arXiv subjects

M. Varela

Publications and source records attributed to M. Varela.

At least 19 recordsLinked to original sources

arXiv2025

Two-Stage nnU-Net for Automatic Multi-class Bi-Atrial Segmentation from LGE-MRIs

Late gadolinium enhancement magnetic resonance imaging (LGE-MRI) is used to visualise atrial fibrosis and scars, providing important information for personalised atrial fibrillation (AF) treatments. Since manual analysis and delineations of these images can be both labour-intensive and subject to variability, we develop an automatic pipeline to perform segmentation of the left atrial (LA) cavity, the right atrial (RA) cavity, and the wall of both atria on LGE-MRI. Our method is based on a two-stage nnU-Net architecture, combining 2D and 3D convolutional networks, and incorporates adaptive histogram equalisation to improve tissue contrast in the input images and morphological operations on the output segmentation maps. We achieve Dice similarity coefficients of 0.92 +/- 0.03, 0.93 +/- 0.03, 0.71 +/- 0.05 and 95% Hausdorff distances of (3.89 +/- 6.67) mm, (4.42 +/- 1.66) mm and (3.94 +/- 1.83) mm for LA, RA, and wall, respectively. The accurate delineation of the LA, RA and the myocardial wall is the first step in analysing atrial structure in cardiovascular patients, especially those with AF. This can allow clinicians to provide adequate and personalised treatment plans in a timely manner.

eess.IV↗

arXiv2024

Modulating the magnetic properties of Fe3C/C encapsulated core/shell nanoparticles for potential prospects in biomedicine

In the pursuit of alternative and less invasive medical treatments, magnetic nanoparticles (NPs) have gained significant relevance. Iron carbides NPs stand out for their higher saturation magnetizations compared to iron oxides, while maintaining a suitable biocompatibility. In this work, high control is achieved over the composition and morphology of Fe3C/C encapsulated core/shell nanoparticles through fine-tuning of the sol-gel synthesis parameters. Specifically, the impact of decreasing each surfactant concentration added, nt, the same both for oleylamine (ON) and oleic acid (OA), has been explored. A minimum value for such parameter denoted by nt,min. was required to produce pure Fe3C@C NP-composites. For nt < 4 mmol, some minor {\alpha}-Fe impurities arise, and the effective carburization becomes unstable due to insufficient carbon. The magnetic properties of the materials prepared were optimized by reducing the excess carbon from surfactants, resulting in saturation magnetization values of 86 emu/g. (for pure Fe3C at nt = 5 mmol) and 102 emu/g (for Fe3C and <2 % w.t. of {\alpha}-Fe impurity at nt = 4 mmol). In view of this, several cytotoxicity studies for different Fe3C@C samples were conducted, exhibiting excellent biocompatibility in cell-based assays, which could lead to potential application at the forefront of biomedical fields.

cond-mat.mtrl-sci↗

arXiv2024

High stability 2D electron gases formed in Si3N4/Al//KTaO3 heterostructures: synthesis and in-depth interfacial characterization

The two-dimensional electron gas (2DEG) found in KTaO3-based interfaces has garnered attention due to its remarkable electronic properties. In this study, we investigated the conducting system embedded at the Si3N4/Al//KTO(110) heterostructure. We demonstrate that the Al/KTO interface supports a conducting system, with the Si3N4 passivation layer acting as a barrier to oxygen diffusion, enabling ex-situ characterization. Our findings reveal that the mobility and carrier density of the system can be tuned by varying the Al layer thickness. Using scanning transmission electron microscopy, electron energy-loss spectroscopy, X-ray photoemission spectroscopy, and time-of-flight secondary ion mass spectrometry, we characterized the structural and chemical composition of the interface. We found that the Al layer fully oxidizes into AlOx, drawing oxygen from the KTaO3 substrate. The oxygen depletion zone extends 3-5 nm into the substrate and correlates to the Al thickness. Heterostructures with thicker Al layers exhibit higher carrier densities but lower mobilities, likely due to interactions with the oxygen vacancies that act as scattering centers. These findings highlight the importance of considering the effect and extent of the oxygen depletion zone when designing and modeling two-dimensional electron systems in complex oxides.

