arXiv subjects

Luca Giomi

Publications and source records attributed to Luca Giomi.

At least 55 records · Page 3Linked to original sources

arXiv2019

Statistical Properties of Autonomous Flows in 2D Active Nematics

We study the dynamics of a tunable 2D active nematic liquid crystal composed of microtubules and kinesin motors confined to an oil-water interface. Kinesin motors continuously inject mechanical energy into the system through ATP hydrolysis, powering the relative microscopic sliding of adjacent microtubules, which in turn generates macroscale autonomous flows and chaotic dynamics. We use particle image velocimetry to quantify two-dimensional flows of active nematics and extract their statistical properties. In agreement with the hydrodynamic theory, we find that the vortex areas comprising the chaotic flows are exponentially distributed, which allows us to extract the characteristic system length scale. We probe the dependence of this length scale on the ATP concentration, which is the experimental knob that tunes the magnitude of the active stress. Our data suggest a possible mapping between the ATP concentration and the active stress that is based on the Michaelis-Menten kinetics that governs motion of individual kinesin motors.

cond-mat.soft↗

arXiv2019

Topotaxis of active Brownian particles

Recent experimental studies have demonstrated that cellular motion can be directed by topographical gradients, such as those resulting from spatial variations in the features of a micropatterned substrate. This phenomenon, known as topotaxis, is especially prominent among cells persistently crawling within a spatially varying distribution of cell-sized obstacles. In this article we introduce a toy model of topotaxis based on active Brownian particles constrained to move in a lattice of obstacles, with space-dependent lattice spacing. Using numerical simulations and analytical arguments, we demonstrate that topographical gradients introduce a spatial modulation of the particles' persistence, leading to directed motion toward regions of higher persistence. Our results demonstrate that persistent motion alone is sufficient to drive topotaxis and could serve as a starting point for more detailed studies on self-propelled particles and cells.

cond-mat.soft↗

arXiv2019

Thermodynamic equilibrium of binary mixtures on curved surfaces

We study the global influence of curvature on the free energy landscape of two-dimensional binary mixtures confined on closed surfaces. Starting from a generic effective free energy, constructed on the basis of symmetry considerations and conservation laws, we identify several model-independent phenomena, such as a curvature-dependent line tension and local shifts in the binodal concentrations. To shed light on the origin of the phenomenological parameters appearing in the effective free energy, we further construct a lattice-gas model of binary mixtures on non-trivial substrates, based on the curved-space generalization of the two-dimensional Ising model. This allows us to decompose the interaction between the local concentration of the mixture and the substrate curvature into four distinct contributions, as a result of which the phase diagram splits into critical sub-diagrams. The resulting free energy landscape can admit, as stable equilibria, strongly inhomogeneous mixed phases, which we refer to as antimixed states below the critical temperature. We corroborate our semi-analytical findings with phase-field numerical simulations on realistic curved lattices. Despite this work being primarily motivated by recent experimental observations of multi-component lipid vesicles supported by colloidal scaffolds, our results are applicable to any binary mixture confined on closed surfaces of arbitrary geometry.

cond-mat.soft↗

arXiv2019

Mechanical interplay between cell shape and actin cytoskeleton organization

We investigate the mechanical interplay between the spatial organization of the actin cytoskeleton and the shape of animal cells adhering on micropillar arrays. Using a combination of analytical work, computer simulations and in vitro experiments, we demonstrate that the orientation of the stress fibers strongly influences the geometry of the cell edge. In the presence of a uniformly aligned cytoskeleton, the cell edge can be well approximated by elliptical arcs, whose eccentricity reflects the degree of anisotropy of the cell's internal stresses. Upon modeling the actin cytoskeleton as a nematic liquid crystal, we further show that the geometry of the cell edge feeds back on the organization of the stress fibers by altering the length scale at which these are confined. This feedback mechanism is controlled by a dimensionless number, the anchoring number, representing the relative weight of surface-anchoring and bulk-aligning torques. Our model allows to predict both cellular shape and the internal structure of the actin cytoskeleton and is in good quantitative agreement with experiments on fibroblastoid (GD$β$1,GD$β$3) and epithelioid (GE$β$1, GE$β$3) cells.

physics.bio-ph↗

arXiv2018

Cytoskeletal Anisotropy Controls Geometry and Forces of Adherent Cells

We investigate the geometrical and mechanical properties of adherent cells characterized by a highly anisotropic actin cytoskeleton. Using a combination of theoretical work and experiments on micropillar arrays, we demonstrate that the shape of the cell edge is accurately described by elliptical arcs, whose eccentricity expresses the degree of anisotropy of the internal cell stresses. This results in a spatially varying tension along the cell edge, that significantly affects the traction forces exerted by the cell on the substrate. Our work highlights the strong interplay between cell mechanics and geometry and paves the way towards the reconstruction of cellular forces from geometrical data.

