arXiv subjects

Marcelo Pereyra

Publications and source records attributed to Marcelo Pereyra.

At least 19 recordsLinked to original sources

arXiv2026

Self-Supervised Conformal Prediction with Equivariant Bootstrapping for Image Uncertainty Quantification

Inverse problems are ubiquitous in modern scientific studies and involve recovering an underlying signal from noisy observations often transformed by a measurement operator. These problems are frequently ill-posed, particularly in imaging, leading to multiple plausible solutions and considerable uncertainty in reconstructed images. In fields like the physical and biological sciences, accurate uncertainty quantification (UQ) is critical for trustworthy scientific analyses and confident diagnoses. Current UQ methods for imaging often fall short; they can be inaccurate, or require unavailable or difficult-to-acquire ground truth data for calibration, which can introduce hidden biases due to distribution shifts between calibration and observed data. We introduce a UQ approach that leverages equivariant bootstrapping to generate heuristic coverages by exploiting data symmetries. We then refine these coverages through a conformal prediction calibration step, while crucially employing a self-supervised approach to avoid the need for ground truth calibration data. We demonstrate this method with weak lensing mass-mapping, where we aim to reconstruct the convergence field from shear measurements of distant galaxies weakly-lensed by gravitational fields. Mass-mapping in particular benefits from the self-supervised approach, as simulating calibration data is expensive and relies on specific cosmological models that could introduce biases in downstream cosmological inference tasks.

stat.ME↗

arXiv2026

Consistency Regularised Gradient Flows for Inverse Problems

Vision-Language Latent Diffusion Models (LDMs) (Rombach et al., 2022) provide powerful generative priors for inverse problems. However, existing LDM-based inverse solvers typically require a large number of neural function evaluations (NFEs) and backpropagation through large pretrained components, leading to substantial computational costs and, in some cases, degraded reconstruction quality. We propose a unified Euclidean-Wasserstein-2 gradient-flow framework that jointly performs posterior sampling and prompt optimization in the latent space through a single flow that aligns the prior and posterior with the observed data. Combined with few-step latent text-to-image models, this formulation enables low-NFE inference without backpropagation through autoencoders. Experiments across several canonical imaging inverse problems show that our method achieves state-of-the-art performance with significantly reduced computational cost.

stat.ML↗

arXiv2026

Deep unfolding of MCMC kernels: scalable, modular & explainable GANs for high-dimensional posterior sampling

Markov chain Monte Carlo (MCMC) methods are fundamental to Bayesian computation, but can be computationally intensive, especially in high-dimensional settings. Push-forward generative models, such as generative adversarial networks (GANs), variational auto-encoders and normalising flows offer a computationally efficient alternative for posterior sampling. However, push-forward models are opaque as they lack the modularity of Bayes Theorem, leading to poor generalisation with respect to changes in the likelihood function. In this work, we introduce a novel approach to GAN architecture design by applying deep unfolding to Langevin MCMC algorithms. This paradigm maps fixed-step iterative algorithms onto modular neural networks, yielding architectures that are both flexible and amenable to interpretation. Crucially, our design allows key model parameters to be specified at inference time, offering robustness to changes in the likelihood parameters. We train these unfolded samplers end-to-end using a supervised regularized Wasserstein GAN framework for posterior sampling. Through extensive Bayesian imaging experiments, we demonstrate that our proposed approach achieves high sampling accuracy and excellent computational efficiency, while retaining the physics consistency, adaptability and interpretability of classical MCMC strategies.

cs.LG↗

arXiv2025

Bayesian model selection and misspecification testing in imaging inverse problems only from noisy and partial measurements

Modern imaging techniques heavily rely on Bayesian statistical models to address difficult image reconstruction and restoration tasks. This paper addresses the objective evaluation of such models in settings where ground truth is unavailable, with a focus on model selection and misspecification diagnosis. Existing unsupervised model evaluation methods are often unsuitable for computational imaging due to their high computational cost and incompatibility with modern image priors defined implicitly via machine learning models. We herein propose a general methodology for unsupervised model selection and misspecification detection in Bayesian imaging sciences, based on a novel combination of Bayesian cross-validation and data fission, a randomized measurement splitting technique. The approach is compatible with any Bayesian imaging sampler, including diffusion and plug-and-play samplers. We demonstrate the methodology through experiments involving various scoring rules and types of model misspecification, where we achieve excellent selection and detection accuracy with a low computational cost.

