arXiv subjects

Mahdi Orooji

Publications and source records attributed to Mahdi Orooji.

16 recordsLinked to original sources

arXiv2019

Drug Release Management for Dynamic TDMA-Based Molecular Communication

In this paper, we design a drug release mechanism for dynamic time division multiple access (TDMA)-based molecular communication via diffusion (MCvD). In the proposed scheme, the communication frame is divided into several time slots over each of which a transmitter nanomachine is scheduled to convey its information by releasing the molecules into the medium. To optimize the number of released molecules and the time duration of each time slot (symbol duration), we formulate a multi-objective optimization problem whose objective functions are the bit error rate (BER) of each transmitter nanomachine. Based on the number of released molecules and symbol durations, we consider four cases, namely: "static-time static-number of molecules" (STSN), "static-time dynamic-number of molecules" (STDN), "dynamic-time static-number of molecules" (DTSN), and "dynamic-time dynamic-number of molecules" (DTDN). We consider three types of medium in which the molecules are propagated, namely: "mild diffusive environment" (MDE), "moderate diffusive environment" (MODE), and "severe diffusive environment" (SDE). For the channel model, we consider a 3-dimensional (3D) diffusive environment, such as blood, with drift in three directions. Simulation results show that the STSN approach is the least complex one with BER around $\text{10}^{\text{-2}}$, but, the DTDN is the most complex scenario with the BER around $\text{10}^{\text{-8}}$.

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arXiv2019

Multiple-type Transmission Multiple-type Reception Framework on Molecular Communication

In this paper, we propose a new Multiple-Input Multiple-Output (MIMO) Molecular Communication (MC) system where multiple types of molecules are utilized for transmission and reception of information. We call the proposed framework as Multiple-type Transmission and Multiple-type Reception (MTMR). We also obtain the bit error rate (BER) of the system and an optimization problem is formulated to minimize BER by optimizing the drug dosage for designing drug release mechanism. As numerical analysis shows, the BER of MIMO-MTMR in MC is minimized to $\text{3.7}\times\text{10}^{\text{-3}}$ by considering the budget of molecules as 10000. Furthermore, MIMO-MTMR outperforms Single-type Transmission Single-type Reception MIMO from the BER performance point of view approximately 54% for time slot 10s.

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arXiv2019

End-to-End Performance Optimization in Hybrid Molecular and Electromagnetic Communications

Telemedicine refers to the use of information and communication technology to assist with medical information and services. In health care applications, high reliable communication links between the health care provider and the desired destination in the human body play a central role in designing end-to-end (E2E) telemedicine system. In the advanced health care applications, $\text{e.g.}$ drug delivery, molecular communication becomes a major building block in bio-nano-medical applications. In this paper, an E2E communication link consisting of the electromagnetic and the molecular link is investigated. This paradigm is crucial when the body is a part of the communication system. Based on the quality of service (QoS) metrics, we present a closed-form expression for the E2E BER of the combination of molecular and wireless electromagnetic communications. \textcolor{black}{ Next, we formulate an optimization problem with the aim of minimizing the E2E BER of the system to achieve the optimal symbol duration for EC and DMC regarding the imposing delivery time from telemedicine services.} The proposed problem is solved by an iterative algorithm based on the bisection method. Also, we study the impact of the system parameters, including drift velocity, detection threshold at the receiver in molecular communication, on the performance of the system. Numerical results show that the proposed method obtains the minimum E2E bit error probability by selecting an appropriate symbol duration of electromagnetic and molecular communications.

