arXiv subjects

Mahdi Esmaily

Publications and source records attributed to Mahdi Esmaily.

11 recordsLinked to original sources

arXiv2024

Introducing a Harmonic Balance Navier-Stokes Finite Element Solver to Accelerate Cardiovascular Simulations

The adoption of cardiovascular simulations for diagnosis and surgical planning on a patient-specific basis requires the development of faster methods than the existing state-of-the-art techniques. To address this need, we leverage the periodic nature of these flows to accurately capture their time-dependence using spectral discretization. Owing to the reduced size of the discrete problem, the resulting approach, known as the harmonic balance method, significantly lowers the solution cost when compared against the conventional time marching methods. This study describes a stabilized finite element implementation of the harmonic balanced method that targets the simulation of physically-stable time-periodic flows. That stabilized method is based on the Galerkin/least-squares formulation that permits stable solution in convection-dominant flows and convenient use of the same interpolation functions for velocity and pressure. We test this solver against its equivalent time marching method using three common physiological cases where blood flow is modeled in a Glenn operation, a cerebral artery, and a left main coronary artery. Using the conventional time marching solver, simulating these cases takes more than ten hours. That cost is reduced by up to two orders of magnitude when the proposed harmonic balance solver is utilized, where a solution is produced in approximately 30 minutes. We show that that solution is in excellent agreement with the conventional solvers when the number of modes is sufficiently large to accurately represent the imposed boundary conditions.

math.NA↗

arXiv2024

Multi-scale simulation of red blood cell trauma in large-scale high-shear flows after Norwood operation

Cardiovascular surgeries and mechanical circulatory support devices create non-physiological blood flow conditions that can be detrimental, especially for pediatric patients. A source of complications is mechanical red blood cell (RBC) damage induced by the localized supraphysiological shear fields. To understand such complications, we introduce a multi-scale numerical model to predict the risk of hemolysis in a set of idealized anatomies. We employed our in-house CFD solver coupled with Lagrangian tracking and cell-resolved fluid-structure interaction to measure flow-induced stresses and strains on the RBC membrane. The Norwood procedure, well-known to be associated with high mortality rate, is selected for its importance in the survival of the single-ventricle population. We simulated three anatomies including 2.5mm and 4.0mm diameter modified Blalock-Taussig (BT) shunts and a 2.5mm central shunt (CS), with hundreds of RBCs in each case for statistical analysis. The results show that the conditions created by these surgeries can elongate RBCs by more than two-fold (3.1% of RBCs for 2.5mm BT shunt, 1.4% for 4mm BT shunt, and 8.8% for CS). Shear and areal strain metrics also reveal that the central shunt creates the greatest deformations on the RBCs membrane, indicating it is a more hemolytic procedure in comparison to the BT shunt. Between the two BT shunts, the smaller diameter is slightly more prone to hemolysis. These conclusions are confirmed when strain history and different damage thresholds are considered. The spatial damage maps produced based on these metrics highlighted hot zones that match the clinical images of shunt thrombosis.

physics.flu-dyn↗

arXiv2024

A new stabilized time-spectral finite element solver for fast simulation of blood flow

The increasing application of cardiorespiratory simulations for diagnosis and surgical planning necessitates the development of computational methods significantly faster than the current technology. To achieve this objective, we leverage the time-periodic nature of these flows by discretizing equations in the frequency domain instead of the time domain. This approach markedly reduces the size of the discrete problem and, consequently, the simulation cost. With this motivation, we introduce a finite element method for simulating time-periodic flows that are physically stable. The proposed time-spectral method is formulated by augmenting the baseline Galerkin's method with a least-squares penalty term that is weighed by a positive-definite stabilization matrix. An error estimate is established for the convective-diffusive system, showing that the proposed method emulates the behavior of existing standard time methods including optimal convergence rate in diffusive regimes and stability in strong convection. This method is tested on a patient-specific Fontan model at nominal Reynolds and Womersley numbers of 500 and 10, respectively, demonstrating its ability to replicate conventional time simulation results using as few as 7 modes at 11% of the computational cost. Owing to its higher local-to-processor computation density, the proposed method also exhibits improved parallel scalability for fast simulation of time-critical applications.

math.NA↗

arXiv2023

Stabilized finite element methods for the time-spectral convection-diffusion equation

Discretizing a solution in the Fourier domain rather than the time domain presents a significant advantage in solving transport problems that vary smoothly and periodically in time, such as cardiorespiratory flows. The finite element solution of the resulting time-spectral formulation is investigated here for the convection-diffusion equations. In addition to the baseline Galerkin's method, we consider stabilized approaches inspired by the streamline upwind Petrov/Galerkin (SUPG), Galerkin/least square (GLS), and variational multiscale (VMS) methods. We also introduce a new augmented SUPG (ASU) method that, by design, produces a nodally exact solution in one dimension for piecewise linear interpolation functions. Comparing these five methods using 1D, 2D, and 3D canonical test cases shows while the ASU is most accurate overall, it exhibits stability issues in extremely oscillatory flows with a high Womersley number in 3D. The GLS method, which is identical to the VMS for this problem, presents an attractive alternative due to its excellent stability and reasonable accuracy.

