arXiv subjects

Marcel Dominik Nickel

Publications and source records attributed to Marcel Dominik Nickel.

4 recordsLinked to original sources

arXiv2025

Zero-shot self-supervised learning of single breath-hold magnetic resonance cholangiopancreatography (MRCP) reconstruction

To investigate the feasibility of zero-shot self-supervised learning reconstruction for reducing breath-hold times in magnetic resonance cholangiopancreatography (MRCP). Breath-hold MRCP was acquired from 11 healthy volunteers on 3T scanners using an incoherent k-space sampling pattern, leading to 14-second acquisition time and an acceleration factor of R=25. Zero-shot reconstruction was compared with parallel imaging of respiratory-triggered MRCP (338s, R=3) and compressed sensing reconstruction. For two volunteers, breath-hold scans (40s, R=6) were additionally acquired and retrospectively undersampled to R=25 to compute peak signal-to-noise ratio (PSNR). To address long zero-shot training time, the n+m full stages of the zero-shot learning were divided into two parts to reduce backpropagation depth during training: 1) n frozen stages initialized with n-stage pretrained network and 2) m trainable stages initialized either randomly or m-stage pretrained network. Efficiency of our approach was assessed by varying initialization strategies and the number of trainable stages using the retrospectively undersampled data. Zero-shot reconstruction significantly improved visual image quality over compressed sensing, particularly in SNR and ductal delineation, and achieved image quality comparable to that of successful respiratory-triggered acquisitions with regular breathing patterns. Improved initializations enhanced PSNR and reduced reconstruction time. Adjusting frozen/trainable configurations demonstrated that PSNR decreased only slightly from 38.25 dB (0/13) to 37.67 dB (12/1), while training time decreased up to 6.7-fold. Zero-shot learning delivers high-fidelity MRCP reconstructions with reduced breath-hold times, and the proposed partially trainable approach offers a practical solution for translation into time-constrained clinical workflows.

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arXiv2025

Deep Learning-based Accelerated MR Cholangiopancreatography without Fully-sampled Data

The purpose of this study was to accelerate MR cholangiopancreatography (MRCP) acquisitions using deep learning-based (DL) reconstruction at 3T and 0.55T. A total of 35 healthy volunteers underwent conventional two-fold accelerated MRCP scans at field strengths of 3T and 0.55T. We trained DL reconstructions using two different training strategies, supervised (SV) and self-supervised (SSV), with retrospectively six-fold undersampled data obtained at 3T. We then evaluated the DL reconstructions against standard techniques, parallel imaging (PI) and compressed sensing (CS), focusing on peak signal-to-noise ratio (PSNR) and structural similarity (SSIM) as metrics. We also tested DL reconstructions with prospectively accelerated acquisitions and evaluated their robustness when changing fields strengths from 3T to 0.55T. DL reconstructions demonstrated a reduction in average acquisition time from 599/542 to 255/180 seconds for MRCP at 3T/0.55T. In both retrospective and prospective undersampling, PSNR and SSIM of DL reconstructions were higher than those of PI and CS. At the same time, DL reconstructions preserved the image quality of undersampled data, including sharpness and the visibility of hepatobiliary ducts. In addition, both DL approaches produced high-quality reconstructions at 0.55T. In summary, DL reconstructions trained for highly accelerated MRCP enabled a reduction in acquisition time by a factor of 2.4/3.0 at 3T/0.55T while maintaining the image quality of conventional acquisitions.

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arXiv2022

Deep learning-guided weighted averaging for signal dropout compensation in diffusion-weighted imaging of the liver

Purpose: To develop an algorithm for the retrospective correction of signal dropout artifacts in abdominal diffusion-weighted imaging (DWI) resulting from cardiac motion. Methods: Given a set of image repetitions for a slice, a locally adaptive weighted averaging is proposed which aims to suppress the contribution of image regions affected by signal dropouts. Corresponding weight maps were estimated by a sliding-window algorithm which analyzed signal deviations from a patch-wise reference. In order to ensure the computation of a robust reference, repetitions were filtered by a classifier that was trained to detect images corrupted by signal dropouts. The proposed method, termed Deep Learning-guided Adaptive Weighted Averaging (DLAWA), was evaluated in terms of dropout suppression capability, bias reduction in the Apparent Diffusion Coefficient (ADC) and noise characteristics. Results: In the case of uniform averaging, motion-related dropouts caused signal attenuation and ADC overestimation in parts of the liver with the left lobe being affected particularly. Both effects could be substantially mitigated by DLAWA while preventing global penalties with respect to signal-to-noise ratio (SNR) due to local signal suppression. Performing evaluations on patient data, the capability to recover lesions concealed by signal dropouts was demonstrated as well. Further, DLAWA allowed for transparent control of the trade-off between SNR and signal dropout suppression by means of a few hyperparameters. Conclusion: This work presents an effective and flexible method for the local compensation of signal dropouts resulting from motion and pulsation. Since DLAWA follows a retrospective approach, no changes to the acquisition are required.

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arXiv2022

Robust partial Fourier reconstruction for diffusion-weighted imaging using a recurrent convolutional neural network

Purpose: To develop an algorithm for robust partial Fourier (PF) reconstruction applicable to diffusion-weighted (DW) images with non-smooth phase variations. Methods: Based on an unrolled proximal splitting algorithm, a neural network architecture is derived which alternates between data consistency operations and regularization implemented by recurrent convolutions. In order to exploit correlations, multiple repetitions of the same slice are jointly reconstructed under consideration of permutation-equivariance. The algorithm is trained on DW liver data of 60 volunteers and evaluated on retrospectively and prospectively sub-sampled data of different anatomies and resolutions. Results: The proposed method is able to significantly outperform conventional PF techniques on retrospectively sub-sampled data in terms of quantitative measures as well as perceptual image quality. In this context, joint reconstruction of repetitions as well as the particular type of recurrent network unrolling are found to be beneficial with respect to reconstruction quality. On prospectively PF-sampled data, the proposed method enables DW imaging with higher signal without sacrificing image resolution or introducing additional artifacts. Alternatively, it can be used to counter the TE increase in acquisitions with higher resolution. Further, generalizability can be shown to prospective brain data exhibiting anatomies and contrasts not present in the training set. Conclusion: This work demonstrates that robust PF reconstruction of DW data is feasible even at strong PF factors in anatomies prone to phase variations. Since the proposed method does not rely on smoothness priors of the phase but uses learned recurrent convolutions instead, artifacts of conventional PF methods can be avoided.

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