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Marek Behr

Publications and source records attributed to Marek Behr.

At least 37 records · Page 2Linked to original sources

The Performance Impact of Newton Iterations per Solver Call in Partitioned Fluid-Structure Interaction

The cost of a partitioned fluid-structure interaction scheme is typically assessed by the number of coupling iterations required per time step, while ignoring the Newton loops within the nonlinear sub-solvers. In this work, we discuss why these single-field iterations deserve more attention when evaluating the coupling's efficiency and how to find the optimal number of Newton steps per coupling iteration.

math.NA↗

Loading and relaxation dynamics of a red blood cell

We use mesoscale numerical simulations to investigate the unsteady dynamics of a single red blood cell (RBC) subjected to an external mechanical load. We carry out a detailed comparison between the {\it loading} (L) dynamics, following the imposition of the mechanical load on the RBC at rest, and the {\it relaxation} (R) dynamics, allowing the RBC to relax to its original shape after the sudden arrest of the mechanical load. Such a comparison is carried out by analyzing the characteristic times of the two corresponding dynamics, i.e., $t_L$ and $t_R$. When the intensity of the mechanical load is small enough, the two kinds of dynamics are {\it symmetrical} ($t_L \approx t_R$) and independent of the typology of mechanical load (intrinsic dynamics); otherwise, in marked contrast, an {\it asymmetry} is found, wherein the loading dynamics is typically faster than the relaxation one. This asymmetry manifests itself with non-universal characteristics, e.g., dependency on the applied load and/or on the viscoelastic properties of the RBC membrane. To deepen such a non-universal behaviour, we consider the viscosity of the erythrocyte membrane as a variable parameter and focus on three different typologies of mechanical load (mechanical stretching, shear flow, elongational flow): this allows to clarify how non-universality builds up in terms of the deformation and rotational contributions induced by the mechanical load on the membrane. Finally, we also investigate the effect of the elastic shear modulus on the characteristic times $t_L$ and $t_R$. Our results provide crucial and quantitative information on the unsteady dynamics of RBC and its membrane response to the imposition/cessation of external mechanical loads.

cond-mat.soft↗

Simulating dense granular flow using the $μ$($I$)-rheology within a space-time framework

A space-time framework is applied to simulate dense granular flow. Two different numerical experiments are performed: a column collapse and a dam break on an inclined plane. The experiments are modeled as two-phase flows. The dense granular material is represented by a constitutive model, the $μ$($I$)-rheology, that is based on the Coulomb's friction law, such that the normal stress applied by the pressure is related to the tangential stress. The model represents a complex shear thinning viscoplastic material behavior. The interface between the dense granular material and the surrounding light fluid is captured with a level set function. Due to discontinuities close to the the interface, the mesh requires a sufficient resolution. The space-time approach allows unstructured meshes in time and, therefore a well refined mesh in the temporal direction around the interface. In this study, results and performance of a flat and a simplex space time discretization are verified and analyzed.

cs.CE↗

A novel approach to fluid-structure interaction simulations involving large translation and contact

In this work, we present a novel method for the mesh update in flow problems with moving boundaries, the phantom domain deformation mesh update method (PD-DMUM). The PD-DMUM is designed to avoid remeshing; even in the event of large, unidirectional displacements of boundaries. The method combines the concept of two mesh adaptation approaches: (1) The virtual ring shear-slip mesh updatemethod (VR-SSMUM); and (2) the elastic mesh update method (EMUM). As in the VR-SSMUM, the PD-DMUMextends the fluid domain by a phantom domain; the PD-DMUM can thus locally adapt the element density. Combined with the EMUM, the PD-DMUMallows the consideration of arbitrary boundary movements. In this work, we apply the PD-DMUM in two test cases. Within the first test case, we validate the PD-DMUM in a 2D Poiseuille flow on a moving background mesh. Subsequently the fluid-structure interaction (FSI) problem in the second test case serves as a proof of concept. More, we stress the advantages of the novel method with regard to conventional mesh update approaches.

math.NA↗

Four-Dimensional Elastically Deformed Simplex Space-Time Meshes for Domains with Time Variant Topology