math.NA↗

arXiv2023

Investigating the effect of turbulence on hemolysis through cell-resolved fluid-structure interaction simulations

Existing hemolysis algorithms are often constructed for laminar flows that expose red blood cells to a constant rate of shear. It remains an open question whether such models are applicable to turbulent flows, where there is a significant variation in shear rate along cell trajectories. To evaluate the effect of turbulence on hemolysis, we perform cell-resolved simulations of red blood cells in turbulent channel flow at $Re_τ=180$ and 360 and compare them against the results obtained from laminar flow simulations at an equivalent wall shear stress. This comparison shows that, while the laminar flow generally induces greater stretch in the cell in a time-averaged sense, cells experience an overall larger deformation in turbulence. This difference is attributed to extreme events in turbulence that occasionally create bursts of high shear conditions, which, consequently, induce a large deformation in the cells. Associating damage with the most extreme deformation regimes, we observe that, in the worst case, the turbulent flow can produce deformation in the cell that is higher than the absolute maximum value in the analogous laminar case approximately 14\% of the time. Additionally, the $Re_τ=180$ universally induced greater deformation in the cells than the $Re_τ= 360$ case, suggesting that increasing the range of scales in the flow does not necessarily yield greater deformation when all other parameters are kept constant. A strong direct correlation ($R>0.8$) between shear rate and deformation metrics was observed in turbulence. The correlation against $Q$-criterion is inverse and weaker ($R\approx -0.26$), but once the shear contribution is subtracted, it improves in terms of areal dilatation ($R\approx -0.6$).

physics.flu-dyn↗

arXiv2023

A time-consistent stabilized finite element method for fluids with applications to hemodynamics

Several finite element methods for simulating incompressible flows rely on the streamline upwind Petrov-Galerkin stabilization (SUPG) term, which is weighted by tau_SUPG. The conventional formulation of tau_SUPG includes a constant that depends on the time step size, producing an overall method that becomes exceedingly less accurate as the time step size approaches zero. In practice, such method inconsistency introduces significant error in the solution, especially in cardiovascular simulations, where small time step sizes may be required. To overcome this issue, we propose a consistent method that is based on a new definition of tau_SUPG. This method, which can be easily implemented on top of an existing streamline upwind Petrov-Galerkin and pressure stabilizing Petrov-Galerkin method, involves the replacement of the time step size in tau_SUPG with a physical time scale. This time scale is calculated in a simple operation once every time step for the entire computational domain from the ratio of the L2-norm of the acceleration and the velocity. The proposed method is compared against the conventional method using four cases: a steady pipe flow, a blood flow through vascular anatomy, an external flow over a square obstacle, and a fluid-structure interaction case. These numerical experiments show that the proposed formulation eliminates the inconsistency issue associated with the conventional formulation in all cases. While the proposed method is slightly more costly than the conventional method, it significantly reduces the error, particularly at small time step sizes. For the pipe flow where an exact solution is available, we show the conventional method can over-predict the pressure drop by a factor of three. This large error is almost completely eliminated by the proposed formulation, dropping to approximately 1% for all time step sizes and Reynolds numbers considered.

physics.flu-dyn↗

arXiv2023

Analysis of the suitability of an effective viscosity to represent interactions between red blood cells

Many methods to computationally predict red blood cell damage have been introduced, and among these are Lagrangian methods which track the cells along their pathlines. Such methods typically do not explicitly include cell-cell interactions. Due to the high volume fraction of red blood cells in blood, these interactions could impact cell mechanics and thus, the amount of damage caused by the flow. To investigate this question, cell-resolved simulations of red blood cells in shear flow were performed for multiple interacting cells, as well as for single cells in unbounded flow at an effective viscosity. Simulations run without adjusting the bulk viscosity produced larger errors unilaterally and were not considered further for comparison. We show that a periodic box containing at least 8 cells and a spherical harmonic of degree larger than 10 are necessary to produce converged higher-order statistics. The maximum difference between the single-cell and multiple-cell cases in terms of peak strain was 3.7%. To achieve this agreement, one must use the whole blood viscosity and average over multiple cell orientations when adopting a single-cell simulation approach. There were some differences between the two models in terms of average strain (maximum difference of 13%). However, given the accuracy of the single-cell approach in predicting the maximum strain, which is useful in hemolysis prediction, and its computational cost that is orders of magnitude less than the multiple-cell approach, one may use it as an affordable cell-resolved approach for hemolysis prediction.

physics.flu-dyn↗

arXiv2022

A stabilized formulation for the solution of the incompressible unsteady Stokes equations in the frequency domain