cond-mat.mtrl-sci↗

arXiv2024

Classification of Mitral Regurgitation from Cardiac Cine MRI using Clinically-Interpretable Morphological Features

The assessment of mitral regurgitation (MR) using cardiac MRI, particularly Cine MRI, is a promising technique due to its wide availability. However, some of the temporal information available in clinical Cine MRI may not be fully utilised, as it requires detailed temporal analysis across different cardiac views. We propose a new approach to identify MR which automatically extracts 4-dimensional (3D + Time) morphological features from the reconstructed mitral annulus (MA) using Cine long-axis (LAX) views MRI. Our feature extraction involves locating the MA insertion points to derive the reconstructed MA geometry and displacements, resulting in a total of 187 candidate features. We identify the 25 most relevant mitral valve features using minimum-redundancy maximum-relevance (MRMR) feature selection technique. We then apply linear discriminant analysis (LDA) and random forest (RF) model to determine the presence of MR. Both LDA and RF demonstrate good performance, with accuracies of 0.72+/-0.05 and 0.73+/-0.09, respectively, in a 5-fold cross-validation analysis. This approach will be incorporated in an automatic tool to identify valvular diseases from Cine MRI by integrating both handcrafted and deep features. Our tool will facilitate the diagnosis of valvular disease from conventional cardiac MRI scans with no additional scanning or image analysis penalty. All code is made available on an open-source basis at: https://github.com/HenryOn2021/MA_Morphological_Features.

eess.IV↗

arXiv2024

Structural and optical properties of self-assembled AlN nanowires grown on SiO2/Si substrates by molecular beam epitaxy

Self assembled AlN nanowires (NWs) are grown by plasma assisted molecular beam epitaxy (PAMBE) on SiO2 / Si (111) substrates. Using a combination of in-situ reflective high energy electron diffraction and ex situ X ray diffraction (XRD), we show that the NWs grow nearly strain free, preferentially perpendicular to the amorphous SiO2 interlayer and without epitaxial relationship to Si(111) substrate, as expected. Scanning electron microscopy investigation reveals significant NWs coalescence, which results in their progressively increasing diameter and formation of columnar structures with non hexagonal cross section. Making use of scanning transmission electron microscopy (STEM), the NWs initial diameters are found in the 20 to 30 nm range. In addition, the formation of a thin (30 nm) polycrystalline AlN layer is observed on the substrate surface. Regarding the structural quality of the AlN NWs, STEM measurements reveal the formation of extended columnar regions, which grow with a virtually perfect metal-polarity wurtzite arrangement and with extended defects only sporadically observed. Combination of STEM and electron energy loss spectroscopy (EELS) reveals the formation of continuous aluminum oxide (1 to 2 nm) on the NW surface. Low temperature photoluminescence measurements reveal a single near band edge (NBE) emission peak, positioned at 6.03 eV (at 2 K), a value consistent with nearly zero NW strain evidenced by XRD and in agreement with the values obtained on AlN bulk layers synthesized by other growth techniques. The significant full width at half maximum of NBE emission, found at 20 meV (at 2 K), suggests that free and bound excitons are mixed together within this single emission band.

cond-mat.mtrl-sci↗

arXiv2023

Automatic Aortic Valve Pathology Detection from 3-Chamber Cine MRI with Spatio-Temporal Attention Maps