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arXiv2019

Non-Uniform BCSK Modulation in Nutrient-Limited Relay-Assisted Molecular Communication System: Optimization and Performance Evaluation

In this paper, a novel non-uniform Binary Concentration Shift Keying (BCSK) modulation in the course of molecular communication is introduced. We consider the nutrient limiting as the main reason for avoiding the nanotransmitters to release huge number of molecules at once. The solution of this problem is in the utilization of the BCSK modulation. In this scheme, nanotransmitter releases the information molecules non-uniformly during the time slot. The 3-dimensional diffusion channel with 3-dimensional drift is considered in this paper. To boost the bit error rate (BER) performance, we consider a relay-assisted molecular communication via diffusion. Our computations demonstrate how the pulse shape of BCSK modulation affects the BER, and we also derive the energy consumption of non-uniform BCSK in the closed-form expression. We study the parameters that can affect the BER performance, in particular the distance between the nanotransmitter and the nanoreceiver, the drift velocity of the medium, and the symbol duration. Furthermore, we propose an optimization problem that is designed to find the optimal symbol duration value that maximizes the number of successful received bits. The proposed algorithm to solve the optimization problem is based on the bisection method. The analytical results show that non-uniform BCSK modulation outperforms uniform BCSK modulation in BER performance, when the aggregate energy is fixed.

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arXiv2018

Eigenspace-Based Minimum Variance Combined with Delay Multiply and Sum Beamformer: Application to Linear-Array Photoacoustic Imaging

In Photoacoustic imaging, Delay-and-Sum (DAS) algorithm is the most commonly used beamformer. However, it leads to a low resolution and high level of sidelobes. Delay-Multiply-and-Sum (DMAS) was introduced to provide lower sidelobes compared to DAS. In this paper, to improve the resolution and sidelobes of DMAS, a novel beamformer is introduced using Eigenspace-Based Minimum Variance (EIBMV) method combined with DMAS, namely EIBMV-DMAS. It is shown that expanding the DMAS algebra leads to several terms which can be interpreted as DAS. Using the EIBMV adaptive beamforming instead of the existing DAS (inside the DMAS algebra expansion) is proposed to improve the image quality. EIBMV-DMAS is evaluated numerically and experimentally. It is shown that EIBMV-DMAS outperforms DAS, DMAS and EIBMV in terms of resolution and sidelobes. In particular, at the depth of 11 mm of the experimental images, EIBMV-DMAS results in about 113 dB and 50 dB sidelobe reduction, compared to DMAS and EIBMV, respectively. At the depth of 7 mm, for the experimental images, the quantitative results indicate that EIBMV-DMAS leads to improvement in Signal-to-Noise Ratio (SNR) of about 75% and 34%, compared to DMAS and EIBMV, respectively.

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arXiv2018

Model-Based Photoacoustic Image Reconstruction using Compressed Sensing and Smoothed L0 Norm

Photoacoustic imaging (PAI) is a novel medical imaging modality that uses the advantages of the spatial resolution of ultrasound imaging and the high contrast of pure optical imaging. Analytical algorithms are usually employed to reconstruct the photoacoustic (PA) images as a result of their simple implementation. However, they provide a low accurate image. Model-based (MB) algorithms are used to improve the image quality and accuracy while a large number of transducers and data acquisition are needed. In this paper, we have combined the theory of compressed sensing (CS) with MB algorithms to reduce the number of transducer. Smoothed version of L0-norm (SL0) was proposed as the reconstruction method, and it was compared with simple iterative reconstruction (IR) and basis pursuit. The results show that S$\ell_0$ provides a higher image quality in comparison with other methods while a low number of transducers were. Quantitative comparison demonstrates that, at the same condition, the SL0 leads to a peak-signal-to-noise ratio for about two times of the basis pursuit.

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arXiv2018

Three-Dimensional Photoacoustic Tomography using Delay Multiply and Sum Beamforming Algorithm

Photoacoustic imaging (PAI), is a promising medical imaging technique that provides the high contrast of the optical imaging and the resolution of ultrasound (US) imaging. Among all the methods, Three-dimensional (3D) PAI provides a high resolution and accuracy. One of the most common algorithms for 3D PA image reconstruction is delay-and-sum (DAS). However, the quality of the reconstructed image obtained from this algorithm is not satisfying, having high level of sidelobes and a wide mainlobe. In this paper, delay-multiply-and-sum (DMAS) algorithm is suggested to overcome these limitations in 3D PAI. It is shown that DMAS algorithm is an appropriate reconstruction technique for 3D PAI and the reconstructed images using this algorithm are improved in the terms of the width of mainlobe and sidelobes, compared to DAS. Also, the quantitative results show that DMAS improves signal-to-noise ratio (SNR) and full-width-half-maximum (FWHM) for about 25 dB and 0.2 mm, respectively, compared to DAS.