Thinking of the flow through biological or technical valves, there is a variety of applications in which the topology of a fluid domain changes over time. This topology change is characteristic for the physical behaviour, but poses a particular challenge in computer simulations. A way to overcome this challenge is to consider the space-time extent of the application as a contiguous computational domain. In this work, we obtain a boundary conforming discretization of the space-time domain with four-dimensional simplex elements (pentatopes). To facilitate the construction of pentatope meshes for complex geometries, the widely used elastic mesh update method is extended to four-dimensional meshes. In the resulting workflow, the topology change is elegantly included in the pentatope mesh and does not require any additional treatment during the simulation. The potential of simplex space-time meshes for domains with time variant topology is demonstrated in a valve simulation and a flow simulation inspired by a clamped artery.

math.NA↗

Finite element modelling of in-stent restenosis

From the perspective of coronary heart disease, the development of stents has come significantly far in reducing the associated mortality rate, drug-eluting stents being the epitome of innovative and effective solutions. Within this work, the intricate process of in-stent restenosis is modelled considering one of the significant growth factors and its effect on constituents of the arterial wall. A multiphysical modelling approach is adopted in this regard. Experimental investigations from the literature have been used to hypothesize the governing equations and the corresponding parameters. A staggered solution strategy is utilised to capture the transport phenomena as well as the growth and remodeling that follows stent implantation. The model herein developed serves as a tool to predict in-stent restenosis depending on the endothelial injury sustained and the protuberance of stents into the lumen of the arteries. Keywords: in-stent restenosis, smooth mucsle cells, platelet-derived growth factor, extracellular matrix, growth

cs.CE↗

Lattice Boltzmann simulations on the tumbling to tank-treading transition: effects of membrane viscosity

The tumbling to tank-treading (TB-TT) transition for red blood cells (RBCs) has been widely investigated, with a main focus on the effects of the viscosity ratio $λ$ (i.e., the ratio between the viscosities of the fluids inside and outside the membrane) and the shear rate $\dotγ$ applied to the RBC. However, the membrane viscosity $μ_m$ plays a major role in a realistic description of RBC's dynamics, and only a few works have systematically focused on its effects on the TB-TT transition. In this work, we provide a parametric investigation on the effect of membrane viscosity $μ_m$ on the TB-TT transition, for a single RBC. It is found that, at fixed viscosity ratios $λ$, larger values of $μ_m$ lead to an increased range of values of capillary number at which the TB-TT transition occurs. We systematically quantify such an increase by means of mesoscale numerical simulations based on the lattice Boltzmann models.

cond-mat.soft↗

Combining Boundary-Conforming Finite Element Meshes on Moving Domains Using a Sliding Mesh Approach

For most finite element simulations, boundary-conforming meshes have significant advantages in terms of accuracy or efficiency. This is particularly true for complex domains. However, with increased complexity of the domain, generating a boundary-conforming mesh becomes more difficult and time consuming. One might therefore decide to resort to an approach where individual boundary-conforming meshes are pieced together in a modular fashion to form a larger domain. This paper presents a stabilized finite element formulation for fluid and temperature equations on sliding meshes. It couples the solution fields of multiple subdomains whose boundaries slide along each other on common interfaces. Thus, the method allows to use highly tuned boundary-conforming meshes for each subdomain that are only coupled at the overlapping boundary interfaces. In contrast to standard overlapping or fictitious domain methods the coupling is broken down to few interfaces with reduced geometric dimension. The formulation consists of the following key ingredients: the coupling of the solution fields on the overlapping surfaces is imposed weakly using a stabilized version of Nitsche's method. It ensures mass and energy conservation at the common interfaces. Additionally, we allow to impose weak Dirichlet boundary conditions at the non-overlapping parts of the interfaces. We present a detailed numerical study for the resulting stabilized formulation. It shows optimal convergence behavior for both Newtonian and generalized Newtonian material models. Simulations of flow of plastic melt inside single-screw as well as twin-screw extruders demonstrate the applicability of the method to complex and relevant industrial applications.

math.NA↗

Finite-Element Formulation for Advection-Reaction Equations with Change of Variable and Discontinuity Capturing