physics.bio-ph↗

arXiv2018

Geometry and mechanics of microdomains in growing bacterial colonies

Bacterial colonies are abundant on living and nonliving surfaces and are known to mediate a broad range of processes in ecology, medicine, and industry. Although extensively researched, from single cells to demographic scales, a comprehensive biomechanical picture, highlighting the cell-to-colony dynamics, is still lacking. Here, using molecular dynamics simulations and continuous modeling, we investigate the geometrical and mechanical properties of a bacterial colony growing on a substrate with a free boundary and demonstrate that such an expanding colony self-organizes into a "mosaic" of microdomains consisting of highly aligned cells. The emergence of microdomains is mediated by two competing forces: the steric forces between neighboring cells, which favor cell alignment, and the extensile stresses due to cell growth that tend to reduce the local orientational order and thereby distort the system. This interplay results in an exponential distribution of the domain areas and sets a characteristic length scale proportional to the square root of the ratio between the system orientational stiffness and the magnitude of the extensile active stress. Our theoretical predictions are finally compared with experiments with freely growing E. coli microcolonies, finding quantitative agreement.

cond-mat.soft↗

arXiv2018

Interface geometry of binary mixtures on curved substrates

Motivated by recent experimental work on multicomponent lipid membranes supported by colloidal scaffolds, we report an exhaustive theoretical investigation of the equilibrium configurations of binary mixtures on curved substrates. Starting from the Jülicher-Lipowsky generalization of the Canham-Helfrich free energy to multicomponent membranes, we derive a number of exact relations governing the structure of an interface separating two lipid phases on arbitrarily shaped substrates and its stability. We then restrict our analysis to four classes of surfaces of both applied and conceptual interest: the sphere, axisymmetric surfaces, minimal surfaces and developable surfaces. For each class we investigate how the structure of the geometry and topology of the interface is affected by the shape of the substrate and we make various testable predictions. Our work sheds light on the subtle interaction mechanism between membrane shape and its chemical composition and provides a solid framework for interpreting results from experiments on supported lipid bilayers.

cond-mat.soft↗

arXiv2018

Geometric pinning and antimixing in scaffolded lipid vesicles

Unravelling the physical mechanisms behind the organisation of lipid domains is a central goal in cell biology and membrane biophysics. Previous studies on cells and model lipid bilayers featuring phase-separated domains found an intricate interplay between the membrane geometry and its chemical composition. However, the lack of a model system with simultaneous control over the membrane shape and conservation of its composition precluded a fundamental understanding of curvature-induced effects. Here, we present a new class of multicomponent vesicles supported by colloidal scaffolds of designed shape. We find that the domain composition adapts to the geometry, giving rise to a novel "antimixed" state. Theoretical modelling allowed us to link the pinning of domains by regions of high curvature to the material parameters of the membrane. Our results provide key insights into the phase separation of cellular membranes and on curved surfaces in general.

cond-mat.soft↗

arXiv2017

Cross-talk between topological defects in different fields revealed by nematic microfluidics

Topological defects are singularities in material fields that play a vital role across a range of systems: from cosmic microwave background polarization to superconductors, and biological materials. Although topological defects and their mutual interactions have been extensively studied, little is known about the interplay between defects in different fields -- especially when they co-evolve -- within the same physical system. Here, using nematic microfluidics, we study the cross-talk of topological defects in two different material fields -- the velocity field and the molecular orientational field. Specifically, we generate hydrodynamic stagnation points of different topological charges at the center of star-shaped microfluidic junctions, which then interact with emergent topological defects in the orientational field of the nematic director. We combine experiments, and analytical and numerical calculations to demonstrate that a hydrodynamic singularity of given topological charge can nucleate a nematic defect of equal topological charge, and corroborate this by creating $-1$, $-2$ and $-3$ topological defects in $4-$, $6-$, and $8-$arm junctions. Our work is an attempt toward understanding materials that are governed by distinctly multi-field topology, where disparate topology-carrying fields are coupled, and concertedly determine the material properties and response.

cond-mat.soft↗

arXiv2016

Orientational properties of nematic disclinations

Topological defects play a pivotal role in the physics of liquid crystals and represent one of the most prominent and well studied aspects of mesophases. While in two-dimensional nematics, disclinations are traditionally treated as point-like objects, recent experimental studies on active nematics have suggested that half-strength disclinations might in fact possess a polar structure. In this article, we provide a precise definition of polarity for half-strength nematic disclinations, we introduce a simple and robust method to calculate this quantity from experimental and numerical data and we investigate how the orientational properties of half-strength disclinations affect their relaxational dynamics.

cond-mat.soft↗

arXiv2015

Geometry and topology of turbulence in active nematics

The problem of low Reynolds number turbulence in active nematic fluids is theoretically addressed. Using numerical simulations I demonstrate that an incompressible turbulent flow, in two-dimensional active nematics, consists of an ensemble of vortices whose areas are exponentially distributed within a range of scales. Building on this evidence, I construct a mean-field theory of active turbulence by which several measurable quantities, including the spectral densities and the correlation functions, can be analytically calculated. Because of the profound connection between the flow geometry and the topological properties of the nematic director, the theory sheds light on the mechanisms leading to the proliferation of topological defects in active nematics and provides a number of testable predictions. A hypothesis, inspired by Onsager's statistical hydrodynamics, is finally introduced to account for the equilibrium probability distribution of the vortex sizes.

