arXiv subjects

M. M. Telo da Gama

Publications and source records attributed to M. M. Telo da Gama.

At least 19 recordsLinked to original sources

arXiv2023

Structural criterion for the onset of rigidity in a colloidal gel

Identifying the necessary conditions for the onset of rigidity in a gel remains a challenge. It has been suggested that local particle coordination could be used to establish such conditions, but rigid gels occur for various coordination numbers. Combining simulations, oscillatory rheology, and a percolation analysis, for particles where the valence can be controlled, we find that the onset of rigidity coincides with the percolation of particles with three or more bonds, which arises after the connectivity percolation. We show that the rigidity results from an interplay of bonding and non-bonding interactions, providing insight into low-valence colloidal gel rigidity.

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arXiv2022

Minimal model for active particles confined in a two-state micropattern

We propose a minimal model, based on active Brownian particles, for the dynamics of cells confined in a two-state micropattern, composed of two rectangular boxes connected by a bridge, and investigate the transition statistics. A transition between boxes occurs when the active particle crosses the center of the bridge, and the time between subsequent transitions is the dwell time. By assuming that the rotational diffusion time $τ$ is a function of the position, the main features of the transition statistics observed experimentally are recovered. $τ$ controls the transition from a ballistic regime at short time scales to a diffusive regime at long time scales, with an effective diffusion coefficient proportional to $τ$. For small values of $τ$, the dwell time is determined by the characteristic diffusion timescale which decays with $τ$. For large values of $τ$, the interaction with the walls dominates and the particle stays mostly at the corners of the boxes increasing the dwell time. We find that there is an optimal $τ$ for which the dwell time is minimal and its value can be tuned by changing the geometry of the pattern.

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arXiv2021

Dynamical demixing of a binary mixture under sedimentation

We investigate the sedimentation dynamics of a binary mixture, the species of which differ by their Stokes coefficients but are identical otherwise. We analyze the sedimentation dynamics and the morphology of the final deposits using Brownian dynamics simulations for mixtures with a range of sedimentation velocities of both species. In addition, we use the lattice Boltzmann method to study hydrodynamic effects. We found a threshold in the difference of the sedimentation velocities above which the species in the final deposit are segregated. The degree of segregation increases with the difference in the Stokes coefficients or the sedimentation velocities above the threshold. We propose a simple analytical model that captures the main features of the simulated deposits.

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arXiv2021

Hierarchical structure of the energy landscape in the Voronoi model of dense tissue

The Voronoi model is a popular tool for studying confluent living tissues. It exhibits an anomalous glassy behavior even at very low temperatures or weak active self-propulsion, and at zero temperature the model exhibits a disordered solid structure with no evidence of a rigidity transition. Here we investigate the properties of the energy landscape in this limit. We find two disordered solid phases that have similar structural features but that differ in the ultrametricity of their energy landscapes; the crossover between these two states shares phenomenological properties with a Gardner transition. We further highlight how the metric used to calculate distances between configurations influences the ability to detect hierarchical arrangements of basins in the energy landscape.

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arXiv2020

Smoluchowski equations for linker-mediated irreversible aggregation

In order to study linker-mediated aggregation of colloidal particles with limited valence, we combine kinetic Monte Carlo simulations and an approximate theory based on the Smoluchowski equations. We found that aggregation depends strongly on two parameters, the ratio of the number of linkers and particles and the ratio of their diffusion coefficients. These control parameters are absent in single-species aggregation and provide a much greater variety and control of the resulting structures. We show that aggregation is non-trivial when two time scales of aggregation are present. Our aggregation dynamics theory is in qualitative and quantitative agreement with kinetic Monte Carlo simulations. Our results show how the optimal aggregation may be tuned through the ratio of the linkers and particles and that of the diffusion coefficients.

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arXiv2020

How to design cell-mediated self-assembled colloidal scaffolds

A critical step in tissue engineering is the design and synthesis of 3D biocompatible matrices (scaffolds) to support and guide the proliferation of cells and tissue growth. Most existing techniques rely on the processing of scaffolds under controlled conditions and then implanting them \textit{in vivo}, with questions related to biocompatibility and the implantation process that are still challenging. As an alternative, it was proposed to assemble the scaffolds \textit{in loco} through the self-organization of colloidal particles mediated by cells. In this study, we combine experiments, particle-based simulations, and mean-field calculations to show that, in general, the size of the self-assembled scaffold scales with the cell-to-particle ratio. However, we found an optimal value of this ratio, for which the size of the scaffold is maximal when cell-cell adhesion is suppressed. These results suggest that the size and structure of the self-assembled scaffolds may be designed by tuning the adhesion between cells in the colloidal suspension.