We propose a change of variable approach and discontinuity capturing methods to ensure physical constraints for advection-reaction equations discretized by the finite element method. This change of variable confines the concentration below an upper bound in a very natural way. For the non-negativity constraint, we propose to use a discontinuity capturing method defined on the reference element that is combined with an anisotropic crosswind-dissipation operator. This discontinuity capturing cannot completely eliminate negative values but effectively minimizes their occurrence. The proposed methods are applied to different biophysical models and show a good agreement with experimental results for the FDA benchmark blood pump for a physiological red blood cell pore formation model.

math.NA↗

A Multi-Vector Interface Quasi-Newton Method with Linear Complexity for Partitioned Fluid-Structure Interaction

In recent years, interface quasi-Newton methods have gained growing attention in the fluid-structure interaction community by significantly improving partitioned solution schemes: They not only help to control the inherent added-mass instability, but also prove to substantially speed up the coupling's convergence. In this work, we present a novel variant: The key idea is to build on the multi-vector Jacobian update scheme first presented by Bogaers et al. (2014) and avoid any explicit representation of the (inverse) Jacobian approximation, since it slows down the solution for large systems. Instead, all terms involving a quadratic complexity have been systematically eliminated. The result is a new multi-vector interface quasi-Newton variant whose computational cost scales linearly with the problem size.

cs.CE↗

Space-Time NURBS-Enhanced Finite Elements for Solving the Compressible Navier-Stokes Equations

This article considers the NURBS-Enhanced Finite Element Method (NEFEM) applied to the compressible Navier-Stokes equations. NEFEM, in contrast to conventional finite element formulations, utilizes a NURBS-based computational domain representation. Such representations are typically available from Computer-Aided-Design tools. Within the NEFEM, the NURBS boundary definition is utilized only for elements that are touching the domain boundaries. The remaining interior of the domain is discretized using standard finite elements. Contrary to isogeometric analysis, no volume splines are necessary. The key technical features of NEFEM will be discussed in detail, followed by a set of numerical examples that are used to compare NEFEM against conventional finite element methods with the focus on compressible flow.

math.NA↗

Simplex space-time meshes in two-phase flow simulations

In this paper, we present the numerical solution of two-phase flow problems of engineering significance with a space-time finite element method that allows for local temporal refinement. Our basis is the method presented in [3], which allows for arbitrary temporal refinement in preselected regions of the mesh. It has been extended to adaptive temporal refinement that is governed by a quantity that is part of the solution process, namely, the interface position in two-phase flow. Due to local effects such as surface tension, jumps in material properties, etc., the interface can, in general, be considered a region that requires high flexibility and high resolution, both in space and in time. The new method, which leads to tetrahedral (for 2D problems) and pentatope (for 3D problems) meshes, offers an efficient yet accurate approach to the underlying two-phase flow problems.

cs.CE↗

Simplex space-time meshes in thermally coupled two-phase flow simulations of mold filling

The quality of plastic parts produced through injection molding depends on many factors. Especially during the filling stage, defects such as weld lines, burrs, or insufficient filling can occur. Numerical methods need to be employed to improve product quality by means of predicting and simulating the injection molding process. In the current work, a highly viscous incompressible non-isothermal two-phase flow is simulated, which takes place during the cavity filling. The injected melt exhibits a shear-thinning behavior, which is described by the Carreau-WLF model. Besides that, a novel discretization method is used in the context of 4D simplex space-time grids [2]. This method allows for local temporal refinement in the vicinity of, e.g., the evolving front of the melt [10]. Utilizing such an adaptive refinement can lead to locally improved numerical accuracy while maintaining the highest possible computational efficiency in the remaining of the domain. For demonstration purposes, a set of 2D and 3D benchmark cases, that involve the filling of various cavities with a distributor, are presented.

cs.CE↗

The Variational Multiscale Formulation for the Fully-Implicit Log-Morphology Equation as a Tensor-Based Blood Damage Model

