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M. Castelnovo

Publications and source records attributed to M. Castelnovo.

3 recordsLinked to original sources

Measuring the force ejecting DNA from phage

We discuss how a balance can be established between the force acting to eject DNA from viral capsids and the force resisting its entry into a colloidal suspension which mimics the host cell cytoplasm. The ejection force arises from the energy stored in the capsid as a consequence of the viral genome (double-stranded DNA) being strongly bent and crowded on itself. The resisting force is associated with the osmotic pressure exerted by the colloidal particles in the host solution. Indeed, recent experimental work has demonstrated that the extent of ejection can be progressively limited by increasing the external osmotic pressure; at a sufficiently high pressure the ejection is completely suppressed. We outline here a theoritical analysis that allows a determination of the internal (capsid) pressure by examining the different relations between force and pressure inside and outside the capsid, using the experimentally measured position of the force balance.

physics.bio-ph

Semi-flexible chain condensation by neutral depleting agents: role of correlations between depletants

We revisit the problem of semi-flexible chain condensation by neutral depleting agents (e.g. colloidal spheres or flexible polymers) by using a simple formalism that allows us to address its main features without specifying the kind of depleting agents. Correlations between depleting agents are shown to produce a reswelling of the chain at high enough volume fraction, consistent with an earlier analysis by Grosberg et al. (Biopolymers, 21:2413, 1982) in the context of DNA condensation induced by neutral polymers. It is also shown that the conditions under which spherical colloids can condense a semi-flexible chain are strongly restrictive, unlike what has been recently claimed. The formalism allows us to compare the efficiency of colloids vs polymers as condensing agents.

cond-mat.soft

Osmotic force resisting chain insertion in a colloidal suspension

We consider the problem of inserting a stiff chain into a colloidal suspension of particles that interact with it through excluded volume forces. The free energy of insertion is associated with the work of creating a cavity devoid of colloid and sufficiently large to accomodate the chain. The corresponding work per unit length is the force that resists the entry of the chain into the colloidal suspension. In the case of a hard sphere fluid, this work can be calculated straightforwardly within the scaled particle theory; for solutions of flexible polymers, on the other hand, we employ simple scaling arguments. The forces computed in these ways are shown, for nanometer chain and colloid diameters, to be of the order of tens of pN for solution volume fraction for biophysical processes such as the ejection of DNA from viral capsids into the cell cytoplasm.

cond-mat.soft