Luke Murray Kearney | Searcharxiv

arXiv2026

A Machine Learning Framework for Constructing Heterogeneous Contact Networks: Implications for Epidemic Modelling

Capturing the structured mixing within a population is key to the reliable projection of infectious disease dynamics and hence informed control. Both heterogeneity in the number of contacts and age-structured mixing have been repeatedly demonstrated as fundamental, yet are rarely combined. Networks provide a powerful and intuitive method to realise population structure, and simulate infection dynamics. However the explicit measurement of contact networks is not scalable to larger populations. Here, using data from social contact surveys, we develop a generalisable and robust algorithm utilizing machine learning to generate a surrogate population-scale network that preserves both age-structured mixing and heterogeneity of contacts. We simulate the spread of infection across different populations, considering how the epidemic size varies over basic reproduction number ($R_0$) scenarios - mirroring the process of determining public health impact from early epidemic growth. Our approach shows that both age structure and degree heterogeneity substantially reduce the epidemic size. We also demonstrate that these simulations more accurately capture the heterogeneity in secondary cases observed for COVID-19 when transmission is scaled by contact duration, dampening the effect of highly connected ``super-spreaders". By using survey data collected during 2020-2022, these network models also inform about the impacts of control and targeting of public health interventions: quantifying the non-linear reduction in transmission opportunities that occurred during lockdowns, and the ages and contact types most responsible for onward transmission. Our robust methodology therefore allows for the inclusion of the full wealth of data commonly collected by surveys but frequently overlooked to be incorporated into more realistic transmission models of infectious diseases.

cs.SI↗

arXiv2025

Data-Driven Construction of Age-Structured Contact Networks

Capturing the structure of a population and characterising contacts within the population are key to reliable projections of infectious disease. Two main elements of population structure -- contact heterogeneity and age -- have been repeatedly demonstrated to be key in infection dynamics, yet are rarely combined. Regarding individuals as nodes and contacts as edges within a network provides a powerful and intuitive method to fully realise this population structure. While there are a few key examples of contact networks being measured explicitly, in general we need to construct the appropriate networks from individual-level data. Here, using data from social contact surveys, we develop a generic and robust algorithm to generate an extrapolated network that preserves both age-structured mixing and heterogeneity in the number of contacts. We then use these networks to simulate the spread of infection through the population, constrained to have a given basic reproduction number ($R_0$) and hence a given early growth rate. Given the over-dominant role that highly connected nodes (`superspreaders') would otherwise play in early dynamics, we scale transmission by the average duration of contacts, providing a better match to surveillance data for numbers of secondary cases. This network-based model shows that, for COVID-like parameters, including both heterogeneity and age-structure reduces both peak height and epidemic size compared to models that ignore heterogeneity. Our robust methodology therefore allows for the inclusion of the full wealth of data commonly collected by surveys but frequently overlooked to be incorporated into more realistic transmission models of infectious diseases.

physics.soc-ph↗