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Lukas Seifert

Publications and source records attributed to Lukas Seifert.

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SALTED: a symmetry-adapted machine-learning program for predicting electron-densities in molecules and materials

SALTED provides an open-source Python package for machine learning the quantum-mechanical electron density, $n(\mathbf{r})$, in molecular and condensed-phase systems based on input atomic coordinates and species. The program adopts a linear atom-centered decomposition of the electron density, which makes it highly transferable across diverse atomistic configurations sharing similar chemical environments. Because of this representation choice, SALTED is naturally interfaced with state-of-the-art electronic-structure programs based on atomic orbitals, namely CP2K, FHI-aims, and PySCF, from which reference electron-density data can be generated and used to train a model. The learning algorithm is based on a symmetry-adapted extension of Gaussian process regression, making SALTED especially efficient in small-data regimes. Thanks to the implementation of vector-field kernel functions, SALTED can also learn the first-order response of the electron density to applied electric fields, $\partial n(\mathbf{r})/\partial \mathbf{E}$. The application of SALTED within computational workflows has already shown its utility in a wide variety of contexts, including the calculation of polarization vectors and polarizability tensors, the accurate evaluation of Coulomb forces in QM/MM molecular-dynamics simulations, and electronic-structure studies of large-scale 2D materials.

cond-mat.mtrl-sci

When Less is More: A Story of Failing Bayesian Optimization Due to Additional Expert Knowledge

The compounding of plastics with recycled material remains a practical challenge, as the properties of the processed material is not as easy to control as with completely new raw materials. For a data scientist, it makes sense to plan the necessary experiments in the development of new compounds using Bayesian Optimization, an optimization approach based on a surrogate model that is known for its data efficiency and is therefore well suited for data obtained from costly experiments. Furthermore, if historical data and expert knowledge are available, their inclusion in the surrogate model is expected to accelerate the convergence of the optimization. In this article, we describe a use case in which the addition of data and knowledge has impaired optimization. We also describe the unsuccessful methods that were used to remedy the problem before we found the reasons for the poor performance and achieved a satisfactory result. We conclude with a lesson learned: additional knowledge and data are only beneficial if they do not complicate the underlying optimization goal.

cs.HC