eess.IV↗

arXiv2025

Normalization-equivariant Diffusion Models: Learning Posterior Samplers From Noisy And Partial Measurements

Diffusion models (DMs) have rapidly emerged as a powerful framework for image generation and restoration. However, existing DMs are primarily trained in a supervised manner by using a large corpus of clean images. This reliance on clean data poses fundamental challenges in many real-world scenarios, where acquiring noise-free data is hard or infeasible, and only noisy and potentially incomplete measurements are available. While some methods can train DMs using noisy data, they are generally effective only when the amount of noise is very mild or when some additional noise-free data is available. In addition, existing methods for training DMs from incomplete measurements require access to multiple complementary acquisition processes, an assumption that poses a significant practical limitation. Here we introduce the first approach for learning DMs for image restoration using only noisy measurement data from a single operator. As a first key contribution, we show that DMs, and more broadly minimum mean squared error denoisers, exhibit a weak form of scale equivariance linking rescaling in signal amplitude to changes in noise intensity. We then leverage this theoretical insight to develop a denoising score-matching strategy that generalizes robustly to noise levels lower than those present in the training data, thereby enabling the learning of DMs from noisy measurements. To further address the challenges of incomplete and noisy data, we integrate our method with equivariant imaging, a complementary self-supervised learning framework that exploits the inherent invariants of imaging problems, to train DMs for image restoration from single-operator measurements that are both incomplete and noisy. We validate the effectiveness of our approach through extensive experiments on image denoising, demosaicing, and inpainting, along with comparisons with the state of the art.

eess.IV↗

arXiv2025

LVTINO: LAtent Video consisTency INverse sOlver for High Definition Video Restoration

Computational imaging methods increasingly rely on powerful generative diffusion models to tackle challenging image restoration tasks. In particular, state-of-the-art zero-shot image inverse solvers leverage distilled text-to-image latent diffusion models (LDMs) to achieve unprecedented accuracy and perceptual quality with high computational efficiency. However, extending these advances to high-definition video restoration remains a significant challenge, due to the need to recover fine spatial detail while capturing subtle temporal dependencies. Consequently, methods that naively apply image-based LDM priors on a frame-by-frame basis often result in temporally inconsistent reconstructions. We address this challenge by leveraging recent advances in Video Consistency Models (VCMs), which distill video latent diffusion models into fast generators that explicitly capture temporal causality. Building on this foundation, we propose LVTINO, the first zero-shot or plug-and-play inverse solver for high definition video restoration with priors encoded by VCMs. Our conditioning mechanism bypasses the need for automatic differentiation and achieves state-of-the-art video reconstruction quality with only a few neural function evaluations, while ensuring strong measurement consistency and smooth temporal transitions across frames. Extensive experiments on a diverse set of video inverse problems show significant perceptual improvements over current state-of-the-art methods that apply image LDMs frame by frame, establishing a new benchmark in both reconstruction fidelity and computational efficiency. The code is available on GitHub.

cs.CV↗

arXiv2025

Learning few-step posterior samplers by unfolding and distillation of diffusion models

Diffusion models (DMs) have emerged as powerful image priors in Bayesian computational imaging. Two primary strategies have been proposed for leveraging DMs in this context: Plug-and-Play methods, which are zero-shot and highly flexible but rely on approximations; and specialized conditional DMs, which achieve higher accuracy and faster inference for specific tasks through supervised training. In this work, we introduce a novel framework that integrates deep unfolding and model distillation to transform a DM image prior into a few-step conditional model for posterior sampling. A central innovation of our approach is the unfolding of a Markov chain Monte Carlo (MCMC) algorithm - specifically, the recently proposed LATINO Langevin sampler (Spagnoletti et al., 2025) - representing the first known instance of deep unfolding applied to a Monte Carlo sampling scheme. We demonstrate our proposed unfolded and distilled samplers through extensive experiments and comparisons with the state of the art, where they achieve excellent accuracy and computational efficiency, while retaining the flexibility to adapt to variations in the forward model at inference time.

