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Luis A. Barboza

Publications and source records attributed to Luis A. Barboza.

18 recordsLinked to original sources

Amortized Bayesian Inference for Spatio-Temporal Extremes: A Copula Factor Model with Autoregression

We develop a Bayesian spatio-temporal framework for extreme-value analysis that augments a hierarchical copula model with an autoregressive factor to capture residual temporal dependence in threshold exceedances. The factor can be specified as spatially varying or spatially constant, and the scale parameter incorporates scientifically relevant covariates (e.g., longitude, latitude, altitude), enabling flexible representation of geographic heterogeneity. To avoid the computational burden of the full censored likelihood, we design a Gibbs sampler that embeds amortized neural posterior estimation within each parameter block, yielding scalable inference with full posterior uncertainty for parameters, predictive quantiles, and return levels. Simulation studies demonstrate that the approach improves MCMC mixing and estimation accuracy relative to baseline specifications, particularly when using moderately more complex network architectures, while preserving heavy-tail behavior. We illustrate the methodology with daily precipitation in Guanacaste, Costa Rica, evaluating a suite of nested models and selecting the best-performing factor combination via out-of-sample diagnostics. The chosen specification reveals coherent spatial patterns in multi-year return periods and provides actionable information for infrastructure planning and climate-risk management in a tropical dry region strongly influenced by climatic factors. The proposed Gibbs scheme generalizes to other settings where parameters can be partitioned into inferentially homogeneous blocks and conditionals learned via amortized, likelihood-free methods.

stat.ME

Hurricane Impact Index for Assessing Direct and Indirect Hazards in Central America

Hurricanes rank among the most destructive natural hazards. They are complex phenomena that can cause both direct damage along their path and indirect impacts due to heavy rainfall and strong winds, with effects varying according to regional topography. In this paper, we propose a Hurricane Impact Index to assess both direct and indirect hazards, and we demonstrate its applicability to the Central American region. The index is constructed so that we can decompose these effects across multiple dimensions of time and space, enabling a detailed analysis of the intensity and distribution of hurricane impacts.

physics.ao-ph

Forecasting hospital discharges for respiratory conditions in Costa Rica using climate and pollution data

Respiratory diseases represent one of the most significant economic burdens on healthcare systems worldwide. The variation in the increasing number of cases depends greatly on climatic seasonal effects, socioeconomic factors, and pollution. Therefore, understanding these variations and obtaining precise forecasts allows health authorities to make correct decisions regarding the allocation of limited economic and human resources. This study aims to model and forecast weekly hospitalizations due to respiratory conditions in seven regional hospitals in Costa Rica using four statistical learning techniques (Random Forest, XGboost, Facebook's Prophet forecasting model, and an ensemble method combining the above methods), along with 22 climate change indices and aerosol optical depth as an indicator of pollution. Models are trained using data from 2000 to 2018 and are evaluated using data from 2019 as testing data. Reliable predictions are obtained for each of the seven regional hospitals

stat.AP

Comparison of indicators to evaluate the performance of climate models

The evaluation of climate models is a crucial step in climate studies. It consists of quantifying the resemblance of model outputs to reference data to identify models with superior capacity to replicate specific climate variables. Clearly, the choice of the evaluation indicator significantly impacts the results, underscoring the importance of selecting an indicator that properly captures the characteristics of a "good model". This study examines the behavior of six indicators, considering spatial correlation, distribution mean, variance, and shape. A new multi-component measure was selected based on these criteria to assess the performance of 48 CMIP6 models in reproducing the annual seasonal cycle of precipitation, temperature, and teleconnection patterns in Central America. The top six models were determined using multi-criteria methods. It was found that even the best model reproduces one derived climatic variable poorly in this region. The proposed measure and selection method can contribute to enhancing the accuracy of climatological research based on climate models.

physics.ao-ph

Spatio-temporal Downscaling Emulator for Regional Climate Models: a Comparative Study

