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M. Carretero

Publications and source records attributed to M. Carretero.

16 recordsLinked to original sources

Early stages of collective cell invasion: Biomechanics

The early stages of the collective invasion may occur by single mesenchymal cells or hybrid epithelial-mesenchymal cell groups that detach from cancerous tissue. Tumors may also emit invading protrusions of epithelial cells, which could be led (or not) by a basal cell. Here we devise a novel fractional step cellular Potts model comprising passive and active cells able to describe these different types of collective invasion before cells start proliferating. Cells moving toward stiffness gradients (durotaxis) and active forces pulling them away from the tumor have different symmetry properties under cellular extension and retraction that sometimes hamper collective invasion when put together. Thus, these forces are included in different half steps of the fractional step method. Compared with a single step method, fractional step produces more realistic collective invasion scenarios with little extra computational effort. Biochemical mechanisms that determine how cells acquire their different phenotypes and cellular proliferation will be incorporated to the model in future publications.

cond-mat.stat-mech

Soliton approximation in continuum models of leader-follower behavior

Complex biological processes involve collective behavior of entities (bacteria, cells, animals) over many length and time scales and can be described by discrete models that track individuals or by continuum models involving densities and fields. We consider hybrid stochastic agent-based models of branching morphogenesis and angiogenesis (new blood vessel creation from pre-existing vasculature), which treat cells as individuals that are guided by underlying continuous chemical and/or mechanical fields. In these descriptions, leader (tip) cells emerge from existing branches and follower (stalk) cells build the new sprout in their wake. Vessel branching and fusion (anastomosis) occur as a result of tip and stalk cell dynamics. Coarse-graining these hybrid models in appropriate limits produces continuum partial differential equations (PDEs) for endothelial cell densities that are more analytically tractable. While these models differ in nonlinearity, they produce similar equations at leading order when chemotaxis is dominant. We analyze this leading order system in a simple quasi-one-dimensional geometry and show that the numerical solution of the leading order PDE is well described by a soliton wave that evolves from vessel to source. This wave is an attractor for intermediate times until it arrives at the hypoxic region releasing the growth factor. The mathematical techniques used here thus identify common features of discrete and continuum approaches and provide insight into general biological mechanisms governing their collective dynamics.

cond-mat.soft

Designing hyperchaos and intermittency in semiconductor superlattices

Weakly coupled semiconductor superlattices under dc voltage bias are excitable systems with many degrees of freedom that may exhibit spontaneous chaos at room temperature and act as fast physical random number generator devices. Superlattices with identical periods exhibit current self-oscillations due to the dynamics of charge dipole waves but chaotic oscillations exist on narrow voltage intervals. They disappear easily due to variation in structural growth parameters. Based on numerical simulations, we predict that inserting two identical sufficiently separated wider wells increases superlattice excitability by allowing wave nucleation at the modified wells and more complex dynamics. This system exhibits hyperchaos and varieties of intermittent chaos in extended dc voltage ranges. Unlike in ideal superlattices, our chaotic attractors are robust and resilient against noises and against controlled random disorder due to growth fluctuations.

cond-mat.mes-hall

Integrodifference master equation describing actively growing blood vessels in angiogenesis

We study a system of particles in a two-dimensional geometry that move according to a reinforced random walk with transition probabilities dependent on the solutions of reaction-diffusion equations for the underlying fields. A birth process and a history-dependent killing process are also considered. This system models tumor-induced angiogenesis, the process of formation of blood vessels induced by a growth factor released by a tumor. Particles represent vessel tip cells, whose trajectories constitute the growing vessel network. New vessels appear and may fuse with existing ones during their evolution. Thus, the system is described by tracking the density of active tips, calculated as an ensemble average over many realizations of the stochastic process. Such density satisfies a novel discrete master equation with source and sink terms. The sink term is proportional to a space-dependent and suitably fitted killing coefficient. Results are illustrated studying two influential angiogenesis models.

q-bio.TO

Two dimensional soliton in tumor induced angiogenesis

Ensemble averages of a stochastic model show that, after a formation stage, the tips of active blood vessels in an angiogenic network form a moving two dimensional stable diffusive soliton, which advances toward sources of growth factor. Here we use methods of multiple scales to find the diffusive soliton as a solution of a deterministic equation for the mean density of active endothelial cells tips. We characterize the diffusive soliton shape in a general geometry, and find that its vector velocity and the trajectory of its center of mass along curvilinear coordinates solve appropriate collective coordinate equations. The vessel tip density predicted by the soliton compares well with that obtained by ensemble averages of simulations of the stochastic model.