cs.CV↗

arXiv2025

Hypothesis Testing in Imaging Inverse Problems

This paper proposes a framework for semantic hypothesis testing tailored to imaging inverse problems. Modern imaging methods struggle to support hypothesis testing, a core component of the scientific method that is essential for the rigorous interpretation of experiments and robust interfacing with decision-making processes. There are three main reasons why image-based hypothesis testing is challenging. First, the difficulty of using a single observation to simultaneously reconstruct an image, formulate hypotheses, and quantify their statistical significance. Second, the hypotheses encountered in imaging are mostly of semantic nature, rather than quantitative statements about pixel values. Third, it is challenging to control test error probabilities because the null and alternative distributions are often unknown. Our proposed approach addresses these difficulties by leveraging concepts from self-supervised computational imaging, vision-language models, and non-parametric hypothesis testing with e-values. We demonstrate our proposed framework through numerical experiments related to image-based phenotyping, where we achieve excellent power while robustly controlling Type I errors.

stat.ML↗

arXiv2025

Efficient Bayesian Computation Using Plug-and-Play Priors for Poisson Inverse Problems

This paper studies plug-and-play (PnP) Langevin sampling strategies for Bayesian inference in low-photon Poisson imaging problems, a challenging class of problems with significant applications in astronomy, medicine, and biology. PnP Langevin sampling offers a powerful framework for Bayesian image restoration, enabling accurate point estimation as well as advanced inference tasks, including uncertainty quantification and visualization analyses, and empirical Bayesian inference for automatic model parameter tuning. Herein, we leverage and adapt recent developments in this framework to tackle challenging imaging problems involving weakly informative Poisson data. Existing PnP Langevin algorithms are not well-suited for low-photon Poisson imaging due to high solution uncertainty and poor regularity properties, such as exploding gradients and non-negativity constraints. To address these challenges, we explore two strategies for extending Langevin PnP sampling to Poisson imaging models: (i) an accelerated PnP Langevin method that incorporates boundary reflections and a Poisson likelihood approximation and (ii) a mirror sampling algorithm that leverages a Riemannian geometry to handle the constraints and the poor regularity of the likelihood without approximations. The effectiveness of these approaches is evaluated and contrasted through extensive numerical experiments and comparisons with state-of-the-art methods. The source code accompanying this paper is available at https://github.com/freyyia/pnp-langevin-poisson.

stat.CO↗

arXiv2025

LATINO-PRO: LAtent consisTency INverse sOlver with PRompt Optimization

Text-to-image latent diffusion models (LDMs) have recently emerged as powerful generative models with great potential for solving inverse problems in imaging. However, leveraging such models in a Plug & Play (PnP), zero-shot manner remains challenging because it requires identifying a suitable text prompt for the unknown image of interest. Also, existing text-to-image PnP approaches are highly computationally expensive. We herein address these challenges by proposing a novel PnP inference paradigm specifically designed for embedding generative models within stochastic inverse solvers, with special attention to Latent Consistency Models (LCMs), which distill LDMs into fast generators. We leverage our framework to propose LAtent consisTency INverse sOlver (LATINO), the first zero-shot PnP framework to solve inverse problems with priors encoded by LCMs. Our conditioning mechanism avoids automatic differentiation and reaches SOTA quality in as little as 8 neural function evaluations. As a result, LATINO delivers remarkably accurate solutions and is significantly more memory and computationally efficient than previous approaches. We then embed LATINO within an empirical Bayesian framework that automatically calibrates the text prompt from the observed measurements by marginal maximum likelihood estimation. Extensive experiments show that prompt self-calibration greatly improves estimation, allowing LATINO with PRompt Optimization to define new SOTAs in image reconstruction quality and computational efficiency. The code is available at https://latino-pro.github.io

cs.CV↗

arXiv2025

Self-supervised conformal prediction for uncertainty quantification in Poisson imaging problems

Image restoration problems are often ill-posed, leading to significant uncertainty in reconstructed images. Accurately quantifying this uncertainty is essential for the reliable interpretation of reconstructed images. However, image restoration methods often lack uncertainty quantification capabilities. Conformal prediction offers a rigorous framework to augment image restoration methods with accurate uncertainty quantification estimates, but it typically requires abundant ground truth data for calibration. This paper presents a self-supervised conformal prediction method for Poisson imaging problems which leverages Poisson Unbiased Risk Estimator to eliminate the need for ground truth data. The resulting self-calibrating conformal prediction approach is applicable to any Poisson linear imaging problem that is ill-conditioned, and is particularly effective when combined with modern self-supervised image restoration techniques trained directly on measurement data. The proposed method is demonstrated through numerical experiments on image denoising and deblurring; its performance are comparable to supervised conformal prediction methods relying on ground truth data.