We derive a variational multiscale (VMS) finite element formulation for a viscoelastic, tensor-based blood damage model. The tensor equation is numerically stabilized by a logarithmic shape tensor description that prevents unphysical, negative eigenvalues. The resulting VMS stabilization terms for this so-called log-morph equation are presented together with their special numerical treatment. Results for a 2D rotating stirrer test case obtained from log-morph simulations with both SUPG and VMS stabilization show significantly improved numerical behavior if compared with Galerkin/least squares (GLS) stabilized untransformed morphology simulation results. The newly proposed method is also successfully applied to a state-of-the-art centrifugal ventricular assist device (VAD), and clear advantages of the VMS stabilization compared to the SUPG stabilized formulation are presented.

math.NA↗

Simplex Space-Time Meshes in Compressible Flow Simulations

Employing simplex space-time meshes enlarges the scope of compressible flow simulations. The simultaneous discretization of space and time with simplex elements extends the flexibility of unstructured meshes from space to time. In this work, we adopt a finite element formulation for compressible flows to simplex space-time meshes. The method obtained allows, e.g., flow simulations on spatial domains that change topology with time. We demonstrate this with the two-dimensional simulation of compressible flow in a valve that fully closes and opens again. Furthermore, simplex space-time meshes facilitate local temporal refinement. A three-dimensional transient simulation of blow-by past piston rings is run in parallel on 120 cores. The timings point out savings of computation time gained from local temporal refinement in space-time meshes.

math.NA↗

Boundary-Conforming Finite Element Methods for Twin-Screw Extruders: Unsteady - Temperature-Dependent - Non-Newtonian Simulations

We present a boundary-conforming space-time finite element method to compute the flow inside co-rotating, self-wiping twin-screw extruders. The mesh update is carried out using the newly developed Snapping Reference Mesh Update Method (SRMUM). It allows to compute time-dependent flow solutions inside twin-screw extruders equipped with conveying screw elements without any need for re-meshing and projections of solutions - making it a very efficient method. We provide cases for Newtonian and non-Newtonian fluids in 2D and 3D, that show mesh convergence of the solution as well as agreement to experimental results. Furthermore, a complex, unsteady and temperature-dependent 3D test case with multiple screw elements illustrates the potential of the method also for industrial applications.

cs.CE↗

Fluid-structure interaction with NURBS-based coupling

Engineering design via CAD software relies on Non-Uniform Rational B-Splines (NURBS) as a means for representing and communicating geometry. Therefore, in general, a NURBS description of a given design can be considered the exact description. The development of isogeometric methods has made the geometry available to analysis methods Hughes et al. (2005). Isogeometric analysis has been particularly successful in structural analysis; one reason being the wide-spread use of two-dimensional finite elements in this field. For fluid dynamics, where three-dimensional analysis is usually indispensable, isogeometric methods are more complicated, yet of course not impossible, to apply in a general fashion. This paper describes a method that enables the solution of fluid-structure interaction with a matching spline description of the interface. On the structural side, the spline is used in an isogeometric setting. On the fluid side, the same spline is used in the framework of a NURBS-enhanced finite element method (extension of Sevilla et al. (2011)). The coupling of the structural and the fluid solution is greatly facilitated by the common spline interface. The use of the identical spline representation for both sides permits a direct transfer of the necessary quantities, all the while still allowing an adjusted, individual refinement level for both sides.

math.NA↗

An ultraweak DPG method for viscoelastic fluids

We explore a vexing benchmark problem for viscoelastic fluid flows with the discontinuous Petrov-Galerkin (DPG) finite element method of Demkowicz and Gopalakrishnan [1,2]. In our analysis, we develop an intrinsic a posteriori error indicator which we use for adaptive mesh generation. The DPG method is useful for the problem we consider because the method is inherently stable---requiring no stabilization of the linearized discretization in order to handle the advective terms in the model. Because stabilization is a pressing issue in these models, this happens to become a very useful property of the method which simplifies our analysis. This built-in stability at all length scales and the a posteriori error indicator additionally allows for the generation of parameter-specific meshes starting from a common coarse initial mesh. A DPG discretization always produces a symmetric positive definite stiffness matrix. This feature allows us to use the most efficient direct solvers for all of our computations. We use the Camellia finite element software package [3,4] for all of our analysis.

math.NA↗