cond-mat.stat-mech

Two dimensional collective electron magnetotransport, oscillations and chaos in a semiconductor superlattice

When quantized, traces of classically chaotic single particle systems include eigenvalue statistics and scars in eigenfuntions. Since 2001, many theoretical and experimental works have argued that classically chaotic single electron dynamics influences and controls collective electron transport. For transport in semiconductor superlattices under tilted magnetic and electric fields, these theories rely on a reduction to a one-dimensional self-consistent drift model. A two-dimensional theory based on self-consistent Boltzmann transport does not support that single electron chaos influences collective transport. This theory agrees with existing experimental evidence of current self-oscillations, predicts spontaneous collective chaos via a period doubling scenario and it could be tested unambiguously by measuring the electric potential inside the superlattice under a tilted magnetic field.

cond-mat.mes-hall

Soliton-like attractor for blood vessel tip density in angiogenesis

Recently, numerical simulations of a stochastic model have shown that the density of vessel tips in tumor induced angiogenesis adopts a soliton-like profile [Sci. Rep. 6, 31296 (2016)]. In this work, we derive and solve the equations for the soliton collective coordinates that indicate how the soliton adapts its shape and velocity to varying chemotaxis and diffusion. The vessel tip density can be reconstructed from the soliton formulas. While the stochastic model exhibits large fluctuations, we show that the location of the maximum vessel tip density for different replicas follows closely the soliton peak position calculated either by ensemble averages or by solving an alternative deterministic description of the density. The simple soliton collective coordinate equations may also be used to ascertain the response of the vessel network to changes in the parameters and thus to control it.

physics.bio-ph

Stochastic Model of Tumor-induced Angiogenesis: Ensemble Averages and Deterministic Equations

A recent conceptual model of tumor-driven angiogenesis including branching, elongation, and anastomosis of blood vessels captures some of the intrinsic multiscale structures of this complex system, yet allowing to extract a deterministic integro-partial differential description of the vessel tip density [Phys. Rev. E 90, 062716 (2014)]. Here we solve the stochastic model, show that ensemble averages over many realizations correspond to the deterministic equations, and fit the anastomosis rate coefficient so that the total number of vessel tips evolves similarly in the deterministic and ensemble averaged stochastic descriptions.

q-bio.TO

Hybrid modeling of tumor-induced angiogenesis

When modeling of tumor-driven angiogenesis, a major source of analytical and computational complexity is the strong coupling between the kinetic parameters of the relevant stochastic branching-and-growth of the capillary network, and the family of interacting underlying fields. To reduce this complexity, we take advantage of the system intrinsic multiscale structure: we describe the stochastic dynamics of the cells at the vessel tip at their natural mesoscale, whereas we describe the deterministic dynamics of the underlying fields at a larger macroscale. Here, we set up a conceptual stochastic model including branching, elongation, and anastomosis of vessels and derive a mean field approximation for their densities. This leads to a deterministic integro-partial differential system that describes the formation of the stochastic vessel network. We discuss the proper capillary injecting boundary conditions and include the results of relevant numerical simulations.

q-bio.TO

Dynamics of optically injected currents in carbon nanotubes

We consider theoretically the dynamics of electric currents optically injected in carbon nanotubes. Although the plasma oscillations are not seen in these systems, the main effect on the carrier's motion is due to strongly nonuniform space-charge Coulomb forces produced by time-dependent separation of injected electron and hole densities. We calculate evolution of the dipole moment characterizing the time- and coordinate-dependent charge density distributions and analyze different regimes of the dynamics. The developed time-dependent dipole moment leads to a dipole radiation in the THz frequency range for typical parameters of injected currents.

cond-mat.mes-hall

Noise enhanced spontaneous chaos in semiconductor superlattices at room temperature

Physical systems exhibiting fast spontaneous chaotic oscillations are used to generate high-quality true random sequences in random number generators. The concept of using fast practical entropy sources to produce true random sequences is crucial to make storage and transfer of data more secure at very high speeds. While the first high-speed devices were chaotic semiconductor lasers, the discovery of spontaneous chaos in semiconductor superlattices at room temperature provides a valuable nanotechnology alternative. Spontaneous chaos was observed in 1996 experiments at temperatures below liquid nitrogen. Here we show spontaneous chaos at room temperature appears in idealized superlattices for voltage ranges where sharp transitions between different oscillation modes occur. Internal and external noises broaden these voltage ranges and enhance the sensitivity to initial conditions in the superlattice snail-shaped chaotic attractor thereby rendering spontaneous chaos more robust.

