arXiv subjects

Luke Bertels

Publications and source records attributed to Luke Bertels.

6 recordsLinked to original sources

arXiv2026

Exploring the use of quantum computing for facilitating spatially and temporally resolved models of a biological cell

Whole-cell simulation, modeling all of a cell's functional systems over its life cycle, is an outstanding challenge in computational biology. Even the simplest living cell contains thousands of interacting proteins and metabolites (on the order of trillions of atoms) whose full functional dynamics spans roughly five orders of magnitude in space (nm to $\mu$m) and nearly nineteen in time (fs to hours). Further, many of the governing physical and chemical properties remain incompletely characterized. Simulating such complex systems at fully atomistic resolution over a full cell cycle is computationally intractable on classical architectures, raising a central question: Can quantum computing offer a viable path to whole-cell simulations that integrate molecular- and systems-level complexity? This Perspective examines the potential of quantum computing across three hierarchical scales: atomistic-molecular modeling, metabolic and regulatory networks, and whole-cell spatial modeling. We present a complexity analysis comparing classical and quantum algorithms for representative biological problems, identifying regimes of substantial theoretical speedup under specified algorithmic assumptions. We highlight algorithmic developments designed to leverage both near-term exploratory and fault-tolerant quantum architectures, and discuss practical bottlenecks: data encoding overhead, system conditioning, measurement constraints, and hybrid quantum-HPC integration. Together, these results outline a roadmap for quantum-accelerated whole-cell modeling and the biological insights such multiscale frameworks may eventually enable.

quant-ph↗

arXiv2026

Scaling Sample-Based Quantum Diagonalization on GPU-Accelerated Systems using OpenMP Offload

Hybrid quantum-HPC algorithms advance research by delegating complex tasks to quantum processors and using HPC systems to orchestrate workflows and complementary computations. Sample-based quantum diagonalization (SQD) is a hybrid quantum-HPC method in which information from a molecular Hamiltonian is encoded into a quantum circuit for evaluation on a quantum computer. A set of measurements on the quantum computer yields electronic configurations that are filtered on the classical computer, which also performs diagonalization on the selected subspace and identifies configurations to be carried over to the next step in an iterative process. Diagonalization is the most demanding task for the classical computer. Previous studies used the Fugaku supercomputer and a highly scalable diagonalization code designed for CPUs. In this work, we describe our efforts to enable efficient scalable and portable diagonalization on heterogeneous systems using GPUs as the main compute engines based on the previous work. GPUs provide massive on-device thread-level parallelism that is well aligned with the algorithms used for diagonalization. We focus on the computation of ground-state energies and wavefunctions using the Davidson algorithm with a selected set of electron configurations. We describe the offload strategy, code transformations, and data-movement, with examples of measurements on the Frontier supercomputer and five other GPU accelerated systems. Our measurements show that GPUs provide an outstanding performance boost of order 100x on a per-node basis. This dramatically expedites the diagonalization step-essential for extracting ground and excited state energies-bringing the classical processing time down from hours to minutes.

cs.ET↗

arXiv2025

Toward the "platinum standard" of quantum chemistry on quantum computers: perturbative quadruple corrections in unitary coupled cluster theory

We propose a non-iterative, post hoc correction to the unitary coupled cluster theory with single, double, and triple excitations (UCCSDT) ansatz, which considers the leading-order effects of neglected quadruple excitations. We present two ways to derive this quadruples correction to UCCSDT, henceforth referred to as [Q-6], which leads to an improvement in the correlation energy shown to be correct through sixth-order in many-body perturbation theory (MBPT). A comparison between the UCC-based [Q-6] correction proposed in this work and analogous, "platinum" standard quadruples corrections proposed in conventional coupled cluster (CC) theory recognizes that [Q-6] is distinct from prior corrections since it is constructed entirely from internally connected components. Although Trotterized (t) and full operator variants of UCCSDT exhibit errors in scans of small molecule potential energy surfaces (PESs) that routinely exceed 1.6 mH, we find that t/UCCSDT[Q-6] is nevertheless able to achieve chemical accuracy as measured by the mean-unsigned error (MUE).

physics.chem-ph↗

arXiv2025

A Perspective on Quantum Computing Applications in Quantum Chemistry using 25--100 Logical Qubits

The intersection of quantum computing and quantum chemistry represents a promising frontier for achieving quantum utility in domains of both scientific and societal relevance. Owing to the exponential growth of classical resource requirements for simulating quantum systems, quantum chemistry has long been recognized as a natural candidate for quantum computation. This perspective focuses on identifying scientifically meaningful use cases where early fault-tolerant quantum computers, which are considered to be equipped with approximately 25--100 logical qubits, could deliver tangible impact. While recent advances in classical computing have pushed the boundaries of tractable simulations to unprecedented scales, this logical-qubit regime represents the first window where quantum devices can pursue qualitatively distinct strategies, such as polynomial-scaling phase estimation, direct simulation of quantum dynamics, and active-space embedding, that remain challenging for classical solvers, for instance, multireference charge-transfer and conical-intersection states central to photochemistry and materials design. We highlight near-term opportunities in algorithm and software design, discuss representative chemical problems suited for quantum acceleration, and propose strategic roadmaps and collaborative pathways for advancing practical quantum utility in quantum chemistry.

quant-ph↗

arXiv2025

Quantum-Centric Algorithm for Sample-Based Krylov Diagonalization

Approximating the ground state of many-body systems is a key computational bottleneck underlying important applications in physics and chemistry. The most widely known quantum algorithm for ground state approximation, quantum phase estimation, is out of reach of current quantum processors due to its high circuit-depths. Subspace-based quantum diagonalization methods offer a viable alternative for pre- and early-fault-tolerant quantum computers. Here, we introduce a quantum diagonalization algorithm which combines two key ideas on quantum subspaces: a classical diagonalization based on quantum samples, and subspaces constructed with quantum Krylov states. We prove that our algorithm converges in polynomial time under the working assumptions of Krylov quantum diagonalization and sparseness of the ground state. We then demonstrate the scalability of our approach by performing the largest ground-state quantum simulation of impurity models using a Heron quantum processors and the Frontier supercomputer. We consider both the single-impurity Anderson model with 41 bath sites, and a system with 4 impurities and 7 bath sites per impurity. Our results are in excellent agreement with Density Matrix Renormalization Group calculations.

quant-ph↗

arXiv2021

NewtonNet: A Newtonian message passing network for deep learning of interatomic potentials and forces

We report a new deep learning message passing network that takes inspiration from Newton's equations of motion to learn interatomic potentials and forces. With the advantage of directional information from trainable latent force vectors, and physics-infused operators that are inspired by the Newtonian physics, the entire model remains rotationally equivariant, and many-body interactions are inferred by more interpretable physical features. We test NewtonNet on the prediction of several reactive and non-reactive high quality ab initio data sets including single small molecule dynamics, a large set of chemically diverse molecules, and methane and hydrogen combustion reactions, achieving state-of-the-art test performance on energies and forces with far greater data and computational efficiency than other deep learning models.

physics.chem-ph↗