The assessment of aortic valve pathology using magnetic resonance imaging (MRI) typically relies on blood velocity estimates acquired using phase contrast (PC) MRI. However, abnormalities in blood flow through the aortic valve often manifest by the dephasing of blood signal in gated balanced steady-state free precession (bSSFP) scans (Cine MRI). We propose a 3D classification neural network (NN) to automatically identify aortic valve pathology (aortic regurgitation, aortic stenosis, mixed valve disease) from Cine MR images. We train and test our approach on a retrospective clinical dataset from three UK hospitals, using single-slice 3-chamber cine MRI from N = 576 patients. Our classification model accurately predicts the presence of aortic valve pathology (AVD) with an accuracy of 0.85 +/- 0.03 and can also correctly discriminate the type of AVD pathology (accuracy: 0.75 +/- 0.03). Gradient-weighted class activation mapping (Grad-CAM) confirms that the blood pool voxels close to the aortic root contribute the most to the classification. Our approach can be used to improve the diagnosis of AVD and optimise clinical CMR protocols for accurate and efficient AVD detection.

eess.IV↗

arXiv2022

Electronic structure of the highly conductive perovskite oxide SrMoO$_3$

We use angle-resolved photoemission to map the Fermi surface and quasiparticle dispersion of bulk-like thin films of SrMoO$_3$ grown by pulsed laser deposition. The electronic self-energy deduced from our data reveals weak to moderate correlations in SrMoO$_3$, consistent with our observation of well-defined electronic states over the entire occupied band width. We further introduce spectral function calculations that combine dynamical mean-field theory with an unfolding procedure of density functional calculations and demonstrate good agreement of this approach with our experiments.

cond-mat.str-el↗

arXiv2020

Origin of the Large Perpendicular Magnetic Anisotropy in Nanometer-thick Epitaxial Graphene/Co/Heavy Metal Heterostructures

A combination of theoretical modelling and experiments reveals the origin of the large perpendicular magnetic anisotropy (PMA) that appears in nanometer-thick epitaxial Co films intercalated between graphene (Gr) and a heavy metal (HM) substrate, as a function of the Co thickness. High quality epitaxial Gr/Co\n/HM(111) (HM=Pt,Ir) heterostructures are grown by intercalation below graphene, which acts as a surfactant that kinetically stabilizes the pseudomorphic growth of highly perfect Co face-centered tetragonal ($fct$) films, with a reduced number of stacking faults as the only structural defect observable by high resolution scanning transmission electron microscopy (HR-STEM). Magneto-optic Kerr effect (MOKE) measurements show that such heterostructures present PMA up to large Co critical thicknesses of about 4~nm (20~ML) and 2~nm (10~ML) for Pt and Ir substrates, respectively, while X-ray magnetic circular dichroism (XMCD) measurements show an inverse power law of the anistropy of the orbital moment with Co thickness, reflecting its interfacial nature, that changes sign at about the same critical values. First principles calculations show that, regardless of the presence of graphene, ideal Co $fct$ films on HM buffers do not sustain PMAs beyond around 6~MLs due to the in-plane contribution of the inner bulk-like Co layers. The large experimental critical thicknesses sustaining PMA can only be retrieved by the inclusion of structural defects that promote a local $hcp$ stacking such as twin boundaries or stacking faults. Remarkably, a layer resolved analysis of the orbital momentum anisotropy reproduces its interfacial nature, and reveals that the Gr/Co interface contribution is comparable to that of the Co/Pt(Ir).

cond-mat.mtrl-sci↗

arXiv2019

Controlling the strength of ferromagnetic order in YBa$_2$Cu$_3$O$_7$/La$_{2/3}$Ca$_{1/3}$MnO$_3$ multilayers

