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Marc Joliot

Publications and source records attributed to Marc Joliot.

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Standardized Evaluation of Automatic Methods for Perivascular Spaces Segmentation in MRI -- MICCAI 2024 Challenge Results

Perivascular spaces (PVS), when abnormally enlarged and visible in magnetic resonance imaging (MRI) structural sequences, are important imaging markers of cerebral small vessel disease and potential indicators of neurodegenerative conditions. Despite their clinical significance, automatic enlarged PVS (EPVS) segmentation remains challenging due to their small size, variable morphology, similarity with other pathological features, and limited annotated datasets. This paper presents the EPVS Challenge organized at MICCAI 2024, which aims to advance the development of automated algorithms for EPVS segmentation across multi-site data. We provided a diverse dataset comprising 100 training, 50 validation, and 50 testing scans collected from multiple international sites (UK, Singapore, and China) with varying MRI protocols and demographics. All annotations followed the STRIVE protocol to ensure standardized ground truth and covered the full brain parenchyma. Seven teams completed the full challenge, implementing various deep learning approaches primarily based on U-Net architectures with innovations in multi-modal processing, ensemble strategies, and transformer-based components. Performance was evaluated using dice similarity coefficient, absolute volume difference, recall, and precision metrics. The winning method employed MedNeXt architecture with a dual 2D/3D strategy for handling varying slice thicknesses. The top solutions showed relatively good performance on test data from seen datasets, but significant degradation of performance was observed on the previously unseen Shanghai cohort, highlighting cross-site generalization challenges due to domain shift. This challenge establishes an important benchmark for EPVS segmentation methods and underscores the need for the continued development of robust algorithms that can generalize in diverse clinical settings.

q-bio.QM

Study of inter-individual variability of three-dimensional data table: detection of unstable variables and samples

We propose two methodologies in order to better understand the inter-individual variability of resting-state functional Magnetic Resonance Imaging (fMRI) brain data. The aim of the study was to quantify whether the average dendrogram is representative of the initial population and to identify its possible sources of instability. The average dendrogram is based on the Pearson correlation between resting-state networks. The first method identifies networks that can lead to unstable partitions of the average dendrogram. The second method identified homogeneous sub-samples of participants for whom their associated average dendrograms were more stable than that of the whole sample. The two suggested methods have shown significant quantifiable behavioral data results with regards to detecting an unstable network or presence of subpopulations when the noise level does not conceal the structure of the data. These two methods have been successfully applied to establish a cerebral atlas for late adulthood. The first method made it clear that there was no unstable network among the atlas networks. The second method highlighted the presence of two distinct sub-populations with different age-related brain organizations.

physics.med-ph