arXiv subjects

Maria A. Zuluaga

Publications and source records attributed to Maria A. Zuluaga.

36 records · Page 2Linked to original sources

arXiv2022

AI-based artistic representation of emotions from EEG signals: a discussion on fairness, inclusion, and aesthetics

While Artificial Intelligence (AI) technologies are being progressively developed, artists and researchers are investigating their role in artistic practices. In this work, we present an AI-based Brain-Computer Interface (BCI) in which humans and machines interact to express feelings artistically. This system and its production of images give opportunities to reflect on the complexities and range of human emotions and their expressions. In this discussion, we seek to understand the dynamics of this interaction to reach better co-existence in fairness, inclusion, and aesthetics.

cs.AI↗

arXiv2022

Exploring auditory acoustic features for the diagnosis of the Covid-19

The current outbreak of a coronavirus, has quickly escalated to become a serious global problem that has now been declared a Public Health Emergency of International Concern by the World Health Organization. Infectious diseases know no borders, so when it comes to controlling outbreaks, timing is absolutely essential. It is so important to detect threats as early as possible, before they spread. After a first successful DiCOVA challenge, the organisers released second DiCOVA challenge with the aim of diagnosing COVID-19 through the use of breath, cough and speech audio samples. This work presents the details of the automatic system for COVID-19 detection using breath, cough and speech recordings. We developed different front-end auditory acoustic features along with a bidirectional Long Short-Term Memory (bi-LSTM) as classifier. The results are promising and have demonstrated the high complementary behaviour among the auditory acoustic features in the Breathing, Cough and Speech tracks giving an AUC of 86.60% on the test set.

cs.SD↗

arXiv2021

Vessel-CAPTCHA: an efficient learning framework for vessel annotation and segmentation

Deep learning techniques for 3D brain vessel image segmentation have not been as successful as in the segmentation of other organs and tissues. This can be explained by two factors. First, deep learning techniques tend to show poor performances at the segmentation of relatively small objects compared to the size of the full image. Second, due to the complexity of vascular trees and the small size of vessels, it is challenging to obtain the amount of annotated training data typically needed by deep learning methods. To address these problems, we propose a novel annotation-efficient deep learning vessel segmentation framework. The framework avoids pixel-wise annotations, only requiring weak patch-level labels to discriminate between vessel and non-vessel 2D patches in the training set, in a setup similar to the CAPTCHAs used to differentiate humans from bots in web applications. The user-provided weak annotations are used for two tasks: 1) to synthesize pixel-wise pseudo-labels for vessels and background in each patch, which are used to train a segmentation network, and 2) to train a classifier network. The classifier network allows to generate additional weak patch labels, further reducing the annotation burden, and it acts as a noise filter for poor quality images. We use this framework for the segmentation of the cerebrovascular tree in Time-of-Flight angiography (TOF) and Susceptibility-Weighted Images (SWI). The results show that the framework achieves state-of-the-art accuracy, while reducing the annotation time by ~77% w.r.t. learning-based segmentation methods using pixel-wise labels for training.

cs.CV↗

arXiv2021

PANACEA cough sound-based diagnosis of COVID-19 for the DiCOVA 2021 Challenge

The COVID-19 pandemic has led to the saturation of public health services worldwide. In this scenario, the early diagnosis of SARS-Cov-2 infections can help to stop or slow the spread of the virus and to manage the demand upon health services. This is especially important when resources are also being stretched by heightened demand linked to other seasonal diseases, such as the flu. In this context, the organisers of the DiCOVA 2021 challenge have collected a database with the aim of diagnosing COVID-19 through the use of coughing audio samples. This work presents the details of the automatic system for COVID-19 detection from cough recordings presented by team PANACEA. This team consists of researchers from two European academic institutions and one company: EURECOM (France), University of Granada (Spain), and Biometric Vox S.L. (Spain). We developed several systems based on established signal processing and machine learning methods. Our best system employs a Teager energy operator cepstral coefficients (TECCs) based frontend and Light gradient boosting machine (LightGBM) backend. The AUC obtained by this system on the test set is 76.31% which corresponds to a 10% improvement over the official baseline.