Regional Climate Models (RCM) describe the meso scale global atmospheric and oceanic dynamics and serve as dynamical downscaling models. In other words, RCMs use atmospheric and oceanic climate output from General Circulation Models (GCM) to develop a higher resolution climate output. They are computationally demanding and, depending on the application, require several orders of magnitude of computer time more than statistical climate downscaling. In this paper we describe how to use a spatio-temporal statistical model with varying coefficients (VC), as a downscaling emulator for a RCM using varying coefficients. In order to estimate the proposed model, two options are compared: INLA, and varycoef. We set up a simulation to compare the performance of both methods for building a statistical downscaling emulator for RCM, and then show that the emulator works properly for NARCCAP data. The results show that the model is able to estimate non-stationary marginal effects, which means that the downscaling output can vary over space. Furthermore, the model has flexibility to estimate the mean of any variable in space and time, and has good prediction results. INLA was the fastest method for all the cases, and the approximation with best accuracy to estimate the different parameters from the model and the posterior distribution of the response variable.

stat.AP

Bayesian spatio-temporal model with INLA for dengue fever risk prediction in Costa Rica

Due to the rapid geographic spread of the Aedes mosquito and the increase in dengue incidence, dengue fever has been an increasing concern for public health authorities in tropical and subtropical countries worldwide. Significant challenges such as climate change, the burden on health systems, and the rise of insecticide resistance highlight the need to introduce new and cost-effective tools for developing public health interventions. Various and locally adapted statistical methods for developing climate-based early warning systems have increasingly been an area of interest and research worldwide. Costa Rica, a country with micro-climates and endemic circulation of the dengue virus (DENV) since 1993, provides ideal conditions for developing projection models with the potential to help guide public health efforts and interventions to control and monitor future dengue outbreaks.

stat.AP

Common patterns between dengue cases, climate, and local environmental variables in Costa Rica: A Wavelet Approach

Throughout history, prevention and control of dengue transmission have challenged public health authorities worldwide. In the last decades, the interaction of multiple factors, such as environmental and climate variability, has influenced increments in incidence and geographical spread of the virus. In Costa Rica, a country characterized by multiple microclimates separated by short distances, dengue has been endemic since its introduction in 1993. Understanding the role of climatic and environmental factors in the seasonal and inter-annual variability of disease spread is essential to develop effective surveillance and control efforts. In this study, we conducted a wavelet time series analysis of weekly climate, local environmental variables, and dengue cases (2001-2019) from 32 cantons in Costa Rica to identify significant periods (e.g., annual, biannual) in which climate and environmental variables co-varied with dengue cases. Wavelet coherence analysis was used to characterize seasonality, multi-year outbreaks, and relative delays between the time series. Results show that dengue outbreaks occurring every 3 years in cantons located in the country's Central, North, and South Pacific regions were highly coherent with the Oceanic Niño 3.4 and the Tropical North Caribbean Index (TNA). Dengue cases were in phase with El Niño 3.4 and TNA, with El Niño 3.4 ahead of dengue cases by roughly nine months and TNA ahead by less than three months. Annual dengue outbreaks were coherent with local environmental variables (NDWI, EVI, Evapotranspiration, and Precipitation) in most cantons except those located in the Central, South Pacific, and South Caribbean regions of the country. The local environmental variables were in phase with dengue cases and were ahead by around three months.

q-bio.PE

A multilayer network model of Covid-19: implications in public health policy in Costa Rica

Successful partnerships between researchers, experts and public health authorities has been critical to navigate the challenges of the Covid-19 pandemic worldwide. In Costa Rica, we constructed a multilayer network model that incorporates a diverse contact structure for each individual (node). The different layers which constitute the individual's contact structure include: family, friends, and sporadic interactions. Different scenarios were constructed to forecast and have a better understanding of the possible routes of the pandemic in the country, given the information that was available at the time and the different measures implemented by the health authorities of the country. Strong collaboration within our diverse team allowed using the model to tailor advice on contingency measures to health authorities. The model helped develop informed strategies to prepare the public health system in Costa Rica. The development, evolution and applications of a multilayer network model of Covid-19 in the adoption of sanitary measures in Costa Rica has been an example of the potential of such partnerships.

physics.soc-ph

Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques

Dengue fever is a vector-borne disease mostly endemic to tropical and subtropical countries that affect millions every year and is considered a significant burden for public health. Its geographic distribution makes it highly sensitive to climate conditions. Here, we explore the effect of climate variables using the Generalized Additive Model for location, scale, and shape (GAMLSS) and Random Forest (RF) machine learning algorithms. Using the reported number of dengue cases, we obtained reliable predictions. The uncertainty of the predictions was also measured. These predictions will serve as input to health officials to further improve and optimize the allocation of resources prior to dengue outbreaks.

