M. Huix-Rotllant | Searcharxiv

arXiv2018

Ultrafast carbon monoxide photolysis and heme spin-crossover in myoglobin via nonadiabatic quantum dynamics

Light absorption of myoglobin triggers diatomic ligand photolysis and spin crossover transition of iron(II) that initiate protein conformational change. The photolysis and spin crossover reactions happen concurrently on a femtosecond timescale. The microscopic origin of these reactions remains controversial. Here, we apply quantum wavepacket dynamics to elucidate the ultrafast photochemical mechanism for a heme--carbon monoxide (heme--CO) complex. We observe coherent oscillations of the Fe-CO bond distance with a period of 42 fs and an amplitude of $\sim$1 Å. These nuclear motions induce pronounced geometric reorganization, which makes the CO dissociation irreversible. The reaction is initially dominated by symmetry breaking vibrations inducing an electron transfer from porphyrin to iron. Subsequently, the wavepacket relaxes to the triplet manifold in $\sim$75 fs and to the quintet manifold in $\sim$430 fs. Our results highlight the central role of nuclear vibrations at the origin of the ultrafast photodynamics of organometallic complexes.

physics.chem-ph↗

arXiv2011

Progress in Time-Dependent Density-Functional Theory

The classic density-functional theory (DFT) formalism introduced by Hohenberg, Kohn, and Sham in the mid-1960s, is based upon the idea that the complicated N-electron wavefunction can be replaced with the mathematically simpler 1-electron charge density in electronic struc- ture calculations of the ground stationary state. As such, ordinary DFT is neither able to treat time-dependent (TD) problems nor describe excited electronic states. In 1984, Runge and Gross proved a theorem making TD-DFT formally exact. Information about electronic excited states may be obtained from this theory through the linear response (LR) theory formalism. Begin- ning in the mid-1990s, LR-TD-DFT became increasingly popular for calculating absorption and other spectra of medium- and large-sized molecules. Its ease of use and relatively good accuracy has now brought LR-TD-DFT to the forefront for this type of application. As the number and the diversity of applications of TD-DFT has grown, so too has grown our understanding of the strengths and weaknesses of the approximate functionals commonly used for TD-DFT. The objective of this article is to continue where a previous review of TD-DFT in this series [Annu. Rev. Phys. Chem. 55: 427 (2004)] left off and highlight some of the problems and solutions from the point of view of applied physical chemistry. Since doubly-excited states have a particularly important role to play in bond dissociation and formation in both thermal and photochemistry, particular emphasis will be placed upon the problem of going beyond or around the TD-DFT adiabatic approximation which limits TD-DFT calculations to nominally singly-excited states. Posted with permission from the Annual Review of Physical Chemistry, Volume 63 \c{opyright} 2012 by Annual Reviews, http://www.annualreviews.org.

physics.chem-ph↗