cs.CV↗

arXiv2025

Self-supervised Conformal Prediction for Uncertainty Quantification in Imaging Problems

Most image restoration problems are ill-conditioned or ill-posed and hence involve significant uncertainty. Quantifying this uncertainty is crucial for reliably interpreting experimental results, particularly when reconstructed images inform critical decisions and science. However, most existing image restoration methods either fail to quantify uncertainty or provide estimates that are highly inaccurate. Conformal prediction has recently emerged as a flexible framework to equip any estimator with uncertainty quantification capabilities that, by construction, have nearly exact marginal coverage. To achieve this, conformal prediction relies on abundant ground truth data for calibration. However, in image restoration problems, reliable ground truth data is often expensive or not possible to acquire. Also, reliance on ground truth data can introduce large biases in situations of distribution shift between calibration and deployment. This paper seeks to develop a more robust approach to conformal prediction for image restoration problems by proposing a self-supervised conformal prediction method that leverages Stein's Unbiased Risk Estimator (SURE) to self-calibrate itself directly from the observed noisy measurements, bypassing the need for ground truth. The method is suitable for any linear imaging inverse problem that is ill-conditioned, and it is especially powerful when used with modern self-supervised image restoration techniques that can also be trained directly from measurement data. The proposed approach is demonstrated through numerical experiments on image denoising and deblurring, where it delivers results that are remarkably accurate and comparable to those obtained by supervised conformal prediction with ground truth data.

cs.CV↗

arXiv2024

Bayesian computation with generative diffusion models by Multilevel Monte Carlo

Generative diffusion models have recently emerged as a powerful strategy to perform stochastic sampling in Bayesian inverse problems, delivering remarkably accurate solutions for a wide range of challenging applications. However, diffusion models often require a large number of neural function evaluations per sample in order to deliver accurate posterior samples. As a result, using diffusion models as stochastic samplers for Monte Carlo integration in Bayesian computation can be highly computationally expensive, particularly in applications that require a substantial number of Monte Carlo samples for conducting uncertainty quantification analyses. This cost is especially high in large-scale inverse problems such as computational imaging, which rely on large neural networks that are expensive to evaluate. With quantitative imaging applications in mind, this paper presents a Multilevel Monte Carlo strategy that significantly reduces the cost of Bayesian computation with diffusion models. This is achieved by exploiting cost-accuracy trade-offs inherent to diffusion models to carefully couple models of different levels of accuracy in a manner that significantly reduces the overall cost of the calculation, without reducing the final accuracy. The proposed approach achieves a $4\times$-to-$8\times$ reduction in computational cost w.r.t. standard techniques across three benchmark imaging problems.

stat.CO↗

arXiv2024

Empirical Bayesian image restoration by Langevin sampling with a denoising diffusion implicit prior

Score-based diffusion methods provide a powerful strategy to solve image restoration tasks by flexibly combining a pre-trained foundational prior model with a likelihood function specified during test time. Such methods are predominantly derived from two stochastic processes: reversing Ornstein-Uhlenbeck, which underpins the celebrated denoising diffusion probabilistic models (DDPM) and denoising diffusion implicit models (DDIM), and the Langevin diffusion process. The solutions delivered by DDPM and DDIM are often remarkably realistic, but they are not always consistent with measurements because of likelihood intractability issues and the associated required approximations. Alternatively, using a Langevin process circumvents the intractable likelihood issue, but usually leads to restoration results of inferior quality and longer computing times. This paper presents a novel and highly computationally efficient image restoration method that carefully embeds a foundational DDPM denoiser within an empirical Bayesian Langevin algorithm, which jointly calibrates key model hyper-parameters as it estimates the model's posterior mean. Extensive experimental results on three canonical tasks (image deblurring, super-resolution, and inpainting) demonstrate that the proposed approach improves on state-of-the-art strategies both in image estimation accuracy and computing time.

cs.CV↗

arXiv2024

Do Bayesian imaging methods report trustworthy probabilities?

