outputs of interest are relative to the macroscale. We show that the use of a high-fidelity electromechanical model, combined with a detailed calibration process, allows us to achieve remarkable biophysical fidelity in terms of both mechanical and hemodynamic quantities. Indeed, our electromechanical-driven CFD simulations - carried out on an anatomically accurate geometry of the whole heart - provide results that match the cardiac physiology both qualitatively (in terms of flow patterns) and quantitatively (when comparing in silico results with biomarkers acquired in vivo). We consider the pathological case of left bundle branch block, and we investigate the consequences that an electrical abnormality has on cardiac hemodynamics thanks to our multiphysics integrated model. The computational model that we propose can faithfully predict a delay and an increasing wall shear stress in the left ventricle in the pathological condition. The interaction of different physical processes in an integrated framework allows us to faithfully describe and model this pathology, by capturing and reproducing the intrinsic multiphysics nature of the human heart.

math.NA↗

arXiv2024

Discovering Artificial Viscosity Models for Discontinuous Galerkin Approximation of Conservation Laws using Physics-Informed Machine Learning

Finite element-based high-order solvers of conservation laws offer large accuracy but face challenges near discontinuities due to the Gibbs phenomenon. Artificial viscosity is a popular and effective solution to this problem based on physical insight. In this work, we present a physics-informed machine learning algorithm to automate the discovery of artificial viscosity models in a non-supervised paradigm. The algorithm is inspired by reinforcement learning and trains a neural network acting cell-by-cell (the viscosity model) by minimizing a loss defined as the difference with respect to a reference solution thanks to automatic differentiation. This enables a dataset-free training procedure. We prove that the algorithm is effective by integrating it into a state-of-the-art Runge-Kutta discontinuous Galerkin solver. We showcase several numerical tests on scalar and vectorial problems, such as Burgers' and Euler's equations in one and two dimensions. Results demonstrate that the proposed approach trains a model that is able to outperform classical viscosity models. Moreover, we show that the learnt artificial viscosity model is able to generalize across different problems and parameters.

math.NA↗

arXiv2024

An integrated heart-torso electromechanical model for the simulation of electrophysiogical outputs accounting for myocardial deformation

When generating in-silico clinical electrophysiological outputs, such as electrocardiograms (ECGs) and body surface potential maps (BSPMs), mathematical models have relied on single physics, i.e. of the cardiac electrophysiology (EP), neglecting the role of the heart motion. Since the heart is the most powerful source of electrical activity in the human body, its motion dynamically shifts the position of the principal electrical sources in the torso, influencing electrical potential distribution and potentially altering the EP outputs. In this work, we propose a computational model for the simulation of ECGs and BSPMs by coupling a cardiac electromechanical model with a model that simulates the propagation of the EP signal in the torso, thanks to a flexible numerical approach, that simulates the torso domain deformation induced by the myocardial displacement. Our model accounts for the major mechano-electrical feedbacks, along with unidirectional displacement and potential couplings from the heart to the surrounding body. For the numerical discretization, we employ a versatile intergrid transfer operator that allows for the use of different Finite Element spaces to be used in the cardiac and torso domains. Our numerical results are obtained on a realistic 3D biventricular-torso geometry, and cover both cases of sinus rhythm and ventricular tachycardia (VT), solving both the electromechanical-torso model in dynamical domains, and the classical electrophysiology-torso model in static domains. By comparing standard 12-lead ECG and BSPMs, we highlight the non-negligible effects of the myocardial contraction on the EP-outputs, especially in pathological conditions, such as the VT.

math.NA↗

arXiv2023

lifex-cfd: an open-source computational fluid dynamics solver for cardiovascular applications

Computational fluid dynamics (CFD) is an important tool for the simulation of the cardiovascular function and dysfunction. Due to the complexity of the anatomy, the transitional regime of blood flow in the heart, and the strong mutual influence between the flow and the physical processes involved in the heart function, the development of accurate and efficient CFD solvers for cardiovascular flows is still a challenging task. In this paper we present lifex-cfd, an open-source CFD solver for cardiovascular simulations based on the lifex finite element library, written in modern C++ and exploiting distributed memory parallelism. We model blood flow in both physiological and pathological conditions via the incompressible Navier-Stokes equations, accounting for moving cardiac valves, moving domains, and transition-to-turbulence regimes. In this paper, we provide an overview of the underlying mathematical formulation, numerical discretization, implementation details and examples on how to use lifex-cfd. We verify the code through rigorous convergence analyses, and we show its almost ideal parallel speedup. We demonstrate the accuracy and reliability of the numerical methods implemented through a series of idealized and patient-specific vascular and cardiac simulations, in different physiological flow regimes. The lifex-cfd source code is available under the LGPLv3 license, to ensure its accessibility and transparency to the scientific community, and to facilitate collaboration and further developments.

physics.flu-dyn↗