cs.CY

The Role of SARS-CoV-2 Testing on Hospitalizations in California

The rapid spread of the new SARS-CoV-2 virus triggered a global health crisis disproportionately impacting people with pre-existing health conditions and particular demographic and socioeconomic characteristics. One of the main concerns of governments has been to avoid the overwhelm of health systems. For this reason, they have implemented a series of non-pharmaceutical measures to control the spread of the virus, with mass tests being one of the most effective control. To date, public health officials continue to promote some of these measures, mainly due to delays in mass vaccination and the emergence of new virus strains. In this study, we studied the association between COVID-19 positivity rate and hospitalization rates at the county level in California using a mixed linear model. The analysis was performed in the three waves of confirmed COVID-19 cases registered in the state to September 2021. Our findings suggest that test positivity rate is consistently associated with hospitalization rates at the county level for all waves of study. Demographic factors that seem to be related with higher hospitalization rates changed over time, as the profile of the pandemic impacted different fractions of the population in counties across California.

stat.AP

Projecting the Impact of Covid-19 Variants and Vaccination Strategies in Disease Transmission using a Multilayer Network Model in Costa Rica

For countries starting to receive steady supplies of vaccines against SARS-CoV-2, the course of Covid-19 for the following months will be determined by the emergence of new variants and successful roll-out of vaccination campaigns. To anticipate this scenario, we used a multilayer network model developed to forecast the transmission dynamics of Covid-19 in Costa Rica, and to estimate the impact of the introduction of the Delta variant in the country, under two plausible vaccination scenarios, one sustaining Costa Rica's July 2021 vaccination pace of 30,000 doses per day and with high acceptance from the population and another with declining vaccination pace to 13,000 doses per day and with lower acceptance. Results suggest that the introduction and gradual dominance of the Delta variant would increase Covid-19 hospitalizations and ICU admissions between $35\%$ and $33.25\%$, from August 2021 to December 2021, depending on vaccine administration and acceptance. In the presence of the Delta variant, new Covid-19 hospitalizations and ICU admission would experience an average increase of $24.26\%$ and $27.19\%$ respectively in the same period if the vaccination pace drops. Our results can help decision-makers better prepare for the COVID-19 pandemic in the months to come.

q-bio.PE

Wavelet Analysis of Dengue Incidence and its Correlation with Weather and Vegetation Variables in Costa Rica

Dengue represents a serious public health problem in tropical and subtropical regions worldwide. The number of dengue cases and its geographical expansion has increased in recent decades, driven mostly after by social and environmental factors. In Costa Rica, it has been endemic since it was first introduced in 1993. In this article, wavelet analyzes (wavelet power spectrum and wavelet coherence) were performed to detect and quantify dengue periodicity and describe patterns of synchrony between dengue incidence and climatic and environmental factors: Normalized Difference Water Index, Enhanced Vegetation Index, Normalized Difference Vegetation Index, Tropical North Atlantic indices, Land Surface Temperature, and El Niño Southern Oscillation indices in 32 different cantons, using dengue surveillance from 2000 to 2019. Results showed that the dengue dominant cycles are in periods of 1, 2, and 3 years. The wavelet coherence analysis showed that the vegetation indices are correlated with dengue incidence in places located in the central and Northern Pacific of the country in the period of 1 year. Climatic variables such as El Niño 3, 3.4, 4, showed a strong correlation with dengue incidence in the period of 3 years and the Tropical North Atlantic is correlated with dengue incidence in the period of 1 year. Land Surface Temperature showed a strong correlation with dengue time series in the 32 cantons.

q-bio.PE

A Multilayer Network Model implementation for Covid-19

We present a numerical implementation for a multilayer network used to model the transmission of Covid-19 or other diseases with a similar transmission mechanism. The model incorporates different contact types between individuals (household, social contacts, and strangers), which allows flexibility compared to standard SIR type models. The algorithm described in this paper is a simplification of the model used to give public health authorities an additional tool for the decision-making process in Costa Rica, by simulating extensive possible scenarios and projections.