Bayesian statistics is a cornerstone of imaging sciences, underpinning many and varied approaches from Markov random fields to score-based denoising diffusion models. In addition to powerful image estimation methods, the Bayesian paradigm also provides a framework for uncertainty quantification and for using image data as quantitative evidence. These probabilistic capabilities are important for the rigorous interpretation of experimental results and for robust interfacing of quantitative imaging pipelines with scientific and decision-making processes. However, are the probabilities delivered by existing Bayesian imaging methods meaningful under replication of an experiment, or are they only meaningful as subjective measures of belief? This paper presents a Monte Carlo method to explore this question. We then leverage the proposed Monte Carlo method and run a large experiment requiring 1,000 GPU-hours to probe the accuracy of five canonical Bayesian imaging methods that are representative of some of the main Bayesian imaging strategies from the past decades (a score-based denoising diffusion technique, a plug-and-play Langevin algorithm utilising a Lipschitz-regularised DnCNN denoiser, a Bayesian method with a dictionary-based prior trained subject to a log-concavity constraint, an empirical Bayesian method with a total-variation prior, and a hierarchical Bayesian Gibbs sampler based on a Gaussian Markov random field model). We find that, a few cases, the probabilities reported by modern Bayesian imaging techniques are in broad agreement with long-term averages as observed over a large number of replication of an experiment, but existing Bayesian imaging methods are generally not able to deliver reliable uncertainty quantification results.

eess.IV↗

arXiv2024

Unsupervised Training of Convex Regularizers using Maximum Likelihood Estimation

Imaging is a standard example of an inverse problem, where the task of reconstructing a ground truth from a noisy measurement is ill-posed. Recent state-of-the-art approaches for imaging use deep learning, spearheaded by unrolled and end-to-end models and trained on various image datasets. However, many such methods require the availability of ground truth data, which may be unavailable or expensive, leading to a fundamental barrier that can not be bypassed by choice of architecture. Unsupervised learning presents an alternative paradigm that bypasses this requirement, as they can be learned directly on noisy data and do not require any ground truths. A principled Bayesian approach to unsupervised learning is to maximize the marginal likelihood with respect to the given noisy measurements, which is intrinsically linked to classical variational regularization. We propose an unsupervised approach using maximum marginal likelihood estimation to train a convex neural network-based image regularization term directly on noisy measurements, improving upon previous work in both model expressiveness and dataset size. Experiments demonstrate that the proposed method produces priors that are near competitive when compared to the analogous supervised training method for various image corruption operators, maintaining significantly better generalization properties when compared to end-to-end methods. Moreover, we provide a detailed theoretical analysis of the convergence properties of our proposed algorithm.

stat.ME↗

arXiv2024

A stochastic optimisation unadjusted Langevin method for empirical Bayesian estimation in semi-blind image deblurring problems

This paper presents a novel stochastic optimisation methodology to perform empirical Bayesian inference in semi-blind image deconvolution problems. Given a blurred image and a parametric class of possible operators, the proposed optimisation approach automatically calibrates the parameters of the blur model by maximum marginal likelihood estimation, followed by (non-blind) image deconvolution by maximum-a-posteriori estimation conditionally to the estimated model parameters. In addition to the blur model, the proposed approach also automatically calibrates the noise variance as well as any regularisation parameters. The marginal likelihood of the blur, noise variance, and regularisation parameters is generally computationally intractable, as it requires calculating several integrals over the entire solution space. Our approach addresses this difficulty by using a stochastic approximation proximal gradient optimisation scheme, which iteratively solves such integrals by using a Moreau-Yosida regularised unadjusted Langevin Markov chain Monte Carlo algorithm. This optimisation strategy can be easily and efficiently applied to any model that is log-concave, and by using the same gradient and proximal operators that are required to compute the maximum-a-posteriori solution by convex optimisation. We provide convergence guarantees for the proposed optimisation scheme under realistic and easily verifiable conditions and subsequently demonstrate the effectiveness of the approach with a series of deconvolution experiments and comparisons with alternative strategies from the state of the art.

stat.AP↗

arXiv2024

Statistical modelling and Bayesian inversion for a Compton imaging system: application to radioactive source localisation

This paper presents a statistical forward model for a Compton imaging system, called Compton imager. This system, under development at the University of Illinois Urbana Champaign, is a variant of Compton cameras with a single type of sensors which can simultaneously act as scatterers and absorbers. This imager is convenient for imaging situations requiring a wide field of view. The proposed statistical forward model is then used to solve the inverse problem of estimating the location and energy of point-like sources from observed data. This inverse problem is formulated and solved in a Bayesian framework by using a Metropolis within Gibbs algorithm for the estimation of the location, and an expectation-maximization algorithm for the estimation of the energy. This approach leads to more accurate estimation when compared with the deterministic standard back-projection approach, with the additional benefit of uncertainty quantification in the low photon imaging setting.

stat.AP↗