With dc magnetisation and polarized neutron reflectometry we studied the ferromagnetic response of YBa$_2$Cu$_3$O$_7$/La$_{2/3}$Ca$_{1/3}$MnO$_3$ (YBCO/LCMO) multilayers that are grown with pulsed laser deposition. We found that whereas for certain growth conditions (denoted as A-type) the ferromagnetic moment of the LCMO layer is strongly dependent on the structural details of the YBCO layer on which it is deposited, for others (B-type) the ferromagnetism of LCMO is much more robust. Both kinds of multilayers are of similar structural quality, but electron energy-loss spectroscopy (EELS) studies with a scanning transmission electron microscope reveal an enhanced average Mn oxidation state of +3.5 for the A-type as opposed to the B-type samples for which it is close to the nominal value of +3.33. The related, additional hole doping of the A-type LCMO layers, which likely originates from La and/or Mn vacancies, can explain their fragile ferromagnetic order since it places them close to the boundary of the ferromagnetic order at which even weak perturbations can induce an antiferromagnetic or glassy state. On the other hand, we show that the B-type samples allow one to obtain YBCO/LCMO heterostructures with very thick YBCO layers and, yet, strongly ferromagnetic LCMO layers.

cond-mat.supr-con↗

arXiv2019

Effect of different buffer layers on the quality of InGaN layers grown on Si

This work studies the effect of four different types of buffer layers on the structural and optical properties of InGaN layers grown on Si(111) substrates and their correlation with electrical characteristics. The vertical electrical conduction of n-InGaN/buffer-layer/p-Si heterostructures, with In composition near 46%, which theoretically produces an alignment of the bands, is analyzed. Droplet elimination by radical-beam irradiation was successfully applied to grow high quality InGaN films on Si substrates for the first time. Among several buffer choices, an AlN buffer layer with a thickness above 24 nm improves the structural and optical quality of the InGaN epilayer while keeping a top to bottom ohmic behavior. These results will allow fabricating double-junction InGaN/Si solar cells without the need of tunnel junctions between the two sub-cells, therefore simplifying the device design.

physics.app-ph↗

arXiv2019

Factors limiting ferroelectric field-effect doping in complex-oxide heterostructures

Ferroelectric field-effect doping has emerged as a powerful approach to manipulate the ground state of correlated oxides, opening the door to a new class of field-effect devices. However, this potential is not fully exploited so far, since the size of the field-effect doping is generally much smaller than expected. Here we study the limiting factors through magneto-transport, scanning transmission electron and piezo-response force microscopy in ferroelectric/superconductor (YBa2Cu3O7-δ /BiFeO3) heterostructures, a model system showing very strong field-effects. Still, we find that they are limited in the first place by an incomplete ferroelectric switching. This can be explained by the existence of a preferential polarization direction set by the atomic terminations at the interface. More importantly, we also find that the field-effect carrier doping is accompanied by a strong modulation of the carrier mobility. Besides making quantification of field-effects via Hall measurements not straightforward, this finding suggests that ferroelectric poling produces structural changes (e.g. charged defects or structural distortions) in the correlated oxide channel. Those findings have important consequences for the understanding of ferroelectric field-effects and for the strategies to further enhance them.

cond-mat.mtrl-sci↗

arXiv2019

Localization of Yttrium Segregation within YSZ Grain Boundary Dislocation Cores

Ionic conductivity blocking at grain boundaries in polycrystalline electrolytes is one of the main obstacles that need to be overcome in order to improve the performance of solid state fuel cells and batteries. To this aim, harnessing the physical properties of grain boundaries in ionic conducting materials such as yttria stabilized zirconia (YSZ) down to the atomic scale arises as a greatly important task. Here we present a structural and compositional analysis of a single grain boundary in a 9 mol% yttria content YSZ bicrystal by means of aberration corrected scanning transmission electron microscopy. Our studies combine strain and compositional atomic resolution analysis with density-functional-theory calculations in order to find a preferential segregation of yttrium to the expansive atomic sites at the grain boundary dislocation cores. These results address a crucial step towards the understanding of the physical properties of grain boundaries down to atomic dimensions.

cond-mat.mtrl-sci↗

arXiv2018

Low thermal conductivity in La-filled cobalt antimonide skutterudites with an inhomogeneous filling factor prepared under high-pressure conditions