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arXiv2018

Double Minimum Variance Beamforming Method to Enhance Photoacoustic Imaging

One of the common algorithms used to reconstruct photoacoustic (PA) images is the non-adaptive Delay-and-Sum (DAS) beamformer. However, the quality of the reconstructed PA images obtained by DAS is not satisfying due to its high level of sidelobes and wide mainlobe. In contrast, adaptive beamformers, such as minimum variance (MV), result in an improved image compared to DAS. In this paper, a novel beamforming method, called Double MV (D-MV) is proposed to enhance the image quality compared to the MV. It is shown that there is a summation procedure between the weighted subarrays in the output of the MV beamformer. This summation can be interpreted as the non-adaptive DAS beamformer. It is proposed to replace the existing DAS with the MV algorithm to reduce the contribution of the off-axis signals caused by the DAS beamformer between the weighted subarrays. The numerical results show that the proposed technique improves the full-width-half-maximum (FWHM) and signal-to-noise ratio (SNR) for about 28.83 μm and 4.8 dB in average, respectively, compared to MV beamformer. Also, quantitative evaluation of the experimental results indicates that the proposed D-MV leads to 0.15 mm and 1.96 dB improvement in FWHM and SNR, in comparison with MV beamformer.

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arXiv2018

Photoacoustic Image Formation Based on Sparse Regularization of Minimum Variance Beamformer

Delay-and-Sum (DAS) is the most common algorithm used in photoacoustic (PA) image formation. However, this algorithm results in a reconstructed image with a wide mainlobe and high level of sidelobes. Minimum variance (MV), as an adaptive beamformer, overcomes these limitations and improves the image resolution and contrast. In this paper, a novel algorithm, named modified-sparse-MV (MS-MV) is proposed in which a L1-norm constraint is added to the MV minimization problem after some modifications, in order to suppress the sidelobes more efficiently, compared to MV. The added constraint can be interpreted as the sparsity of the output of the MV beamformed signals. Since the final minimization problem is convex, it can be solved efficiently using a simple iterative algorithm. The numerical results show that the proposed method, MS-MV beamformer, improves the signal-to-noise (SNR) about 19.48 dB, in average, compared to MV. Also, the experimental results, using a wire-target phantom, show that MS-MV leads to SNR improvement of about 2.64 dB in comparison with the MV.

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arXiv2018

Linear-Array Photoacoustic Imaging Using Minimum Variance-Based Delay Multiply and Sum Adaptive Beamforming Algorithm

In Photoacoustic imaging (PA), Delay-and-Sum (DAS) beamformer is a common beamforming algorithm having a simple implementation. However, it results in a poor resolution and high sidelobes. To address these challenges, a new algorithm namely Delay-Multiply-and-Sum (DMAS) was introduced having lower sidelobes compared to DAS. To improve the resolution of DMAS, a novel beamformer is introduced using Minimum Variance (MV) adaptive beamforming combined with DMAS, so-called Minimum Variance-Based DMAS (MVB-DMAS). It is shown that expanding the DMAS equation results in multiple terms representing a DAS algebra. It is proposed to use the MV adaptive beamformer instead of the existing DAS. MVB-DMAS is evaluated numerically and experimentally. In particular, at the depth of 45 mm MVB-DMAS results in about 31 dB, 18 dB and 8 dB sidelobes reduction compared to DAS, MV and DMAS, respectively. The quantitative results of the simulations show that MVB-DMAS leads to improvement in full-width-half-maximum about 96 %, 94 % and 45 % and signal-to-noise ratio about 89 %, 15 % and 35 % compared to DAS, DMAS, MV, respectively. In particular, at the depth of 33 mm of the experimental images, MVB-DMAS results in about 20 dB sidelobes reduction in comparison with other beamformers.

