SearcharxivSearch

arXiv subjects

M. Sanchez Miranda

Publications and source records attributed to M. Sanchez Miranda.

2 recordsLinked to original sources

Organic Electrochemical Transistor Arrays with Integrated Lipid-Sealed Femtolitre Chambers for Simultaneous Electrical and Optical Detection of Membrane Protein Activity

We report a method for producing an array of fifty two ion-sensitive PEDOT:PSS organic electrochemical transistors on a glass coverslip, each featuring an integrated fluoropolymer microwell sealed with lipid bilayer into which membrane proteins can be inserted for simultaneous electrical and fluorescence microscopy studies. To demonstrate capability, we fill the microwells with an `inner' phosphate assay buffer solution containing 20 $μ$M Alexa-488 dye and 50 mM KCl, seal the microwells with lipid bilayer using an aqueous-organic-aqueous liquid exchange technique, and then fill the common flow-cell volume above the sealed microwells with a dye-free `outer' phosphate assay buffer containing 100 mM KCl. We insert $α$-hemolysin, which embeds into the lipid bilayer forming a heptameric pore with diameter ~ 2.6 nm. The pore allows K$^{+}$ ions to diffuse into the microwell and Alexa-488 dye molecules to diffuse out of the microwell producing a corresponding drop in transistor conductance and microwell fluorescence intensity, respectively. These two signals occur at different timescales, consistent with the known size difference between K$^{+}$ ions and Alexa-488 molecules. Our approach to fabricating microwell arrays with PEDOT:PSS OECTs incorporated into the bottom of selected microwells distributed in the array is both scalable and versatile, opening a path to studies using larger arrays and with other membrane proteins embedded in the lipid bilayer sealing the microwells.

cond-mat.soft

Prospects for single-molecule electrostatic detection in molecular motor gliding motility assays

Molecular motor gliding motility assays based on myosin/actin or kinesin/microtubules are of interest for nanotechnology applications ranging from cargo-trafficking in lab-on-a-chip devices to novel biocomputation strategies. Prototype systems are typically monitored by expensive and bulky fluorescence microscopy systems and the development of integrated, direct electric detection of single filaments would strongly benefit applications and scale-up. We present estimates for the viability of such a detector by calculating the electrostatic potential change generated at a carbon nanotube transistor by a motile actin filament or microtubule under realistic gliding assay conditions. We combine this with detection limits based on previous state-of-the-art experiments using carbon nanotube transistors to detect catalysis by a bound lysozyme molecule and melting of a bound short-strand DNA molecule. Our results show that detection should be possible for both actin and microtubules using existing low ionic strength buffers given good device design, e.g., by raising the transistor slightly above the guiding channel floor. We perform studies as a function of buffer ionic strength, height of the transistor above the guiding channel floor, presence/absence of the casein surface passivation layer for microtubule assays and the linear charge density of the actin filaments/microtubules. We show that detection of microtubules is a more likely prospect given their smaller height of travel above the surface, higher negative charge density and the casein passivation, and may possibly be achieved with the nanoscale transistor sitting directly on the guiding channel floor.

cond-mat.mes-hall