A stabilized finite element method is introduced for the simulation of time-periodic creeping flows, such as those found in the cardiorespiratory systems. The new technique, which is formulated in the frequency rather than time domain, strictly uses real arithmetics and permits the use of similar shape functions for pressure and velocity for ease of implementation. It involves the addition of the Laplacian of pressure to the continuity equation with a complex-valued stabilization parameter that is derived systematically from the momentum equation. The numerical experiments show the excellent accuracy and robustness of the proposed method in simulating flows in complex and canonical geometries for a wide range of conditions. The present method significantly outperforms a traditional solver in terms of both computational cost and scalability, which lowers the overall solution turnover time by several orders of magnitude.

math.NA↗

arXiv2021

A scalable spectral Stokes solver for simulation of time-periodic flows in complex geometries

Simulation of unsteady creeping flows in complex geometries has traditionally required the use of a time-stepping procedure, which is typically costly and unscalable. To reduce the cost and allow for computations at much larger scales, we propose an alternative approach that is formulated based on the unsteady Stokes equation expressed in the time-spectral domain. This transformation results in a boundary value problem with an imaginary source term proportional to the computed mode that is discretized and solved in a complex-valued finite element solver using Bubnov-Galerkin formulation. This transformed spatio-spectral formulation presents several advantages over the traditional spatio-temporal techniques. Firstly, for cases with boundary conditions varying smoothly in time, it provides a significant saving in computational cost as it can resolve time-variation of the solution using a few modes rather than thousands of time steps. Secondly, in contrast to the traditional time integration scheme with a finite order of accuracy, this method exhibits a super convergence behavior versus the number of computed modes. Thirdly, in contrast to the stabilized finite element methods for fluid, no stabilization term is employed in our formulation, producing a solution that is consistent and more accurate. Fourthly, the proposed approach is embarrassingly parallelizable owing to the independence of the solution modes, thus enabling scalable calculations at a much larger number of processors. The comparison of the proposed technique against a standard stabilized finite element solver is performed using two- and three-dimensional canonical and complex geometries. The results show that the proposed method can produce more accurate results at 1% to 11% of the cost of the standard technique for the studied cases.

cs.CE↗

arXiv2020

A general velocity correction scheme for two-way coupled point-particle simulations

The accuracy of Euler-Lagrange point-particle models employed in particle-laden fluid flow simulations depends on accurate estimation of the particle force through closure models. Typical force closure models require computation of the slip velocity at the particle location, which in turn requires accurate estimation of the undisturbed fluid velocity. However, when the fluid and particle phases are two-way coupled the fluid velocity field is disturbed by the presence of the particle. A common practice is to use the disturbed velocity to compute the particle force which can result in errors as much as 100% in predicting the particle dynamics. In this work, a general velocity correction scheme is developed that facilitates accurate estimation of the undisturbed fluid velocity in particle-laden fluid flows with and without no-slip walls. The model can handle particles of different size, arbitrary interpolation functions, anisotropic grids with large aspect ratios, and wall-bounded flows. The present correction scheme is motivated by the recent work of Esmaily & Horwitz (JCP, 2018) on unbounded particle-laden flows. Modifications necessary for wall-bounded flows are developed such that the undisturbed fluid velocity at any wall distance is accurately recovered, asymptotically approaching the unbounded scheme for particles far away from walls. A detailed series of verification tests were conducted on settling velocity of a particle in parallel and perpendicular motions to a no-slip wall. A range of flow parameters and grid configurations; involving anisotropic grids with aspect ratios typically encountered in particle-laden turbulent channel flows, were considered in detail. When the wall effects are accounted for, the present correction scheme reduces the errors in predicting the near-wall particle motion by one order of magnitude smaller values compared to the unbounded correction schemes.

physics.flu-dyn↗

arXiv2017

A correction scheme for two-way coupled point-particle simulations on anisotropic grids

The accuracy of Lagrangian point-particle models for simulation of particle-laden flows may degrade when the particle and fluid momentum equations are two-way coupled. In these cases the fluid velocity at the location of the particle, which is often used as an estimation of the undisturbed velocity, is altered by the presence of the particle, modifying the slip velocity and producing an erroneous prediction of coupling forces between fluid and particle. In this article, we propose a correction scheme to eliminate this error and predict the undisturbed fluid velocity accurately. Conceptually, in this method, the computation cell is treated as a solid object immersed in the fluid that is subjected to the two-way coupling force and dragged at a velocity that is identical to the disturbance created by the particle. The proposed scheme is generic as it can be applied to unstructured grids with arbitrary geometry and particles that have different size and density. At its crudest form for isotropic grids, the present correction scheme reduces to dividing the Stokes drag by $1 - 0.75Λ$, where $Λ$ is the ratio of the particle diameter to the grid size. The accuracy of the proposed scheme is evaluated by comparing the computed settling velocity of individual and pair of particles under gravity on anisotropic rectilinear grids against analytical solutions. This comparison shows up to two orders of magnitude reduction in error in cases where the particle is up to 5 times larger than the grid that may have an aspect ratio of over 10. Furthermore, a comparison against the particle-resolved simulation of decaying turbulence demonstrates the excellent accuracy of the proposed scheme.

physics.flu-dyn↗