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Luisa Ferrari

Publications and source records attributed to Luisa Ferrari.

7 recordsLinked to original sources

Informed Asymmetric Dirichlet Priors for Multivariate Bernoulli Mixture Models

Clustering multivariate binary data is of interest in many scientific fields, including ecology, biomedicine, and social policy. Beyond heuristic clustering algorithms, such data can be modelled using multivariate Bernoulli mixture models. Many Bayesian implementations of these models involve a trade-off between computational efficiency and full posterior inference. We propose instead a Bayesian approach able to provide both aspects. The method fixes the total number of components to a large value and employs an asymmetric Dirichlet prior on the mixture weights. The asymmetric Dirichlet hyperparameters are elicited using the popular Penalized Complexity prior framework, which provides an intuitive way for users to inform the induced distribution of the number of clusters. An efficient MCMC algorithm is then developed to fit the model. Simulations and real-world applications demonstrate that the method is competitive with existing alternatives and can outperform them in certain settings. The proposal is illustrated using an ecological dataset about presence-absence of species across multiple sites, where cluster-specific parameters are modelled on the basis of environmental conditions. Overall, the proposed method provides a computationally efficient, fully Bayesian, and interpretable framework for clustering multivariate binary data, with potential applications across diverse scientific domains.

stat.ME

Bayesian Species Distribution Models using Hierarchical Decomposition Priors

Understanding the relative contributions of environmental, spatial, and temporal processes in shaping species distribution is a central objective in ecology. Bayesian species distribution models (SDMs) offer a flexible framework for this task, yet prior specification for variance components remains challenging. To address this issue, we adapt the Hierarchical Decomposition (HD) prior framework to latent Gaussian SDMs, enabling direct and transparent prior control over variance partitioning. The HD approach reparametrizes variances into a total variance and a set of interpretable proportions, structured through a decomposition tree that reflects both model architecture and ecologically meaningful groupings of effects. We discuss a principled approach for a default tree design tailored to SDMs and a practical workflow for the step-by-step implementation of the method. The framework is illustrated using presence--absence data for 39 demersal fish species from the NOAA Northeast Fisheries Science Center fall bottom trawl survey. Results demonstrate predictive performance comparable to established priors, while providing substantially improved interpretability and transparency in variance attribution and prior sensitivity analysis.

stat.AP

A Standardization Procedure to Incorporate Variance Partitioning Based Priors in Latent Gaussian Models

Latent Gaussian Models (LGMs) are a subset of Bayesian Hierarchical models where Gaussian priors, conditional on variance parameters, are assigned to all effects in the model. LGMs are employed in many fields for their flexibility and computational efficiency. However, practitioners find prior elicitation on the variance parameters challenging because of a lack of intuitive interpretation for them. Recently, several papers have tackled this issue by rethinking the model in terms of variance partitioning (VP) and assigning priors to parameters reflecting the relative contribution of each effect to the total variance. So far, the class of priors based on VP has been mainly deployed for random effects and fixed effects separately. This work presents a novel standardization procedure that expands the applicability of VP priors to a broader class of LGMs, including both fixed and random effects. We describe the steps required for standardization through various examples, with a particular focus on the popular class of intrinsic Gaussian Markov random fields (IGMRFs). The practical advantages of standardization are demonstrated with simulated data and a real dataset on survival analysis.

stat.ME

Synthesis of a mesoscale ordered 2D-conjugated polymer with semiconducting properties

2D materials with high charge carrier mobility and tunable electronic band gaps have attracted intense research effort for their potential use as active components in nanoelectronics. 2D-conjugated polymers (2DCP) constitute a promising sub-class due to the fact that the electronic band structure can be manipulated by varying the molecular building blocks, while at the same time preserving the key features of 2D materials such as Dirac cones and high charge mobility. The major challenge for their use in technological applications is to fabricate mesoscale ordered 2DCP networks since current synthetic routes yield only small domains with a high density of defects. Here we demonstrate the synthesis of a mesoscale ordered 2DCP with semiconducting properties and Dirac cone structures via Ullmann coupling on Au(111). This material has been obtained by combining rigid azatriangulene precursors and a hot dosing approach which favours molecular diffusion and reduces the formation of voids in the network. These results open opportunities for the synthesis of 2DCP Dirac cone materials and their integration into devices.

cond-mat.mtrl-sci

Pandemic Data Quality Modelling: A Bayesian Approach

When pandemics like COVID-19 spread around the world, the rapidly evolving situation compels officials and executives to take prompt decisions and adapt policies depending on the current state of the disease. In this context, it is crucial for policymakers to have always a firm grasp on what is the current state of the pandemic, and to envision how the number of infections and possible deaths is going to evolve over the next weeks. However, as in many other situations involving compulsory registration of sensitive data from multiple collectors, cases might be reported with errors, often with delays deferring an up-to-date view of the state of things. Errors in collecting new cases affect the overall mortality, resulting in excess deaths reported by official statistics only months later. In this paper, we provide tools for evaluating the quality of pandemic mortality data. We accomplish this through a Bayesian approach accounting for the excess mortality pandemics might bring with respect to the normal level of mortality in the population.

stat.AP

Modelling provincial Covid-19 epidemic data in Italy using an adjusted time-dependent SIRD model

In this paper we develop a predictive model for the spread of COVID-19 infection at a provincial (i.e. EU NUTS-3) level in Italy by using official data from the Italian Ministry of Health integrated with data extracted from daily official press conferences of regional authorities and from local newspaper websites. This integration is mainly concerned with COVID-19 cause specific death data which are not available at NUTS-3 level from open official data data channels. An adjusted time-dependent SIRD model is used to predict the behavior of the epidemic, specifically the number of susceptible, infected, deceased and recovered people. Predictive model performance is evaluated using comparison with real data.

stat.AP

COVID-Pro in Italy: a dashboard for a province-based analysis

This paper presents an dashboard developed to analyse the outbreak of the Covid-19 infection in Italy considering daily NUTS-3 data on positive cases provided by the Italian Ministry of Health and on deaths derived from Italian regional authorities' official press conferences. Descriptive time series plots are provided together with a map describing the spatial distribution of province cumulative cases and rates. A section on a proposed time-dependent adjusted SIRD model for NUTS-3 regions is also provided in the dashboard.

q-bio.PE