arXiv subjects

Makito Miyazaki

Publications and source records attributed to Makito Miyazaki.

3 recordsLinked to original sources

arXiv2025

Myosin-driven advection and actin reorganization control the geometry of confined actomyosin gel

Harnessing nanoscale motor proteins to actively control material shape is a promising strategy in nanotechnology and material science. One notable system is the actomyosin network, composed of actin filaments and myosin motor proteins, providing a natural platform for constructing contractile, shape-adaptive materials. While the role of actomyosin in shaping cells has been extensively studied, the reverse question - how boundary shape affects the actomyosin system - remains poorly understood. Here, we present a microfabricated system that reveals how geometrical confinement directs the organization of actomyosin networks within microwells. By combining experimental and numerical analysis, we show that the asymmetric shape of the microwells is transferred to contracted actomyosin gels via myosin-driven actin flow. Furthermore, tuning myosin contractility and actin polymerization rate allows control over the size and shape of actomyosin gels. Our findings provide a bottom-up framework for integrating molecular motors and cytoskeletons into confined architectures to create responsive biomaterials.

cond-mat.soft↗

arXiv2022

Analysis of Brownian Motion by Elementary School Students

To stimulate the intellectual curiosity of elementary school students, we conducted a workshop in distance education aimed at exploring the microscopic world inside a cell. In this workshop, elementary school students motivated to learn more on the subject of science analyzed movies of the Brownian motion of micrometer-sized particles suspended in water, using an open-source software, Tracker. These students then performed two-dimensional(2D)-random walk experiments using a dice game sheet to examine the physical mechanism of Brownian motion. After the workshop, we conducted a questionnaire-based survey. Many participants answered that the contents were difficult but interesting, suggesting that our workshop was very efficient to stimulate the curiosity of motivated students.

physics.ed-ph↗

arXiv2011

Go-and-Back method: Effective estimation of the hidden motion of proteins from single-molecule time series

We present an effective method for estimating the motion of proteins from the motion of attached probe particles in single-molecule experiments. The framework naturally incorporates Langevin dynamics to compute the most probable trajectory of the protein. By using a perturbation expansion technique, we achieve computational costs more than four orders of magnitude smaller than the conventional gradient descent method without loss of simplicity in the computation algorithm. We present illustrative applications of the method using simple models of single-molecule experiments and confirm that the proposed method yields reasonable and stable estimates of the hidden motion in a highly efficient manner.

physics.chem-ph↗