cs.SD↗

arXiv2021

Maximum Roaming Multi-Task Learning

Multi-task learning has gained popularity due to the advantages it provides with respect to resource usage and performance. Nonetheless, the joint optimization of parameters with respect to multiple tasks remains an active research topic. Sub-partitioning the parameters between different tasks has proven to be an efficient way to relax the optimization constraints over the shared weights, may the partitions be disjoint or overlapping. However, one drawback of this approach is that it can weaken the inductive bias generally set up by the joint task optimization. In this work, we present a novel way to partition the parameter space without weakening the inductive bias. Specifically, we propose Maximum Roaming, a method inspired by dropout that randomly varies the parameter partitioning, while forcing them to visit as many tasks as possible at a regulated frequency, so that the network fully adapts to each update. We study the properties of our method through experiments on a variety of visual multi-task data sets. Experimental results suggest that the regularization brought by roaming has more impact on performance than usual partitioning optimization strategies. The overall method is flexible, easily applicable, provides superior regularization and consistently achieves improved performances compared to recent multi-task learning formulations.

cs.CV↗

arXiv2021

One-class Autoencoder Approach for Optimal Electrode Set-up Identification in Wearable EEG Event Monitoring

A limiting factor towards the wide routine use of wearables devices for continuous healthcare monitoring is their cumbersome and obtrusive nature. This is particularly true for electroencephalography (EEG) recordings, which require the placement of multiple electrodes in contact with the scalp. In this work, we propose to identify the optimal wearable EEG electrode set-up, in terms of minimal number of electrodes, comfortable location and performance, for EEG-based event detection and monitoring. By relying on the demonstrated power of autoencoder (AE) networks to learn latent representations from high-dimensional data, our proposed strategy trains an AE architecture in a one-class classification setup with different electrode set-ups as input data. The resulting models are assessed using the F-score and the best set-up is chosen according to the established optimal criteria. Using alpha wave detection as use case, we demonstrate that the proposed method allows to detect an alpha state from an optimal set-up consisting of electrodes in the forehead and behind the ear, with an average F-score of 0.78. Our results suggest that a learning-based approach can be used to enable the design and implementation of optimized wearable devices for real-life healthcare monitoring.

eess.SP↗

arXiv2021

Efficient Model Monitoring for Quality Control in Cardiac Image Segmentation

Deep learning methods have reached state-of-the-art performance in cardiac image segmentation. Currently, the main bottleneck towards their effective translation into clinics requires assuring continuous high model performance and segmentation results. In this work, we present a novel learning framework to monitor the performance of heart segmentation models in the absence of ground truth. Formulated as an anomaly detection problem, the monitoring framework allows deriving surrogate quality measures for a segmentation and allows flagging suspicious results. We propose two different types of quality measures, a global score and a pixel-wise map. We demonstrate their use by reproducing the final rankings of a cardiac segmentation challenge in the absence of ground truth. Results show that our framework is accurate, fast, and scalable, confirming it is a viable option for quality control monitoring in clinical practice and large population studies.

eess.IV↗

arXiv2021

Multi-Atlas Based Pathological Stratification of d-TGA Congenital Heart Disease

One of the main sources of error in multi-atlas segmentation propagation approaches comes from the use of atlas databases that are morphologically dissimilar to the target image. In this work, we exploit the segmentation errors associated with poor atlas selection to build a computer aided diagnosis (CAD) system for pathological classification in post-operative dextro-transposition of the great arteries (d-TGA). The proposed approach extracts a set of features, which describe the quality of a segmentation, and introduces them into a logical decision tree that provides the final diagnosis. We have validated our method on a set of 60 whole heart MR images containing healthy cases and two different forms of post-operative d-TGA. The reported overall CAD system accuracy was of 93.33%.

cs.CV↗

arXiv2020

Model Monitoring and Dynamic Model Selection in Travel Time-series Forecasting

Accurate travel products price forecasting is a highly desired feature that allows customers to take informed decisions about purchases, and companies to build and offer attractive tour packages. Thanks to machine learning (ML), it is now relatively cheap to develop highly accurate statistical models for price time-series forecasting. However, once models are deployed in production, it is their monitoring, maintenance and improvement which carry most of the costs and difficulties over time. We introduce a data-driven framework to continuously monitor and maintain deployed time-series forecasting models' performance, to guarantee stable performance of travel products price forecasting models. Under a supervised learning approach, we predict the errors of time-series forecasting models over time, and use this predicted performance measure to achieve both model monitoring and maintenance. We validate the proposed method on a dataset of 18K time-series from flight and hotel prices collected over two years and on two public benchmarks.