cond-mat.mes-hall

Numerical method for hydrodynamic modulation equations describing Bloch oscillations in semiconductor superlattices

We present a finite difference method to solve a new type of nonlocal hydrodynamic equations that arise in the theory of spatially inhomogeneous Bloch oscillations in semiconductor superlattices. The hydrodynamic equations describe the evolution of the electron density, electric field and the complex amplitude of the Bloch oscillations for the electron current density and the mean energy density. These equations contain averages over the Bloch phase which are integrals of the unknown electric field and are derived by singular perturbation methods. Among the solutions of the hydrodynamic equations, at a 70 K lattice temperature, there are spatially inhomogeneous Bloch oscillations coexisting with moving electric field domains and Gunn-type oscillations of the current. At higher temperature (300 K) only Bloch oscillations remain. These novel solutions are found for restitution coefficients in a narrow interval below their critical values and disappear for larger values. We use an efficient numerical method based on an implicit second-order finite difference scheme for both the electric field equation (of drift-diffusion type) and the parabolic equation for the complex amplitude. Double integrals appearing in the nonlocal hydrodynamic equations are calculated by means of expansions in modified Bessel functions. We use numerical simulations to ascertain the convergence of the method. If the complex amplitude equation is solved using a first order scheme for restitution coefficients near their critical values, a spurious convection arises that annihilates the complex amplitude in the part of the superlattice that is closer to the cathode. This numerical artifact disappears if the space step is appropriately reduced or we use the second-order numerical scheme.

cond-mat.mes-hall

Theory of spatially inhomogneous Bloch oscillations in semiconductor superlattices

In a semiconductor superlattice with long scattering times, damping of Bloch oscillations due to scattering is so small that nonlinearities may compensate it and Bloch oscillations persist even in the hydrodynamic regime. To demonstrate this, a Boltzmann-Poisson transport model of miniband superlattices with inelastic collisions is proposed and hydrodynamic equations for electron density, electric field and the complex amplitude of the Bloch oscillations are derived by singular perturbation methods. For appropriate parameter ranges, numerical solutions of these equations show stable Bloch oscillations with spatially inhomogeneous field, charge, current density and energy density profiles. These Bloch oscillations disappear as scattering times become sufficiently short. For sufficiently low lattice temperatures, Bloch and Gunn type oscillations mediated by electric field, current and energy domains coexist for a range of voltages. For larger lattice temperatures (300 K), there are only Bloch oscillations with stationary amplitude and electric field profiles.

cond-mat.mes-hall

Spatially confined Bloch oscillations in semiconductor superlattices

In a semiconductor superlattice with long scattering times, damping of Bloch oscillations due to scattering is so small that convective nonlinearities may compensate it and Bloch oscillations persist even in the hydrodynamic regime. In this case, numerical solutions show that there are stable Bloch oscillations confined to a region near the collector with inhomogeneous field, charge, current density and energy density profiles. These Bloch oscillations disappear when damping due to inelastic collisions becomes sufficiently strong.

cond-mat.mes-hall

Magnetoswitching of current oscillations in diluted magnetic semiconductor nanostructures

Strongly nonlinear transport through Diluted Magnetic Semiconductor multiquantum wells occurs due to the interplay between confinement, Coulomb and exchange interaction. Nonlinear effects include the appearance of spin polarized stationary states and self-sustained current oscillations as possible stable states of the nanostructure, depending on its configuration and control parameters such as voltage bias and level splitting due to an external magnetic field. Oscillatory regions grow in size with well number and level splitting. A systematic analysis of the charge and spin response to voltage and magnetic field switching of II-VI Diluted Magnetic Semiconductor multiquantum wells is carried out. The description of stationary and time-periodic spin polarized states, the transitions between them and the responses to voltage or magnetic field switching have great importance due to the potential implementation of spintronic devices based on these nanostructures.

cond-mat.mes-hall

Multiquantum well spin oscillator

A dc voltage biased II-VI semiconductor multiquantum well structure attached to normal contacts exhibits self-sustained spin-polarized current oscillations if one or more of its wells are doped with Mn. Without magnetic impurities, the only configurations appearing in these structures are stationary. Analysis and numerical solution of a nonlinear spin transport model yield the minimal number of wells (four) and the ranges of doping density and spin splitting needed to find oscillations.

cond-mat.mes-hall