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arXiv2018

Double-Stage Delay Multiply and Sum Beamforming Algorithm: Application to Linear-Array Photoacoustic Imaging

Photoacoustic imaging (PAI) is an emerging medical imaging modality capable of providing high spatial resolution of Ultrasound (US) imaging and high contrast of optical imaging. Delay-and-Sum (DAS) is the most common beamforming algorithm in PAI. However, using DAS beamformer leads to low resolution images and considerable contribution of off-axis signals. A new paradigm namely Delay-Multiply-and-Sum (DMAS), which was originally used as a reconstruction algorithm in confocal microwave imaging, was introduced to overcome the challenges in DAS. DMAS was used in PAI systems and it was shown that this algorithm results in resolution improvement and sidelobe degrading. However, DMAS is still sensitive to high levels of noise, and resolution improvement is not satisfying. Here, we propose a novel algorithm based on DAS algebra inside DMAS formula expansion, Double Stage DMAS (DS-DMAS), which improves the image resolution and levels of sidelobe, and is much less sensitive to high level of noise compared to DMAS. The performance of DS-DMAS algorithm is evaluated numerically and experimentally. The resulted images are evaluated qualitatively and quantitatively using established quality metrics including signal-to-noise ratio (SNR), full-width-half-maximum (FWHM) and contrast ratio (CR). It is shown that DS-DMAS outperforms DAS and DMAS at the expense of higher computational load. DS-DMAS reduces the lateral valley for about 15 dB and improves the SNR and FWHM better than 13% and 30%, respectively. Moreover, the levels of sidelobe are reduced for about 10 dB in comparison with those in DMAS.

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arXiv2018

Double Stage Delay Multiply and Sum Beamforming Algorithm Applied to Ultrasound Medical Imaging

In Ultrasound (US) imaging, Delay and Sum (DAS) is the most common beamformer, but it leads to low quality images. Delay Multiply and Sum (DMAS) was introduced to address this problem. However, the reconstructed images using DMAS still suffer from level of sidelobes and low noise suppression. In this paper, a novel beamforming algorithm is introduced based on the expansion of DMAS formula. It is shown that there is a DAS algebra inside the expansion, and it is proposed to use DMAS instead of the DAS algebra. The introduced method, namely Double Stage DMAS (DS-DMAS), is evaluated numerically and experimentally. The quantitative results indicate that DS-DMAS results in about 25% lower level of sidelobes compared to DMAS. Moreover, the introduced method leads to 23%, 22% and 43% improvement in Signal-to-Noise Ratio, Full-Width-Half-Maximum and Contrast Ratio, respectively, in comparison with DMAS beamformer.

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arXiv2018

Image Enhancement and Noise Reduction Using Modified Delay-Multiply-and-Sum Beamformer: Application to Medical Photoacoustic Imaging

Photoacoustic imaging (PAI) is an emerging biomedical imaging modality capable of providing both high contrast and high resolution of optical and UltraSound (US) imaging. When a short duration laser pulse illuminates the tissue as a target of imaging, tissue induces US waves and detected waves can be used to reconstruct optical absorption distribution. Since receiving part of PA consists of US waves, a large number of beamforming algorithms in US imaging can be applied on PA imaging. Delay-and-Sum (DAS) is the most common beamforming algorithm in US imaging. However, make use of DAS beamformer leads to low resolution images and large scale of off-axis signals contribution. To address these problems a new paradigm namely Delay-Multiply-and-Sum (DMAS), which was used as a reconstruction algorithm in confocal microwave imaging for breast cancer detection, was introduced for US imaging. Consequently, DMAS was used in PA imaging systems and it was shown this algorithm results in resolution enhancement and sidelobe degrading. However, in presence of high level of noise the reconstructed image still suffers from high contribution of noise. In this paper, a modified version of DMAS beamforming algorithm is proposed based on DAS inside DMAS formula expansion. The quantitative and qualitative results show that proposed method results in more noise reduction and resolution enhancement in expense of contrast degrading. For the simulation, two-point target, along with lateral variation in two depths of imaging are employed and it is evaluated under high level of noise in imaging medium. Proposed algorithm in compare to DMAS, results in reduction of lateral valley for about 19 dB followed by more distinguished two-point target. Moreover, levels of sidelobe are reduced for about 25 dB.

