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Magnus Bakke Botnan

Publications and source records attributed to Magnus Bakke Botnan.

22 records · Page 2Linked to original sources

Algebraic Stability of Zigzag Persistence Modules

The stability theorem for persistent homology is a central result in topological data analysis. While the original formulation of the result concerns the persistence barcodes of $\mathbb{R}$-valued functions, the result was later cast in a more general algebraic form, in the language of \emph{persistence modules} and \emph{interleavings}. In this paper, we establish an analogue of this algebraic stability theorem for zigzag persistence modules. To do so, we functorially extend each zigzag persistence module to a two-dimensional persistence module, and establish an algebraic stability theorem for these extensions. One part of our argument yields a stability result for free two-dimensional persistence modules. As an application of our main theorem, we strengthen a result of Bauer et al. on the stability of the persistent homology of Reeb graphs. Our main result also yields an alternative proof of the stability theorem for level set persistent homology of Carlsson et al.

math.AT↗

Using persistent homology to reveal hidden information in neural data

We propose a method, based on persistent homology, to uncover topological properties of a priori unknown covariates of neuron activity. Our input data consist of spike train measurements of a set of neurons of interest, a candidate list of the known stimuli that govern neuron activity, and the corresponding state of the animal throughout the experiment performed. Using a generalized linear model for neuron activity and simple assumptions on the effects of the external stimuli, we infer away any contribution to the observed spike trains by the candidate stimuli. Persistent homology then reveals useful information about any further, unknown, covariates.

q-bio.NC↗

Approximating Persistent Homology in Euclidean Space Through Collapses

The Čech complex is one of the most widely used tools in applied algebraic topology. Unfortunately, due to the inclusive nature of the Čech filtration, the number of simplices grows exponentially in the number of input points. A practical consequence is that computations may have to terminate at smaller scales than what the application calls for. In this paper we propose two methods to approximate the Čech persistence module. Both are constructed on the level of spaces, i.e. as sequences of simplicial complexes induced by nerves. We also show how the bottleneck distance between such persistence modules can be understood by how tightly they are sandwiched on the level of spaces. In turn, this implies the correctness of our approximation methods. Finally, we implement our methods and apply them to some example point clouds in Euclidean space.

math.AT↗