SearcharxivSearch

arXiv subjects

Maria Abu-Sini

Publications and source records attributed to Maria Abu-Sini.

2 recordsLinked to original sources

Near Optimal Code Construction for the Adversarial Torn Paper Channel With Edit Errors

Motivated by DNA storage systems and 3D fingerprinting, this work studies the adversarial torn paper channel with edit errors. This channel first applies at most $t_e$ edit errors (i.e., insertions, deletions, and substitutions) to the transmitted word and then breaks it into $t+1$ fragments at arbitrary positions. In this paper, we construct a near optimal error correcting code for this channel, which will be referred to as a $t$-breaks $t_e$-edit-errors resilient code. This code enables reconstructing the transmitted codeword from the $t+1$ noisy fragments. Moreover, we study list decoding of the torn paper channel by deriving bounds on the size of the list (of codewords) obtained from cutting a codeword of a $t$-breaks resilient code $t'$ times, where $t' > t$.

cs.IT

Coding Schemes for the Noisy Torn Paper Channel

To make DNA a suitable medium for archival data storage, it is essential to consider the decay process of the strands observed in DNA storage systems. This paper studies the decay process as a probabilistic noisy torn paper channel (TPC), which first corrupts the bits of the transmitted sequence in a probabilistic manner by substitutions, then breaks the sequence into a set of noisy unordered substrings. The present work devises coding schemes for the noisy TPC by embedding markers in the transmitted sequence. We investigate the use of static markers and markers connected to the data in the form of hash functions. These two tools have also been recently exploited to tackle the noiseless TPC. Simulations show that static markers excel at higher substitution probabilities, while data-dependent markers are superior at lower noise levels. Both approaches achieve reconstruction rates exceeding $99\%$ with no false decodings observed, primarily limited by computational resources.

cs.IT