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arXiv2019

Optimal number of linkers per monomer in linker-mediated aggregation

We study the dynamics of diffusion-limited irreversible aggregation of monomers, where bonds are mediated by linkers. We combine kinetic Monte Carlo simulations of a lattice model with a mean-field theory to study the dynamics when the diffusion of aggregates is negligible and only monomers diffuse. We find two values of the number of linkers per monomer which maximize the size of the largest aggregate. We explain the existence of the two maxima based on the distribution of linkers per monomer. This observation is well described by a simple mean-field model. We also show that a relevant parameter is the ratio of the diffusion coefficients of monomers and linkers. In particular, when this ratio is close to ten, the two maxima merge at a single maximum.

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arXiv2018

Crossover from three- to six-fold symmetry of colloidal aggregates in circular traps

At sufficiently low temperatures and high densities, repulsive spherical particles in two-dimensions (2d) form close-packed structures with six-fold symmetry. By contrast, when the interparticle interaction has an attractive anisotropic component, the structure may exhibit the symmetry of the interaction. We consider a suspension of spherical particles interacting through an isotropic repulsive potential and a three-fold symmetric attractive interaction, confined in circular potential traps in 2d. We find that, due to the competition between the interparticle and the external potentials, the particles self-organize into structures with three- or six-fold symmetry, depending on the width of the traps. For intermediate trap widths, a core-shell structure is formed, where the core has six-fold symmetry and the shell is three-fold symmetric. When the width of the trap changes periodically in time, the symmetry of the colloidal structure also changes, but it does not necessarily follow that of the corresponding static trap.

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arXiv2018

Dynamics of a network fluid within the liquid-gas coexistence region

Low-density networks of molecules or colloids are formed at low temperatures when the interparticle interactions are valence limited. Prototypical examples are networks of patchy particles, where the limited valence results from highly directional pairwise interactions. We combine extensive Langevin simulations and Wertheim's theory of association to study these networks. We find a scale-free (relaxation) dynamics within the liquid-gas coexistence region, which differs from that usually observed for isotropic particles. While for isotropic particles the relaxation dynamics is driven by surface tension (coarsening), when the valence is limited, the slow relaxation proceeds through the formation of an intermediate non-equilibrium gel via a geometrical percolation transition in the Random Percolation universality class.

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arXiv2017

Dynamics of patchy particles in and out of equilibrium

We combine particle-based simulations, mean-field rate equations, and Wertheim's theory to study the dynamics of patchy particles in and out of equilibrium, at different temperatures and densities. We consider an initial random distribution of non-overlapping three-patch particles, with no bonds, and analyze the time evolution of the breaking and bonding rates of a single bond. We find that the asymptotic (equilibrium) dynamics differs from the initial (out of equilibrium) one. These differences are expected to depend on the initial conditions, temperature, and density.

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arXiv2017

Dynamical design of spatial patterns of colloidal suspensions

We study the collective dynamics of colloidal suspensions in the presence of a time-dependent potential, by means of dynamical density functional theory. We consider a non-linear diffusion equation for the density and show that spatial patterns emerge from a sinusoidal external potential with a time-dependent wavelength. These patterns are characterized by a sinusoidal density with the average wavelength and a Bessel-function envelope with an induced wavelength that depends only on the amplitude of the temporal oscillations. As a generalization of this result, we propose a design strategy to obtain a family of spatial patterns using time-dependent potentials of practically arbitrary shape.

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arXiv2017

Dynamics of Network Fluids

Network fluids are structured fluids consisting of chains and branches. They are characterized by unusual physical properties, such as, exotic bulk phase diagrams, interfacial roughening and wetting transitions, and equilibrium and nonequilibrium gels. Here, we provide an overview of a selection of their equilibrium and dynamical properties. Recent research efforts towards bridging equilibrium and non-equilibrium studies are discussed, as well as several open questions.