physics.soc-ph

The role of mobility and sanitary measures on Covid-19 in Costa Rica, March through July 2020

The aim of this paper is to infer the effects that changes on human mobility had on the transmission dynamics during the first four months of the SARS-CoV-2 outbreak in Costa Rica, before community transmission was established in the country. By using parametric and non parametric detection change-point techniques we were able to identify two different periods where at least the trend and variability of new daily cases significantly changed. In order to combine this information with population movement, we use data from Google Mobility Trends that allow us to estimate the lag between the rate of new daily cases and each of the categories established by Google. The information is then used to establish an association between changes in population mobility and the sanitary measures taken during the study period.

stat.AP

Climate-driven statistical models as effective predictors of local dengue incidence in Costa Rica: A Generalized Additive Model and Random Forest approach

Climate has been an important factor in shaping the distribution and incidence of dengue cases in tropical and subtropical countries. In Costa Rica, a tropical country with distinctive micro-climates, dengue has been endemic since its introduction in 1993, inflicting substantial economic, social, and public health repercussions. Using the number of dengue reported cases and climate data from 2007-2017, we fitted a prediction model applying a Generalized Additive Model (GAM) and Random Forest (RF) approach, which allowed us to retrospectively predict the relative risk of dengue in five climatological diverse municipalities around the country.

stat.ML

Efficient Reconstructions of Common Era Climate via Integrated Nested Laplace Approximations

Paleoclimate reconstruction on the Common Era (1-2000AD) provide critical context for recent warming trends. This work leverages integrated nested Laplace approximations (INLA) to conduct inference under a Bayesian hierarchical model using data from three sources: a state-of-the-art prox database (PAGES 2k), surface temperature observations (HadCRUT4), and latest estimates of external forcings. INLA's computational efficiency allows to explore several model formulations (with or without forcings, explicitly modeling internal variability or not), as well as five data reduction techniques. Two different validation exercises find a small impact of data reduction choices, but a large impact for model choice, with best results for the two models that incorporate external forcings. These models confirm that man-made greenhouse gas emissions are the largest contributor to temperature variability over the Common Era, followed by volcanic forcing. Solar effects are indistinguishable from zero. INLA provide an efficient way to estimate the posterior mean, comparable with the much costlier Monte Carlo Markov Chain procedure, but with wider uncertainty bounds. We recommend using it for exploration of model designs, but full MCMC solutions should be used for proper uncertainty quantification.

stat.AP

Comparative Analysis of Dengue versus Chikungunya Outbreaks in Costa Rica

For decades, dengue virus has been a cause of major public health concern in Costa Rica, due to its landscape and climatic conditions that favor the circumstances in which the vector, Aedes aegypti, thrives. The emergence and introduction throughout tropical and subtropical countries of the chikungunya virus, as of 2014, challenged Costa Rican health authorities to provide a correct diagnosis since it is also transmitted by the same vector and infected hosts may share similar symptoms. We study the 2015-2016 dengue and chikungunya outbreaks in Costa Rica while establishing how point estimates of epidemic parameters for both diseases compare to one another. Longitudinal weekly incidence reports of these outbreaks signal likely misdiagnosis of infected individuals: underreporting of chikungunya cases, while overreporting cases of dengue. Our comparative analysis is formulated with a single-outbreak deterministic model that features an undiagnosed class. Additionally, we also used a genetic algorithm in the context of weighted least squares to calculate point estimates of key model parameters and initial conditions, while formally quantifying misdiagnosis.

q-bio.PE

Parameter Estimation of Gaussian Stationary Processes using the Generalized Method of Moments

We consider the class of all stationary Gaussian process with explicit parametric spectral density. Under some conditions on the autocovariance function, we defined a GMM estimator that satisfies consistency and asymptotic normality, using the Breuer-Major theorem and previous results on ergodicity. This result is applied to the joint estimation of the three parameters of a stationary Ornstein-Uhlenbeck (fOU) process driven by a fractional Brownian motion. The asymptotic normality of its GMM estimator applies for any H in (0,1) and under some restrictions on the remaining parameters. A numerical study is performed in the fOU case, to illustrate the estimator's practical performance when the number of datapoints is moderate.

math.ST