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M. S. Baptista

Publications and source records attributed to M. S. Baptista.

At least 19 recordsLinked to original sources

Plastic neural network with transmission delays promotes equivalence between function and structure

The brain is formed by cortical regions that are associated with different cognitive functions. Neurons within the same region are more likely to connect than neurons in distinct regions, making the brain network to have characteristics of a network of subnetworks. The values of synaptic delays between neurons of different subnetworks are greater than those of the same subnetworks. This difference in communication time between neurons has consequences on the firing patterns observed in the brain, which is directly related to changes in neural connectivity, known as synaptic plasticity. In this work, we build a plastic network of Hodgkin-Huxley neurons in which the connectivity modifications follow a spike-time dependent rule. We define an internal-delay among neurons communicating within the same subnetwork, an external-delay for neurons belonging to distinct subnetworks, and study how these communicating delays affect the entire network dynamics. We observe that the neuronal network exhibits a specific connectivity configuration for each synchronised pattern. Our results show how synaptic delays and plasticity work together to promote the formation of structural coupling among the neuronal subnetworks. We conclude that plastic neuronal networks are able to promote equivalence between function and structure meaning that topology emerges from behaviour and behaviour emerges from topology, creating a complex dynamical process where topology adapts to conform with the plastic rules and firing patterns reflect the changes on the synaptic weights.

q-bio.NC

Bistable firing pattern in a neural network model

Excessively high, neural synchronisation has been associated with epileptic seizures, one of the most common brain diseases worldwide. A better understanding of neural synchronisation mechanisms can thus help control or even treat epilepsy. In this paper, we study neural synchronisation in a random network where nodes are neurons with excitatory and inhibitory synapses, and neural activity for each node is provided by the adaptive exponential integrate-and-fire model. In this framework, we verify that the decrease in the influence of inhibition can generate synchronisation originating from a pattern of desynchronised spikes. The transition from desynchronous spikes to synchronous bursts of activity, induced by varying the synaptic coupling, emerges in a hysteresis loop due to bistability where abnormal (excessively high synchronous) regimes exist. We verify that, for parameters in the bistability regime, a square current pulse can trigger excessively high (abnormal) synchronisation, a process that can reproduce features of epileptic seizures. Then, we show that it is possible to suppress such abnormal synchronisation by applying a small-amplitude external current on less than 10% of the neurons in the network. Our results demonstrate that external electrical stimulation not only can trigger synchronous behaviour, but more importantly, it can be used as a means to reduce abnormal synchronisation and thus, control or treat effectively epileptic seizures.

physics.bio-ph

Inference of topology and the nature of synapses, and the flow of information in neuronal networks

The characterisation of neuronal connectivity is one of the most important matters in neuroscience. In this work, we show that a recently proposed informational quantity, the causal mutual information, employed with an appropriate methodology, can be used not only to correctly infer the direction of the underlying physical synapses, but also to identify their excitatory or inhibitory nature, considering easy to handle and measure bivariate time-series. The success of our approach relies on a surprising property found in neuronal networks by which non-adjacent neurons do "understand" each other (positive mutual information), however this exchange of information is not capable of causing effect (zero transfer entropy). Remarkably, inhibitory connections, responsible for enhancing synchronisation, transfer more information than excitatory connections, known to enhance entropy in the network. We also demonstrate that our methodology can be used to correctly infer directionality of synapses even in the presence of dynamic and observational Gaussian noise, and is also successful in providing the effective directionality of inter modular connectivity, when only mean fields can be measured.

q-bio.NC

How synapses can enhance sensibility of a neural network

In this work, we study the dynamic range in a neuronal network modelled by cellular automaton. We consider deterministic and non-deterministic rules to simulate electrical and chemical synapses. Chemical synapses have an intrinsic time-delay and are susceptible to parameter variations guided by learning Hebbian rules of behaviour. Our results show that chemical synapses can abruptly enhance sensibility of the neural network, a manifestation that can become even more predominant if learning rules of evolution are applied to the chemical synapses.

physics.bio-ph

Tilted excitation implies odd periodic resonances

Our aim is to unveil how resonances of parametric systems are affected when symmetry is broken. We showed numerically and experimentally that odd resonances indeed come about when the pendulum is excited along a tilted direction. Applying the Melnikov subharmonic function, we not only determined analytically the loci of saddle-node bifurcations delimiting resonance regions in parameter space, but also explained these observations by demonstrating that, under the Melnikov method point of view, odd resonances arise due to an extra torque that appears in the asymmetric case.