stat.AP↗

arXiv2020

Automatic Right Ventricle Segmentation using Multi-Label Fusion in Cardiac MRI

Accurate segmentation of the right ventricle (RV) is a crucial step in the assessment of the ventricular structure and function. Yet, due to its complex anatomy and motion segmentation of the RV has not been as largely studied as the left ventricle. This paper presents a fully automatic method for the segmentation of the RV in cardiac magnetic resonance images (MRI). The method uses a coarse-to-fine segmentation strategy in combination with a multi-atlas propagation segmentation framework. Based on a cross correlation metric, our method selects the best atlases for propagation allowing the refinement of the segmentation at each iteration of the propagation. The proposed method was evaluated on 32 cardiac MRI datasets provided by the RV Segmentation Challenge in Cardiac MRI.

eess.IV↗

arXiv2020

Multi-objective Consensus Clustering Framework for Flight Search Recommendation

In the travel industry, online customers book their travel itinerary according to several features, like cost and duration of the travel or the quality of amenities. To provide personalized recommendations for travel searches, an appropriate segmentation of customers is required. Clustering ensemble approaches were developed to overcome well-known problems of classical clustering approaches, that each rely on a different theoretical model and can thus identify in the data space only clusters corresponding to this model. Clustering ensemble approaches combine multiple clustering results, each from a different algorithmic configuration, for generating more robust consensus clusters corresponding to agreements between initial clusters. We present a new clustering ensemble multi-objective optimization-based framework developed for analyzing Amadeus customer search data and improve personalized recommendations. This framework optimizes diversity in the clustering ensemble search space and automatically determines an appropriate number of clusters without requiring user's input. Experimental results compare the efficiency of this approach with other existing approaches on Amadeus customer search data in terms of internal (Adjusted Rand Index) and external (Amadeus business metric) validations.

cs.IR↗

arXiv2019

Towards Quantifying Neurovascular Resilience

Whilst grading neurovascular abnormalities is critical for prompt surgical repair, no statistical markers are currently available for predicting the risk of adverse events, such as stroke, and the overall resilience of a network to vascular complications. The lack of compact, fast, and scalable simulations with network perturbations impedes the analysis of the vascular resilience to life-threatening conditions, surgical interventions and long-term follow-up. We introduce a graph-based approach for efficient simulations, which statistically estimates biomarkers from a series of perturbations on the patient-specific vascular network. Analog-equivalent circuits are derived from clinical angiographies. Vascular graphs embed mechanical attributes modelling the impedance of a tubular structure with stenosis, tortuosity and complete occlusions. We evaluate pressure and flow distributions, simulating healthy topologies and abnormal variants with perturbations in key pathological scenarios. These describe the intrinsic network resilience to pathology, and delineate the underlying cerebrovascular autoregulation mechanisms. Lastly, a putative graph sampling strategy is devised on the same formulation, to support the topological inference of uncertain neurovascular graphs.

q-bio.QM↗

arXiv2019

Grey matter sublayer thickness estimation in themouse cerebellum

The cerebellar grey matter morphology is an important feature to study neurodegenerative diseases such as Alzheimer's disease or Down's syndrome. Its volume or thickness is commonly used as a surrogate imaging biomarker for such diseases. Most studies about grey matter thickness estimation focused on the cortex, and little attention has been drawn on the morphology of the cerebellum. Using ex vivo high-resolution MRI, it is now possible to visualise the different cell layers in the mouse cerebellum. In this work, we introduce a framework to extract the Purkinje layer within the grey matter, enabling the estimation of the thickness of the cerebellar grey matter, the granular layer and molecular layer from gadolinium-enhanced ex vivo mouse brain MRI. Application to mouse model of Down's syndrome found reduced cortical and layer thicknesses in the transchromosomic group.

cs.CV↗

arXiv2018

Elastic Registration of Geodesic Vascular Graphs

Vascular graphs can embed a number of high-level features, from morphological parameters, to functional biomarkers, and represent an invaluable tool for longitudinal and cross-sectional clinical inference. This, however, is only feasible when graphs are co-registered together, allowing coherent multiple comparisons. The robust registration of vascular topologies stands therefore as key enabling technology for group-wise analyses. In this work, we present an end-to-end vascular graph registration approach, that aligns networks with non-linear geometries and topological deformations, by introducing a novel overconnected geodesic vascular graph formulation, and without enforcing any anatomical prior constraint. The 3D elastic graph registration is then performed with state-of-the-art graph matching methods used in computer vision. Promising results of vascular matching are found using graphs from synthetic and real angiographies. Observations and future designs are discussed towards potential clinical applications.