cond-mat.soft↗

arXiv2014

On shape dependence of holographic mutual information in AdS4

We study the holographic mutual information in AdS4 of disjoint spatial domains in the boundary which are delimited by smooth closed curves. A numerical method which approximates a local minimum of the area functional through triangulated surfaces is employed. After some checks of the method against existing analytic results for the holographic entanglement entropy, we compute the holographic mutual information of equal domains delimited by ellipses, superellipses or the boundaries of two dimensional spherocylinders, finding also the corresponding transition curves along which the holographic mutual information vanishes.

hep-th↗

arXiv2014

Topology and Dynamics of Active Nematic Vesicles

Engineering synthetic materials that mimic the remarkable complexity of living organisms is a fundamental challenge in science and technology. We study the spatiotemporal patterns that emerge when an active nematicfilm of microtubules and molecular motors is encapsulated within a shape-changing lipid vesicle. Unlike in equilibrium systems, where defects are largely static structures, in active nematics defects move spontaneously and can be described as self-propelled particles. The combination of activity, topological constraints and vesicle deformability produces a myriad of dynamical states. We highlight two dynamical modes: a tunable periodic state that oscillates between two defect configurations, and shape-changing vesicles with streaming filopodia-like protrusions. These results demonstrate how biomimetic materials can be obtained when topological constraints are used to control the non-equilibrium dynamics of active matter.

cond-mat.soft↗

arXiv2014

Defect dynamics in active nematics

Topological defects are distinctive signatures of liquid crystals. They profoundly affect the viscoelastic behavior of the fluid by constraining the orientational structure in a way that inevitably requires global changes not achievable with any set of local deformations. In active nematic liquid crystals topological defects not only dictate the global structure of the director, but also act as local sources of motion, behaving as self-propelled particles. In this article we present a detailed analytical and numerical study of the mechanics of topological defects in active nematic liquid crystals.

cond-mat.soft↗

arXiv2013

Defect annihilation and proliferation in active nematics

Liquid crystals inevitably possess topological defect excitations generated through boundary conditions, applied fields or in quenches to the ordered phase. In equilibrium pairs of defects coarsen and annihilate as the uniform ground state is approached. Here we show that defects in active liquid crystals exhibit profoundly different behavior, depending on the degree of activity and its contractile or extensile character. While contractile systems enhance the annihilation dynamics of passive systems, extensile systems act to drive defects apart so that they swarm around in the manner of topologically well-characterized self-propelled particles. We develop a simple analytical model for the defect dynamics which reproduces the key features of both the numerical solutions and recent experiments on microtuble-kinesin assemblies.

cond-mat.soft↗

arXiv2013

Softly Constrained Films

The shape of materials is often subject to a number of geometric constraints that limit the size of the system or fix the structure of its boundary. In soft and biological materials, however, these constraints are not always hard, but are due to other physical mechanisms that affect the overall force balance. A capillary film spanning a flexible piece of wire or a cell anchored to a compliant substrate by mean of adhesive contacts are examples of these softly constrained systems in the macroscopic and microscopic world. In this article I review some of the important mathematical and physical developments that contributed to our understanding of shape formation in softly constrained films and their recent application to the mechanics of adherent cells.

cond-mat.soft↗

arXiv2013

Polymorphism and bistability in adherent cells

The optimal shapes attained by contractile cells on adhesive substrates are determined by the interplay between intracellular forces and adhesion with the extracellular matrix. We model the cell as a contractile film bounded by an elastic cortex and connected to the substrate via elastic links. When the adhesion sites are continuously distributed, optimal cell shape is constrained by the adhesion geometry, with a spread area sensitively dependent on the substrate stiffness and contractile tension. For discrete adhesion sites, equilibrium cell shape is convex at weak contractility, while developing local concavities at intermediate values of contractility. Increasing contractility beyond a critical value, controlled by mechanical and geometrical properties of adhesion, cell boundary undergoes a discontinuous transition to a star-shaped configuration with cusps and protrusions, accompanied by a region of bistability and hysteresis.

physics.bio-ph↗

arXiv2012

Hyperbolic Interfaces

Fluid interfaces, such as soap films, liquid droplets or lipid membranes, are known to give rise to several special geometries, whose complexity and beauty continue to fascinate us, as observers of the natural world, and challenge us as scientists. Here I show that a special class of surfaces of constant negative Gaussian curvature can be obtained in fluid interfaces equipped with an orientational ordered phase. These arise in various soft and biological materials, such as nematic liquid crystals, cytoskeletal assemblies, or hexatic colloidal suspensions. The purely hyperbolic morphology originates from the competition between surface tension, that reduces the area of the interface at the expense of increasing its Gaussian curvature, and the orientational elasticity of the ordered phase, that in turn suffers for the distortion induced by the underlying curvature.

cond-mat.soft↗