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arXiv2018

Medical Photoacoustic Beamforming Using Minimum Variance-Based Delay Multiply and Sum

Delay-and-Sum (DAS) beamformer is the most common beamforming algorithm in Photoacoustic imaging (PAI) due to its simple implementation and real time imaging. However, it provides poor resolution and high levels of sidelobe. A new algorithm named Delay-Multiply-and-Sum (DMAS) was introduced. Using DMAS leads to lower levels of sidelobe compared to DAS, but resolution is not satisfying yet. In this paper, a novel beamformer is introduced based on the combination of Minimum Variance (MV) adaptive beamforming and DMAS, so-called Minimum Variance-Based DMAS (MVB-DMAS). It is shown that expanding the DMAS equation leads to some terms which contain a DAS equation. It is proposed to use MV adaptive beamformer instead of existing DAS inside the DMAS algebra expansion. MVB-DMAS is evaluated numerically compared to DAS, DMAS and MV and Signal-to-noise ratio (SNR) metric is presented. It is shown that MVB-DMAS leads to higher image quality and SNR for about 13 dB, 3 dB and 2 dB in comparison with DAS, DMAS and MV, respectively.

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arXiv2017

Eigenspace-Based Minimum Variance Adaptive Beamformer Combined with Delay Multiply and Sum: Experimental Study

Delay and sum (DAS) is the most common beamforming algorithm in linear-array photoacoustic imaging (PAI) as a result of its simple implementation. However, it leads to a low resolution and high sidelobes. Delay multiply and sum (DMAS) was used to address the incapabilities of DAS, providing a higher image quality. However, the resolution improvement is not well enough compared to eigenspace-based minimum variance (EIBMV). In this paper, the EIBMV beamformer has been combined with DMAS algebra, called EIBMV-DMAS, using the expansion of DMAS algorithm. The proposed method is used as the reconstruction algorithm in linear-array PAI. EIBMV-DMAS is experimentally evaluated where the quantitative and qualitative results show that it outperforms DAS, DMAS and EIBMV. The proposed method degrades the sidelobes for about 365 %, 221 % and 40 %, compared to DAS, DMAS and EIBMV, respectively. Moreover, EIBMV-DMAS improves the SNR about 158 %, 63 % and 20 %, respectively.

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arXiv2017

Photoacoustic Imaging using Combination of Eigenspace-Based Minimum Variance and Delay-Multiply-and-Sum Beamformers: Simulation Study

Delay and Sum (DAS), as the most common beamforming algorithm in Photoacoustic Imaging (PAI), having a simple implementation, results in a low-quality image. Delay Multiply and Sum (DMAS) was introduced to improve the quality of the reconstructed images using DAS. However, the resolution improvement is now well enough compared to high resolution adaptive reconstruction methods such as Eigenspace- Based Minimum Variance (EIBMV). We proposed to integrate the EIBMV inside the DMAS formula by replacing the existing DAS algebra inside the expansion of DMAS, called EIBMV-DMAS. It is shown that EIBMV-DMAS outperforms DMAS in the terms of levels of sidelobes and width of mainlobe significantly. For instance, at the depth of 35 mm, EIBMV-DMAS outperforms DMAS and EIBMV in the term of sidelobes for about 108 dB, 98 dB and 44 dB compared to DAS, DMAS, and EIBMV, respectively. The quantitative comparison has been conducted using Full-Width-Half-Maximum (FWHM) and Signal-to-Noise Ratio (SNR), and it was shown that EIBMV-DMAS reduces the FWHM about 1.65 mm and improves the SNR about 15 dB, compared to DMAS.

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