arXiv subjects

Mário J. de Oliveira

Publications and source records attributed to Mário J. de Oliveira.

At least 37 records · Page 2Linked to original sources

arXiv2020

Stochastic approach to epidemic spreading

We analyze four models of epidemic spreading using a stochastic approach in which the primary stochastic variables are the numbers of individuals in each class. The stochastic approach is described by a master equation and the transition rate for each process such as infection or recovery are set up by using the law of mass action. We perform numerical simulations as well as numerical integration of the evolution equations for the average number of each class of individuals. The onset of the epidemic spreading is obtained by a linear analysis of the disease free state, from which follows the initial exponential increase of the infected and the frequency of new cases. The order parameter and the variance in the number of individuals are also obtained characterizing the onset of epidemic spreading as a critical phase transition.

cond-mat.stat-mech↗

arXiv2020

Stochastic thermodynamics of system with continuous space of states

We analyze the stochastic thermodynamics of systems with continuous space of states. The evolution equation, the rate of entropy production, and other results are obtained by a continuous time limit of a discrete time formulation. We point out the role of time reversal and of the dissipation part of the probability current on the production of entropy. We show that the rate of entropy production is a bilinear form in the components of the dissipation probability current with coefficients being the components of the precision matrix related to the Gaussian noise. We have also analyzed a type of noise that makes the energy function to be strictly constant along the stochastic trajectory, being appropriate to describe an isolated system. This type of noise leads to nonzero entropy production and thus to an increase of entropy in the system. This result contrasts with the invariance of the entropy predicted by the Liouville equation, which also describes an isolated system.

cond-mat.stat-mech↗

arXiv2020

Classical and quantum stochastic thermodynamics

The stochastic thermodynamics provides a framework for the description of systems that are out of thermodynamic equilibrium. It is based on the assumption that the elementary constituents are acted by random forces that generate a stochastic dynamics, which is here represented by a Fokker-Planck-Kramers equation. We emphasize the role of the irreversible probability current, the vanishing of which characterizes the thermodynamic equilibrium and yields a special relation between fluctuation and dissipation. The connection to thermodynamics is obtained by the definition of the energy function and the entropy as well as the rate at which entropy is generated. The extension to quantum systems is provided by a quantum evolution equation which is a canonical quantization of the Fokker-Planck-Kramers equation. An example of an irreversible systems is presented which shows a nonequilibrium stationary state with an unceasing production of entropy. A relationship between the fluxes and the path integral is also presented.

cond-mat.stat-mech↗

arXiv2020

Positive heat capacity in the microcanonical ensemble

The positivity of the heat capacity is the hallmark of thermal stability of systems in thermodynamic equilibrium. We show that this property remains valid for systems with negative derivative of energy with respect to temperature, as happens to some system described by the microcanonical ensemble. The demonstration rests on considering a trajectory on the Gibbs equilibrium surface, and its projection on the entropy-energy plane. The Gibbs equilibrium surface has the convexity property, but the projection might lack this property, leading to a negative derivative of energy with respect to temperature.

cond-mat.stat-mech↗

arXiv2019

Quantum Langevin equation

We propose a Langevin equation to describe the quantum Brownian motion of bounded particles based on a distinctive formulation concerning both the fluctuation and dissipation forces. The fluctuation force is similar to that employed in the classical case. It is a white noise with a variance proportional to the temperature. The dissipation force is not restrict to be proportional to the velocity and is determined in a way as to guarantee that the stationary state is given by a density operator of the Gibbs canonical type. To this end we derived an equation that gives the time evolution of the density operator, which turns out to be a quantum Fokker-Planck-Kramers equation. The approach is applied to the harmonic oscillator in which case the dissipation force is found to be non Hermitian and proportional to the velocity and position.

cond-mat.stat-mech↗

arXiv2019

Complex heat capacity and entropy production of temperature modulated systems

Non-equilibrium systems under temperature modulation are investigated in the light of the stochastic thermodynamics. We show that, for small amplitudes of the temperature oscillations, the heat flux behaves sinusoidally with time, a result that allows the definition of the complex heat capacity. The real part of the complex heat capacity is the dynamic heat capacity, and its imaginary part is shown to be proportional to the rate of entropy production. We also show that the poles of the complex heat capacity are equal to imaginary unit multiplied by the eigenvalues of the unperturbed evolution operator, and are all located in the lower half plane of the complex frequency, assuring that the Kramers-Kronig relations are obeyed. We have also carried out an exact calculation of the complex heat capacity of a harmonic solid and determined the dispersion relation of the dynamic heat capacity and of the rate of entropy production.

