SearcharxivSearch

arXiv subjects

M. Nilsson

Publications and source records attributed to M. Nilsson.

9 recordsLinked to original sources

Magic DIAMOND: Multi-Fascicle Diffusion Compartment Imaging with Tensor Distribution Modeling and Tensor-Valued Diffusion Encoding

Diffusion tensor imaging provides increased sensitivity to microstructural tissue changes compared to conventional anatomical imaging but also presents limited specificity. To tackle this problem, the DIAMOND model subdivides the voxel content into diffusion compartments and draws from diffusion-weighted data to estimate compartmental non-central matrix-variate Gamma distribution of diffusion tensors, thereby resolving crossing fascicles while accounting for their respective heterogeneity. Alternatively, tensor-valued diffusion encoding defines new acquisition schemes tagging specific features of the intra-voxel diffusion tensor distribution directly from the outcome of the measurement. However, the impact of such schemes on estimating brain microstructural features has only been studied in a handful of parametric single-fascicle models. In this work, we derive a general Laplace transform for the non-central matrix-variate Gamma distribution, which enables the extension of DIAMOND to tensor-valued encoded data. We then evaluate this "Magic DIAMOND" model in silico and in vivo on various combinations of tensor-valued encoded data. Assessing uncertainty on parameter estimation via stratified bootstrap, we investigate both voxel-based and fixel-based metrics by carrying out multi-peak tractography. We show that our estimated metrics can be mapped along tracks robustly across regions of fiber crossing, which opens new perspectives for tractometry and microstructure mapping along specific white-matter tracts.

physics.med-ph

Spectroscopy of the superconducting proximity effect in nanowires using integrated quantum dots

The superconducting proximity effect has been the focus of significant research efforts over many years and has recently attracted renewed interest as the basis of topologically non-trivial states in materials with a large spin orbit interaction, with protected boundary states useful for quantum information technologies. However, spectroscopy of these states is challenging because of the limited spatial and energetic control of conventional tunnel barriers. Here, we report electronic spectroscopy measurements of the proximity gap in a semiconducting indium arsenide (InAs) nanowire (NW) segment coupled to a superconductor (SC), using a spatially separated quantum dot (QD) formed deterministically during the crystal growth. We extract the characteristic parameters describing the proximity gap which is suppressed for lower electron densities and fully developed for larger ones. This gate-tunable transition of the proximity effect can be understood as a transition from the long to the short junction regime of subgap bound states in the NW segment. Our device architecture opens up the way to systematic, unambiguous spectroscopy studies of subgap bound states, such as Majorana bound states.

cond-mat.mes-hall

Fidelity of an optical memory based on stimulated photon echoes

We investigated the preservation of information encoded into the relative phase and amplitudes of optical pulses during storage and retrieval in an optical memory based on stimulated photon echo. By interfering photon echoes produced in a Ti-indiffused single-mode Er-doped LiNbO$_{3}$ waveguiding structure at telecom wavelength, we found that decoherence in the atomic medium translates only as losses (and not as degradation) of information, as long as the data pulse series is short compared to the atomic decoherence time. The experimentally measured value of the visibility for interfering echoes is close to 100 %. In addition to the expected three-pulse photon-echo interferences we also observed interference due to a four-pulse photon echo. Our findings are of particular interest for future long-distance quantum communication protocols, which rely on the reversible transfer of quantum states between light and atoms with high fidelity.

quant-ph

Uni-directional polymerization leading to homochirality in the RNA world

The differences between uni-directional and bi-directional polymerization are considered. The uni-directional case is discussed in the framework of the RNA world. Similar to earlier models of this type, where polymerization was assumed to proceed in a bi-directional fashion (presumed to be relevant to peptide nucleic acids), left-handed and right-handed monomers are produced via an autocatalysis from an achiral substrate. The details of the bifurcation from a racemic solution to a homochiral state of either handedness is shown to be remarkably independent of whether the polymerization in uni-directional or bi-directional. Slightly larger differences are seen when dissociation is allowed and the dissociation fragments are being recycled into the achiral substrate.

q-bio.BM

Dissociation in a polymerization model of homochirality

A fully self-contained model of homochirality is presented that contains the effects of both polymerization and dissociation. The dissociation fragments are assumed to replenish the substrate from which new monomers can grow and undergo new polymerization. The mean length of isotactic polymers is found to grow slowly with the normalized total number of corresponding building blocks. Alternatively, if one assumes that the dissociation fragments themselves can polymerize further, then this corresponds to a strong source of short polymers, and an unrealistically short average length of only 3. By contrast, without dissociation, isotactic polymers becomes infinitely long.

q-bio.BM

Homochiral growth through enantiomeric cross-inhibition

The stability and conservation properties of a recently proposed polymerization model are studied. The achiral (racemic) solution is linearly unstable once the relevant control parameter (here the fidelity of the catalyst) exceeds a critical value. The growth rate is calculated for different fidelity parameters and cross-inhibition rates. A chirality parameter is defined and shown to be conserved by the nonlinear terms of the model. Finally, a truncated version of the model is used to derive a set of two ordinary differential equations and it is argued that these equations are more realistic than those used in earlier models of that form.

q-bio.BM

Initial experiments concerning quantum information processing in rare-earth-ion doped crystals

In this paper initial experiments towards constructing simple quantum gates in a solid state material are presented. Instead of using specially tailored materials, the aim is to select a subset of randomly distributed ions in the material, which have the interaction necessary to control each other and therefore can be used to do quantum logic operations. The experimental results demonstrate that part of an inhomogeneously broadened absorption line can be selected as a qubit and that a subset of ions in the material can control the resonance frequency of other ions. This opens the way for the construction of quantum gates in rare-earth-ion doped crystals.

quant-ph

Optimal Mutation Rates on Static Fitness Landscpes

We study the evolution of mutation rates for an asexual population living on a static fitness landscape, consisting of multiple peaks forming an evolutionary staircase. The optimal mutation rate is found by maximizing the diffusion towards higher fitness. Surprisingly the optimal genomic copying fidelity is given by Q = e^(-1/ln(n)) (where n is the genome length), independent of all other parameters in the model. Simulations confirm this theoretical result. We also discuss the relation between the optimal mutation rate on static and dynamic fitness landscapes.

physics.bio-ph