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arXiv2016

Nonequilibrium self-organization of colloidal particles on substrates: adsorption, relaxation, and annealing

Colloidal particles are considered ideal building blocks to produce materials with enhanced physical properties. The state-of-the-art techniques for synthesizing these particles provide control over shape, size, and directionality of the interactions. In spite of these advances, there is still a huge gap between the synthesis of individual components and the management of their spontaneous organization towards the desired structures. The main challenge is the control over the dynamics of self-organization. In their kinetic route towards thermodynamically stable structures, colloidal particles self-organize into intermediate (mesoscopic) structures that are much larger than the individual particles and become the relevant units for the dynamics. To follow the dynamics and identify kinetically trapped structures, one needs to develop new theoretical and numerical tools. Here we discuss the self-organization of functionalized colloids (also known as patchy colloids) on attractive substrates. We review our recent results on the adsorption and relaxation and explore the use of annealing cycles to overcome kinetic barriers and drive the relaxation towards the targeted structures.

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arXiv2015

Relaxation dynamics of functionalized colloids on attractive substrates

Particle-based simulations are performed to study the post-relaxation dynamics of functionalized (patchy) colloids adsorbed on an attractive substrate. Kinetically arrested structures that depend on the number of adsorbed particles and the strength of the particle-particle and particle-substrate interactions are identified. The radial distribution function is characterized by a sequence of peaks, with relative intensities that depend on the number of adsorbed particles. The first-layer coverage is a non-monotonic function of the number of particles, with an optimal value around one layer of adsorbed particles. The initial relaxation towards these structures is characterized by a fast (exponential) and a slow (power-law) dynamics. The fast relaxation timescale is a linearly increasing function of the number of adsorbed particles in the submonolayer regime, but it saturates for more than one adsorbed layer. The slow dynamics exhibits two characteristic exponents, depending on the surface coverage.

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arXiv2015

Self-assembly of colloidal bands driven by a periodic external field

We study the formation of bands of colloidal particles driven by periodic external fields. Using Brownian dynamics, we determine the dependence of the band width on the strength of the particle interactions and on the intensity and periodicity of the field. We also investigate the switching (field-on) dynamics and the relaxation times as a function of the system parameters. The observed scaling relations were analyzed using a simple dynamic density-functional theory of fluids.

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arXiv2015

The effect of anchoring on nematic flow in channels

Understanding the flow of liquid crystals in microfluidic environments plays an important role in many fields, including device design and microbiology. We perform hybrid lattice-Boltzmann simulations of a nematic liquid crystal flowing under an applied pressure gradient in two-dimensional channels with various anchoring boundary conditions at the substrate walls. We investigate the relation between flow rate and pressure gradient and the corresponding profile of the nematic director, and find significant departures from the linear Poiseuille relation. We also identify a morphological transition in the director profile and explain this in terms of an instability in the dynamical equations. We examine the qualitative and quantitative effects of changing the type and strength of the anchoring. Understanding such effects may provide a useful means of quantifying the anchoring of a substrate by measuring its flow properties.

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arXiv2015

Nematic droplets at fibres

The emergence of new techniques for the fabrication of nematic droplets with nontrivial topology provides new routes for the assembly of responsive devices. Here we perform a numerical study of spherical nematic droplets on fibres. We analyse the equilibrium textures and find that, under certain conditions,the nematic can avoid the nucleation of topological defects. We consider in detail a homeotropic nematic droplet wrapped around a fibre with planar anchoring. We investigate the effect of an electric field on the texture of this droplet such type of system. In the presence of a DC field, the system undergoes a Freederickzs-like transition above a given threshold $E_c$. We also consider AC fields, at high and low frequencies, and find that the textures are similar to those observed for static fields, in contrast with recently reported experiments.

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arXiv2014

Effect of the number of patches on the growth of networks of patchy colloids on substrates

We investigate numerically the irreversible aggregation of patchy spherical colloids on a flat substrate. We consider $n$-patch particles and characterize the dependence of the irreversible aggregation kinetics on $n$. For all values of $n$, considered in this study, the growing interface of the aggregate is in the Kardar-Parisi-Zhang universality class, although the bulk structure exhibits a rich dependence on $n$. In particular, the bulk density varies with $n$ and the network is more ordered for particles with fewer patches. Preferred orientations of the bonds are also observed for networks of particles with low $n$.

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