cond-mat.stat-mech↗

arXiv2019

Boltzmann stochastic thermodynamics

The Boltzmann kinetic equation is obtained from an integro-differential master equation that describes a stochastic dynamics in phase space of an isolated thermodynamic system. The stochastic evolution yields a generation of entropy, leading to an increase of Gibbs entropy, in contrast to a Hamiltonian dynamics, described by the Liouville equation, for which the entropy is constant in time. By considering transition rates corresponding to collisions of two particles, the Boltzmann equation is attained. When the angle of the scattering produced by collisions is small, the master equation is shown to be reduced to a differential equation of the Fokker-Planck type. When the dynamics is of the Hamiltonian type, the master equation reduces to the Liouville equation. The present approach is understood as a stochastic interpretation of the reasonings employed by Maxwell and Boltzmann in the kinetic theory of gases regarding the microscopic time evolution.

cond-mat.stat-mech↗

arXiv2019

Entropy production and heat capacity of systems under time-dependent oscillating temperature

Using the stochastic thermodynamics, we determine the entropy production and the dynamic heat capacity of systems subject to a sinusoidally time dependent temperature, in which case the systems are permanently out of thermodynamic equilibrium inducing a continuous generation of entropy. The systems evolve in time according to a Fokker-Planck or to a Fokker-Planck-Kramers equation. Solutions of these equations, for the case of harmonic forces, are found exactly from which the heat flux, the production of entropy and the dynamic heat capacity are obtained as functions of the frequency of the temperature modulation. These last two quantities are shown to be related to the real an imaginary parts of the complex heat capacity.

cond-mat.stat-mech↗

arXiv2018

Stochastic thermodynamics and entropy production of chemical reaction systems

We investigate the nonequilibrium stationary states of systems consisting of chemical reactions among molecules of several chemical species. To this end we introduce and develop a stochastic formulation of nonequilibrium thermodynamics of chemical reaction systems based on a master equation defined on the space of microscopic chemical states, and on appropriate definitions of entropy and entropy production, The system is in contact with a heat reservoir, and is placed out of equilibrium by the contact with particle reservoirs. In our approach, the fluxes of various types, such as the heat and particle fluxes, play a fundamental role in characterizing the nonequilibrium chemical state. We show that the rate of entropy production in the stationary nonequilibrium state is a bilinear form in the affinities and the fluxes of reaction, which are expressed in terms of rate constants and transition rates, respectively. We also show how the description in terms of microscopic states can be reduced to a description in terms of the numbers of particles of each species, from which follows the chemical master equation. As an example, we calculate the rate of entropy production of the first and second Schlögl reaction models.

cond-mat.stat-mech↗

arXiv2017

Critical properties of the contact process with quenched dilution

We have studied the critical properties of the contact process on a square lattice with quenched site dilution by Monte Carlo simulations. This was achieved by generating in advance the percolating cluster, through the use of an appropriate epidemic model, and then by the simulation of the contact process on the top of the percolating cluster. The dynamic critical exponents were calculated by assuming an activated scaling relation and the static exponents by the usual power law behavior. Our results are in agreement with the prediction that the quenched diluted contact process belongs to the universality class of the random transverse-field Ising model. We have also analyzed the model and determined the phase diagram by the use of a mean-field theory that takes into account the correlation between neighboring sites.

cond-mat.dis-nn↗

arXiv2017

Thermal conductance of a two-level atom coupled to two quantum harmonic oscillators

We have determined the thermal conductance of a system consisting of a two-level atom coupled to two quantum harmonic oscillators in contact with heat reservoirs at distinct temperatures. The calculation of the heat flux as well as the atomic population and the rate of entropy production are obtained by the use of a quantum Fokker-Planck-Kramers equation and by a Lindblad master equation. The calculations are performed for small values of the coupling constant. The results coming from both approaches show that the conductance is proportional to the coupling constant squared and that, at high temperatures, it is proportional to the inverse of temperature.

cond-mat.stat-mech↗

arXiv2015

Thermal rectification in anharmonic chains under an energy-conserving noise

Systems in which the heat flux depends on the direction of the flow are said to present thermal rectification. This effect has attracted much theoretical and experimental interest in recent years. However, in most theoretical models the effect is found to vanish in the thermodynamic limit, in disagreement with experiment. The purpose of this paper is to show that the rectification may be restored by including an energy-conserving noise which randomly flips the velocity of the particles with a certain rate $λ$. It is shown that as long as $λ$ is non-zero, the rectification remains finite in the thermodynamic limit. This is illustrated in a classical harmonic chain subject to a quartic pinning potential (the $Φ^4$ model) and coupled to heat baths by Langevin equations.