La-filled skutterudites LaxCo4Sb12 (x : 0.25 and 0.5) have been synthesized and sintered in one step under high-pressure conditions at 3.5 GPa in a piston-cylinder hydrostatic press. The structural properties of the reaction products were characterized by synchrotron X-ray powder diffraction, clearly showing an uneven filling factor of the skutterudite phases, confirmed by transmission electron microscopy. The non-homogeneous distribution of La filling atoms is adequate to produce a significant decrease in lattice thermal conductivity, mainly due to strain field scattering of high-energy phonons. Furthermore, the lanthanum filler primarily acts as an Einstein-like vibrational mode having a strong impact on the phonon scattering. Extra-low thermal conductivity values of 2.39 W/mK and 1.30 W/mK are measured for La0.25Co4Sb12 and La0.5Co4Sb12 nominal compositions at 780 K, respectively. Besides this, lanthanum atoms have contributed to increase the charge carrier concentration in the samples. In the case of La0.25Co4Sb12, there is an enhancement of the power factor and an improvement of the thermoelectric properties.

cond-mat.mtrl-sci↗

arXiv2017

Hybridization-controlled charge transfer and induced magnetism at correlated oxide interfaces

At interfaces between conventional materials, band bending and alignment are classically controlled by differences in electrochemical potential. Applying this concept to oxides in which interfaces can be polar and cations may adopt a mixed valence has led to the discovery of novel two-dimensional states between simple band insulators such as LaAlO3 and SrTiO3. However, many oxides have a more complex electronic structure, with charge, orbital and/or spin orders arising from correlations between transition metal and oxygen ions. Strong correlations thus offer a rich playground to engineer functional interfaces but their compatibility with the classical band alignment picture remains an open question. Here we show that beyond differences in electron affinities and polar effects, a key parameter determining charge transfer at correlated oxide interfaces is the energy required to alter the covalence of the metaloxygen bond. Using the perovskite nickelate (RNiO3) family as a template, we probe charge reconstruction at interfaces with gadolinium titanate GdTiO3. X-ray absorption spectroscopy shows that the charge transfer is thwarted by hybridization effects tuned by the rare-earth (R) size. Charge transfer results in an induced ferromagnetic-like state in the nickelate, exemplifying the potential of correlated interfaces to design novel phases. Further, our work clarifies strategies to engineer two-dimensional systems through the control of both doping and covalence.

cond-mat.str-el↗

arXiv2017

Superconductivity and charge carrier localization in ultrathin $\mathbf{{La_{1.85}Sr_{0.15}CuO_4}/{La_2CuO_4}}$ bilayers

$\mathrm{La_{1.85}Sr_{0.15}CuO_4}$/$\mathrm{La_2CuO_4}$ (LSCO15/LCO) bilayers with a precisely controlled thickness of N unit cells (UCs) of the former and M UCs of the latter ([LSCO15\_N/LCO\_M]) were grown on (001)-oriented {\slao} (SLAO) substrates with pulsed laser deposition (PLD). X-ray diffraction and reciprocal space map (RSM) studies confirmed the epitaxial growth of the bilayers and showed that a [LSCO15\_2/LCO\_2] bilayer is fully strained, whereas a [LSCO15\_2/LCO\_7] bilayer is already partially relaxed. The \textit{in situ} monitoring of the growth with reflection high energy electron diffraction (RHEED) revealed that the gas environment during deposition has a surprisingly strong effect on the growth mode and thus on the amount of disorder in the first UC of LSCO15 (or the first two monolayers of LSCO15 containing one $\mathrm{CuO_2}$ plane each). For samples grown in pure $\mathrm{N_2O}$ gas (growth type-B), the first LSCO15 UC next to the SLAO substrate is strongly disordered. This disorder is strongly reduced if the growth is performed in a mixture of $\mathrm{N_2O}$ and $\mathrm{O_2}$ gas (growth type-A). Electric transport measurements confirmed that the first UC of LSCO15 next to the SLAO substrate is highly resistive and shows no sign of superconductivity for growth type-B, whereas it is superconducting for growth type-A. Furthermore, we found, rather surprisingly, that the conductivity of the LSCO15 UC next to the LCO capping layer strongly depends on the thickness of the latter. A LCO capping layer with 7~UCs leads to a strong localization of the charge carriers in the adjacent LSCO15 UC and suppresses superconductivity. The magneto-transport data suggest a similarity with the case of weakly hole doped LSCO single crystals that are in a so-called {"{cluster-spin-glass state}"}