cs.CV↗

arXiv2018

VTrails: Inferring Vessels with Geodesic Connectivity Trees

The analysis of vessel morphology and connectivity has an impact on a number of cardiovascular and neurovascular applications by providing patient-specific high-level quantitative features such as spatial location, direction and scale. In this paper we present an end-to-end approach to extract an acyclic vascular tree from angiographic data by solving a connectivity-enforcing anisotropic fast marching over a voxel-wise tensor field representing the orientation of the underlying vascular tree. The method is validated using synthetic and real vascular images. We compare VTrails against classical and state-of-the-art ridge detectors for tubular structures by assessing the connectedness of the vesselness map and inspecting the synthesized tensor field as proof of concept. VTrails performance is evaluated on images with different levels of degradation: we verify that the extracted vascular network is an acyclic graph (i.e. a tree), and we report the extraction accuracy, precision and recall.

cs.CV↗

arXiv2017

Interactive Medical Image Segmentation using Deep Learning with Image-specific Fine-tuning

Convolutional neural networks (CNNs) have achieved state-of-the-art performance for automatic medical image segmentation. However, they have not demonstrated sufficiently accurate and robust results for clinical use. In addition, they are limited by the lack of image-specific adaptation and the lack of generalizability to previously unseen object classes. To address these problems, we propose a novel deep learning-based framework for interactive segmentation by incorporating CNNs into a bounding box and scribble-based segmentation pipeline. We propose image-specific fine-tuning to make a CNN model adaptive to a specific test image, which can be either unsupervised (without additional user interactions) or supervised (with additional scribbles). We also propose a weighted loss function considering network and interaction-based uncertainty for the fine-tuning. We applied this framework to two applications: 2D segmentation of multiple organs from fetal MR slices, where only two types of these organs were annotated for training; and 3D segmentation of brain tumor core (excluding edema) and whole brain tumor (including edema) from different MR sequences, where only tumor cores in one MR sequence were annotated for training. Experimental results show that 1) our model is more robust to segment previously unseen objects than state-of-the-art CNNs; 2) image-specific fine-tuning with the proposed weighted loss function significantly improves segmentation accuracy; and 3) our method leads to accurate results with fewer user interactions and less user time than traditional interactive segmentation methods.

cs.CV↗

arXiv2017

DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation

Accurate medical image segmentation is essential for diagnosis, surgical planning and many other applications. Convolutional Neural Networks (CNNs) have become the state-of-the-art automatic segmentation methods. However, fully automatic results may still need to be refined to become accurate and robust enough for clinical use. We propose a deep learning-based interactive segmentation method to improve the results obtained by an automatic CNN and to reduce user interactions during refinement for higher accuracy. We use one CNN to obtain an initial automatic segmentation, on which user interactions are added to indicate mis-segmentations. Another CNN takes as input the user interactions with the initial segmentation and gives a refined result. We propose to combine user interactions with CNNs through geodesic distance transforms, and propose a resolution-preserving network that gives a better dense prediction. In addition, we integrate user interactions as hard constraints into a back-propagatable Conditional Random Field. We validated the proposed framework in the context of 2D placenta segmentation from fetal MRI and 3D brain tumor segmentation from FLAIR images. Experimental results show our method achieves a large improvement from automatic CNNs, and obtains comparable and even higher accuracy with fewer user interventions and less time compared with traditional interactive methods.

cs.CV↗

arXiv2016

What is the distribution of the number of unique original items in a bootstrap sample?

Sampling with replacement occurs in many settings in machine learning, notably in the bagging ensemble technique and the .632+ validation scheme. The number of unique original items in a bootstrap sample can have an important role in the behaviour of prediction models learned on it. Indeed, there are uncontrived examples where duplicate items have no effect. The purpose of this report is to present the distribution of the number of unique original items in a bootstrap sample clearly and concisely, with a view to enabling other machine learning researchers to understand and control this quantity in existing and future resampling techniques. We describe the key characteristics of this distribution along with the generalisation for the case where items come from distinct categories, as in classification. In both cases we discuss the normal limit, and conduct an empirical investigation to derive a heuristic for when a normal approximation is permissible.

stat.ML↗