cond-mat.stat-mech↗

arXiv2015

Type-dependent irreversible stochastic spin models for genetic regulatory networks at the level of promotion-inhibition circuitry

We describe an approach to model genetic regulatory networks at the level of promotion-inhibition circuitry through a class of stochastic spin models that includes spatial and temporal density fluctuations in a natural way. The formalism can be viewed as an agent-based model formalism with agent behavior ruled by a classical spin-like pseudo-Hamiltonian playing the role of a local, individual objective function. A particular but otherwise generally applicable choice for the microscopic transition rates of the models also makes them of independent interest. To illustrate the formalism, we investigate (by Monte Carlo simulations) some stationary state properties of the repressilator, a synthetic three-gene network of transcriptional regulators that possesses oscillatory behavior.

cond-mat.stat-mech↗

arXiv2015

Stochastic approach to equilibrium and nonequilibrium thermodynamics

We develop the stochastic approach to thermodynamics based on the stochastic dynamics, which can be discrete (master equation) continuous (Fokker-Planck equation), and on two assumptions concerning entropy. The first is the definition of entropy itself and the second, the definition of entropy production rate which is nonnegative and vanishes in thermodynamic equilibrium. Based on these assumptions we study interacting systems with many degrees of freedom in equilibrium or out of thermodynamic equilibrium, and how the macroscopic laws are derived from the stochastic dynamics. These studies include the quasi-equilibrium processes, the convexity of the equilibrium surface, the monotonic time behavior of thermodynamic potentials, including entropy, the bilinear form of the entropy production rate, the Onsager coefficients and reciprocal relations, and the nonequilibrium steady states of chemical reactions.

cond-mat.stat-mech↗

arXiv2015

Critical properties of the susceptible-exposed-infected model on a square lattice

The critical properties of the stochastic susceptible-exposed-infected model on a square lattice is studied by numerical simulations and by the use of scaling relations. In the presence of an infected individual, a susceptible becomes either infected or exposed. Once infected or exposed, the individual remains forever in this state. The stationary properties are shown to be the same as those of isotropic percolation so that the critical behavior puts the model into the universality class of dynamic percolation.

cond-mat.stat-mech↗

arXiv2013

Robustness of first-order phase transitions in one-dimensional long-range contact processes

It has been proposed (Phys. Rev. E {\bf 71}, 026121 (2005)) that unlike the short range contact process, a long-range counterpart may lead to the existence a discontinuous phase transition in one dimension. Aiming at exploring such link, here we investigate thoroughly a family of long-range contact processes. They are introduced through the transition rate $1+a\ell^{-σ}$, where $\ell$ is the length of inactive islands surrounding particles. In the former approach we reconsider the original model (called $σ-$contact process), by considering distinct mechanisms of weakening the long-range interaction toward the short-range limit. Second, we study the effect of different rules, including creation and annihilation by clusters of particles and distinct versions with infinitely many absorbing states. Our results show that all examples presenting a single absorbing state, a discontinuous transition is possible for small $σ$. On the other hand, the presence of infinite absorbing states leads to distinct scenario depending on the interactions at the frontier of inactive sites.

cond-mat.stat-mech↗

arXiv2012

Stochastic dynamics of dengue epidemics

We use a stochastic Markovian dynamics approach to describe the spreading of vector-transmitted diseases, like dengue, and the threshold of the disease. The coexistence space is composed by two structures representing the human and mosquito populations. The human population follows a susceptible-infected-recovered (SIR) type dynamics and the mosquito population follows a susceptible-infected-susceptible (SIS) type dynamics. The human infection is caused by infected mosquitoes and vice-versa so that the SIS and SIR dynamics are interconnected. We develop a truncation scheme to solve the evolution equations from which we get the threshold of the disease and the reproductive ratio. The threshold of the disease is also obtained by performing numerical simulations. We found that for certain values of the infection rates the spreading of the disease is impossible whatever is the death rate of infected mosquito.

q-bio.PE↗

arXiv2011

Stationary Coverage of a Stochastic Adsorption-Desorption Process with Diffusional Relaxation

We show that it is possible to derive the stationary coverage of an adsorption-desorption process of dimers with diffusional relaxation with a very simple ansatz for the stationary distribution of the process supplemented by a hypothesis of global balance. Our approach is contrasted to the exact result and we seek to understand its validity within an instance of the model.

cond-mat.stat-mech↗