nlin.CD

Successful network inference from time-series data using Mutual Information Rate

This work uses an information-based methodology to infer the connectivity of complex systems from observed time-series data. We first derive analytically an expression for the Mutual Information Rate (MIR), namely, the amount of information exchanged per unit of time, that can be used to estimate the MIR between two finite-length low-resolution noisy time-series, and then apply it after a proper normalization for the identification of the connectivity structure of small networks of interacting dynamical systems. In particular, we show that our methodology successfully infers the connectivity for heterogeneous networks, different time-series lengths or coupling strengths, and even in the presence of additive noise. Finally, we show that our methodology based on MIR successfully infers the connectivity of networks composed of nodes with different time-scale dynamics, where inference based on Mutual Information fails.

nlin.CD

Chaotic, informational and synchronous behaviour of multiplex networks

The understanding of the relationship between topology and behaviour in interconnected networks would allow to characterise and predict behaviour in many real complex networks since both are usually not simultaneously known. Most previous studies have focused on the relationship between topology and synchronisation. In this work, we provide analytical formulas that shows how topology drives complex behaviour: chaos, information, and weak or strong synchronisation; in multiplex networks with constant Jacobian. We also study this relationship numerically in multiplex networks of Hindmarsh-Rose neurons. Whereas behaviour in the analytically tractable network is a direct but not trivial consequence of the spectra of eigenvalues of the Laplacian matrix, where behaviour may strongly depend on the break of symmetry in the topology of interconnections, in Hindmarsh-Rose neural networks the nonlinear nature of the chemical synapses breaks the elegant mathematical connection between the spectra of eigenvalues of the Laplacian matrix and the behaviour of the network, creating networks whose behaviour strongly depends on the nature (chemical or electrical) of the inter synapses.

nlin.CD

Characterization in bi-parameter space of a non-ideal oscillator

We investigate the dynamical behavior of a non-ideal Duffing oscillator, a system composed of a mass-spring-pendulum driven by a DC motor with limited power supply. To identify new features on Duffing oscillator parameter space due to the limited power supply, we provide an extensive numerical characterization in the bi-parameter space by using Lyapunov exponents. Following this procedure, we identify remarkable new periodic windows, the ones known as Arnold tongues and also shrimp-shaped structures. Such windows appear in highly organized distribution with typical self-similar structures for the shrimps, and, surprisingly, codimension-2 bifurcation as a point of accumulations for the tongues.

nlin.CD

Complementary action of chemical and electrical synapses to perception

We study the dynamic range of a cellular automaton model for a neuronal network with electrical and chemical synapses. The neural network is separated into two layers, where one layer corresponds to inhibitory, and the other corresponds to excitatory neurons. We randomly distribute electrical synapses in the network, in order to analyse the effects on the dynamic range. We verify that electrical synapses have a complementary effect on the enhancement of the dynamic range. The enhancement depends on the proportion of electrical synapses, and also depends on the layer where they are distributed.

nlin.AO

Super persistent transient in a master-slave configuration with Colpitts oscillators

Master-slave systems have been intensively investigated to model the application of chaos to communications. We considered Colpitts oscillators coupled according to a master-slave configuration to study chaos synchronisation. We revealed the existence of super persistent transients in this coupled system. Moreover, we showed that an additive noise added to the slave system may suppress chaos synchronisation. When synchronisation is not suppressed, the noise induces longer transients.

nlin.CD

Parameter Uncertainties on the Predictability of Periodicity and Chaos

Nonlinear dynamical systems, ranging from insect populations to lasers and chemical reactions, might exhibit sensitivity to small perturbations in their control parameters, resulting in uncertainties on the predictability of tunning parameters that lead these systems to either a chaotic or a periodic behavior. By quantifying such uncertainties in four different classes of nonlinear systems, we show that this sensitivity is to be expected because the boundary between the sets of parameters leading to chaos and to periodicity is fractal. Moreover, the dimension of this fractal boundary was shown to be roughly the same for these classes of systems. Using an heuristic model for the way periodic windows appear in parameter spaces, we provide an explanation for the universal character of this fractal boundary.

nlin.CD

Production and Transfer of Energy and Information in Hamiltonian Systems

We present novel results that relate energy and information transfer with sensitivity to initial conditions in chaotic multi-dimensional Hamiltonian systems. We show the relation among Kolmogorov-Sinai entropy, Lyapunov exponents, and upper bounds for the Mutual Information Rate calculated in the Hamiltonian phase space and on bi-dimensional subspaces. Our main result is that the net amount of transfer from kinetic to potential energy per unit of time is a power-law of the upper bound for the Mutual Information Rate between kinetic and potential energies, and also a power-law of the Kolmogorov-Sinai entropy. Therefore, transfer of energy is related with both transfer and production of information. However, the power-law nature of this relation means that a small increment of energy transferred leads to a relatively much larger increase of the information exchanged. Then, we propose an ``experimental'' implementation of a 1-dimensional communication channel based on a Hamiltonian system, and calculate the actual rate with which information is exchanged between the first and last particle of the channel. Finally, a relation between our results and important quantities of thermodynamics is presented.

