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Marek Cieplak

Publications and source records attributed to Marek Cieplak.

76 records · Page 5Linked to original sources

Master equation approach to protein folding and kinetic traps

The master equation for 12-monomer lattice heteropolymers is solved numerically and the time evolution of the occupancy of the native state is determined. At low temperatures, the median folding time follows the Arrhenius law and is governed by the longest relaxation time. For good folders, significant kinetic traps appear in the folding funnel whereas for bad folders, the traps also occur in non-native energy valleys.

cond-mat.stat-mech↗

Models of Fractal River Basins

Two distinct models for self-similar and self-affine river basins are numerically investigated. They yield fractal aggregation patterns following non-trivial power laws in experimentally relevant distributions. Previous numerical estimates on the critical exponents, when existing, are confirmed and superseded. A physical motivation for both models in the present framework is also discussed.

cond-mat.stat-mech↗

Scaling of the Random-Field Ising Model at Zero Temperature

The exact determination of ground states of small systems is used in a scaling study of the random-field Ising model. While three variants of the model are found to be in the same universality class in 3 dimensions, the Gaussian and bimodal models behave distinctly in 4 dimensions with the latter apparently having a discontinuous jump in the magnetization. A finite-size scaling analysis is presented for this transition.

cond-mat.dis-nn↗

DOMAIN WALLS IN THE QUANTUM TRANSVERSE ISING MODEL

We discuss several problems concerning domain walls in the spin $S$ Ising model at zero temperature in a magnetic field, $H/(2S)$, applied in the $x$ direction. Some results are also given for the planar ($y$-$z$) model in a transverse field. We treat the quantum problem in one dimension by perturbation theory at small $H$ and numerically over a large range of $H$. We obtain the spin density profile by fixing the spins at opposite ends of the chain to have opposite signs of $S_z$. One dimension is special in that there the quantum width of the wall is proportional to the size $L$ of the system. We also study the quantitative features of the `particle' band which extends up to energies of order $H$ above the ground state. Except for the planar limit, this particle band is well separated from excitations having energy $J/S$ involving creation of more walls. At large $S$ this particle band develops energy gaps and the lowest sub-band has tunnel splittings of order $H2^{1-2S}$. This scale of energy gives rise to anomalous scaling with respect to a) finite size, b) temperature, or c) random potentials. The intrinsic width of the domain wall and the pinning energy are also defined and calculated in certain limiting cases. The general conclusion is that quantum effects prevent the wall from being sharp and in higher dimension would prevent sudden excursions in the configuration of the wall.

cond-mat↗