cond-mat.supr-con↗

arXiv2016

Granular superconductivity and magnetic-field-driven recovery of macroscopic coherence in a cuprate/manganite multilayer

We show that in Pr$ _{0.5} $La$ _{0.2} $Ca$ _{0.3} $MnO$ _{3} $/YBa$ _{2} $Cu$ _{3} $O$ _{7} $ (PLCMO/YBCO) multilayers the low temperature state of YBCO is very resistive and resembles the one of a granular superconductor or a frustrated Josephson-junction network. Notably, a coherent superconducting response can be restored with a large magnetic field which also suppresses the charge-orbital order in PLCMO. This coincidence suggests that the granular superconducting state of YBCO is induced by the charge-orbital order of PLCMO. The coupling mechanism and the nature of the induced inhomogeneous state in YBCO remain to be understood.

cond-mat.supr-con↗

arXiv2016

X-ray absorption study of the ferromagnetic Cu moment at the $\mathbf{{YBa_2Cu_3O_7}/{La_{2/3}Ca_{1/3}MnO_3}}$ interface and the variation of its exchange interaction with the Mn moment

With x-ray absorption spectroscopy and polarized neutron reflectometry we studied how the magnetic proximity effect at the interface between the cuprate high-$T_C$ superconductor $\mathrm{YBa_2Cu_3O_7}$ (YBCO) and the ferromagnet $\mathrm{La_{2/3}Ca_{1/3}MnO_3}$ (LCMO) is related to the electronic and magnetic properties of the LCMO layers. In particular, we explored how the magnitude of the ferromagnetic Cu moment on the YBCO side depends on the strength of the antiferromagnetic (AF) exchange coupling with the Mn moment on the LCMO side. We found that the Cu moment remains sizeable if the AF coupling with the Mn moments is strongly reduced or even entirely suppressed. The ferromagnetic order of the Cu moments thus seems to be intrinsic to the interfacial CuO$_2$ planes and related to a weakly ferromagnetic intra-planar exchange interaction. The latter is discussed in terms of the partial occupation of the Cu $3d_{3z^2-r^2}$ orbitals, which occurs in the context of the so-called orbital reconstruction of the interfacial Cu ions.

cond-mat.mtrl-sci↗

arXiv2014

Synthetic magnetoelectric coupling in a nanocomposite multiferroic

Given the paucity of single phase multiferroic materials (with large ferromagnetic moment), composite systems seem an attractive solution in the quest to realize magnetoelectric cou-pling between ferromagnetic and ferroelectric order parameters. Despite having antiferro-magnetic order, BiFeO3 (BFO) has nevertheless been a key material in this quest due to excel-lent ferroelectric properties at room temperature. We studied a superlattice composed of 8 repetitions of 6 unit cells of La0.7Sr0.3MnO3 (LSMO) grown on 5 unit cells of BFO. Significant net uncompensated magnetization in BFO is demonstrated using polarized neutron reflectometry in an insulating superlattice. Remarkably, the magnetization enables magnetic field to change the dielectric properties of the superlattice, which we cite as an example of synthetic magnetoelectric coupling. Importantly, this controlled creation of magnetic moment in BFO suggests a much needed path forward for the design and implementation of integrated oxide devices for next generation magnetoelectric data storage platforms.

cond-mat.mes-hall↗