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Lucas K Johnson

Publications and source records attributed to Lucas K Johnson.

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Assessing the performance of spatial cross-validation approaches for models of spatially structured data

Evaluating models fit to data with internal spatial structure requires specific cross-validation (CV) approaches, because randomly selecting assessment data may produce assessment sets that are not truly independent of data used to train the model. Many spatial CV methodologies have been proposed to address this by forcing models to extrapolate spatially when predicting the assessment set. However, to date there exists little guidance on which methods yield the most accurate estimates of model performance. We conducted simulations to compare model performance estimates produced by five common CV methods fit to spatially structured data. We found spatial CV approaches generally improved upon resubstitution and V-fold CV estimates, particularly when approaches which combined assessment sets of spatially conjunct observations with spatial exclusion buffers. To facilitate use of these techniques, we introduce the `spatialsample` package which provides tooling for performing spatial CV as part of the broader tidymodels modeling framework.

stat.CO

Classification and mapping of low-statured 'shrubland' cover types in post-agricultural landscapes of the US Northeast

Novel plant communities reshape landscapes and pose challenges for land cover classification and mapping that can constrain research and stewardship efforts. In the US Northeast, emergence of low-statured woody vegetation, or shrublands, instead of secondary forests in post-agricultural landscapes is well-documented by field studies, but poorly understood from a landscape perspective, which limits the ability to systematically study and manage these lands. To address gaps in classification/mapping of low-statured cover types where they have been historically rare, we developed models to predict shrubland distributions at 30m resolution across New York State (NYS), using a stacked ensemble combining a random forest, gradient boosting machine, and artificial neural network to integrate remote sensing of structural (airborne LIDAR) and optical (satellite imagery) properties of vegetation cover. We first classified a 1m canopy height model (CHM), derived from a patchwork of available LIDAR coverages, to define shrubland presence/absence. Next, these non-contiguous maps were used to train a model ensemble based on temporally-segmented imagery to predict shrubland probability for the entire study landscape (NYS). Approximately 2.5% of the CHM coverage area was classified as shrubland. Models using Landsat predictors trained on the classified CHM were effective at identifying shrubland (test set AUC=0.893, real-world AUC=0.904), in discriminating between shrub/young forest and other cover classes, and produced qualitatively sensible maps, even when extending beyond the original training data. Our results suggest that incorporation of airborne LiDAR, even from a discontinuous patchwork of coverages, can improve land cover classification of historically rare but increasingly prevalent shrubland habitats across broader areas.

cs.CV