nlin.CD

Model for tumour growth with treatment by continuous and pulsed chemotherapy

In this work we investigate a mathematical model describing tumour growth under a treatment by chemotherapy that incorporates time-delay related to the conversion from resting to hunting cells. We study the model using values for the parameters according to experimental results and vary some parameters relevant to the treatment of cancer. We find that our model exhibits a dynamical behaviour associated with the suppression of cancer cells, when either continuous or pulsed chemotherapy is applied according to clinical protocols, for a large range of relevant parameters. When the chemotherapy is successful, the predation coefficient of the chemotherapic agent acting on cancer cells varies with the infusion rate of chemotherapy according to an inverse relation. Finally, our model was able to reproduce the experimental results obtained by Michor and collaborators [Nature, 435, 1267 (2005)] about the exponential decline of cancer cells when patients are treated with the drug glivec.

q-bio.TO

Mutual information rate and bounds for it

The amount of information exchanged per unit of time between two nodes in a dynamical network or between two data sets is a powerful concept for analysing complex systems. This quantity, known as the mutual information rate (MIR), is calculated from the mutual information, which is rigorously defined only for random systems. Moreover, the definition of mutual information is based on probabilities of significant events. This work offers a simple alternative way to calculate the MIR in dynamical (deterministic) networks or between two data sets (not fully deterministic), and to calculate its upper and lower bounds without having to calculate probabilities, but rather in terms of well known and well defined quantities in dynamical systems. As possible applications of our bounds, we study the relationship between synchronisation and the exchange of information in a system of two coupled maps and in experimental networks of coupled oscillators.

nlin.CD

Collective Almost Synchronization in Complex Networks

This work introduces the phenomenon of Collective Almost Synchronization (CAS), which describes a universal way of how patterns can appear in complex networks even for small coupling strengths. The CAS phenomenon appears due to the existence of an approximately constant local mean field and is characterized by having nodes with trajectories evolving around periodic stable orbits. Common notion based on statistical knowledge would lead one to interpret the appearance of a local constant mean field as a consequence of the fact that the behavior of each node is not correlated to the behaviors of the others. Contrary to this common notion, we show that various well known weaker forms of synchronization (almost, time-lag, phase synchronization, and generalized synchronization) appear as a result of the onset of an almost constant local mean field. If the memory is formed in a brain by minimising the coupling strength among neurons and maximising the number of possible patterns, then the CAS phenomenon is a plausible explanation for it.

nlin.CD

The combined effect of chemical and electrical synapses in small Hindmarsch-Rose neural networks on synchronisation and on the rate of information

In this work we studied the combined action of chemical and electrical synapses in small networks of Hindmarsh-Rose (HR) neurons on the synchronous behaviour and on the rate of information produced (per time unit) by the networks. We show that if the chemical synapse is excitatory, the larger the chemical synapse strength used the smaller the electrical synapse strength needed to achieve complete synchronisation, and for moderate synaptic strengths one should expect to find desynchronous behaviour. Otherwise, if the chemical synapse is inhibitory, the larger the chemical synapse strength used the larger the electrical synapse strength needed to achieve complete synchronisation, and for moderate synaptic strengths one should expect to find synchronous behaviours. Finally, we show how to calculate semi-analytically an upper bound for the rate of information produced per time unit (Kolmogorov-Sinai entropy) in larger networks. As an application, we show that this upper bound is linearly proportional to the number of neurons in a network whose neurons are highly connected.

nlin.CD

Density of first Poincaré returns, periodic orbits, and Kolmogorov-Sinai entropy

It is known that unstable periodic orbits of a given map give information about the natural measure of a chaotic attractor. In this work we show how these orbits can be used to calculate the density function of the first Poincaré returns. The close relation between periodic orbits and the Poincaré returns allows for estimates of relevant quantities in dynamical systems, as the Kolmogorov-Sinai entropy, in terms of this density function. Since return times can be trivially observed and measured, our approach to calculate this entropy is highly oriented to the treatment of experimental systems. We also develop a method for the numerical computation of unstable periodic orbits.

nlin.CD

Kolmogorov-Sinai entropy from recurrence times

Observing how long a dynamical system takes to return to some state is one of the most simple ways to model and quantify its dynamics from data series. This work proposes two formulas to estimate the KS entropy and a lower bound of it, a sort of Shannon's entropy per unit of time, from the recurrence times of chaotic systems. One formula provides the KS entropy and is more theoretically oriented since one has to measure also the low probable very long returns. The other provides a lower bound for the KS entropy and is more experimentally oriented since one has to measure only the high probable short returns. These formulas are a consequence of the fact that the series of returns do contain the same information of the trajectory that generated it. That suggests that recurrence times might be valuable when making models of complex systems.

nlin.CD