arXiv subjects

Maria G. Fyta

Publications and source records attributed to Maria G. Fyta.

6 recordsLinked to original sources

arXiv2007

Multiscale coupling of molecular dynamics and hydrodynamics: application to DNA translocation through a nanopore

We present a multiscale approach to the modeling of polymer dynamics in the presence of a fluid solvent. The approach combines Langevin Molecular Dynamics (MD) techniques with a mesoscopic Lattice-Boltzmann (LB) method for the solvent dynamics. A unique feature of the present approach is that hydrodynamic interactions between the solute macromolecule and the aqueous solvent are handled explicitly, and yet in a computationally tractable way due to the dual particle-field nature of the LB solver. The suitability of the present LB-MD multiscale approach is demonstrated for the problem of polymer fast translocation through a nanopore. We also provide an interpretation of our results in the context of DNA translocation through a nanopore, a problem that has attracted much theoretical and experimental attention recently.

physics.bio-ph↗

arXiv2006

Structure, elastic properties and strength of amorphous and nanocomposite carbon

We study theoretically the equilibrium structure, as well as the response under external load, of characteristic carbon-based materials. The materials considered include diamond, amorphous carbon (a-C), ``amorphous diamond'' and nanocomposite amorphous carbon (na-C). A universal bulk-modulus versus density curve is obeyed by all structures we consider. We calculate the dependence of elastic constants on the density. The strength of a-C was found to increase in roughly a linear manner, with increasing concentration of four-fold atoms, with the maximum stress of the strongest a-C sample being about half that of diamond. The response of na-C to external load is essentially identical to the response of the embedding a-C matrix.

cond-mat.mtrl-sci↗

arXiv2006

Structure, stability and stress properties of amorphous and nanostructured carbon films

Structural and mechanical properties of amorphous and nanocomposite carbon are investigated using tight-binding molecular dynamics and Monte Carlo simulations. In the case of amorphous carbon, we show that the variation of sp^3 fraction as a function of density is linear over the whole range of possible densities, and that the bulk moduli follow closely the power-law variation suggested by Thorpe. We also review earlier work pertained to the intrinsic stress state of tetrahedral amorphous carbon. In the case of nanocomposites, we show that the diamond inclusions are stable only in dense amorphous tetrahedral matrices. Their hardness is considerably higher than that of pure amorphous carbon films. Fully relaxed diamond nanocomposites possess zero average intrinsic stress.

cond-mat.mtrl-sci↗

arXiv2006

Insights into the fracture mechanisms and strength of amorphous and nanocomposite carbon

Tight-binding molecular dynamics simulations shed light into the fracture mechanisms and the ideal strength of tetrahedral amorphous carbon and of nanocomposite carbon containing diamond crystallites, two of the hardest materials. It is found that fracture in the nanocomposites, under tensile or shear load, occurs inter-grain and so their ideal strength is similar to the pure amorphous phase. The onset of fracture takes place at weakly bonded sp^3 sites in the amorphous matrix. On the other hand, the nanodiamond inclusions significantly enhance the elastic moduli, which approach those of diamond.

cond-mat.mtrl-sci↗

arXiv2006

Computer Simulations of Carbon Nanostructures under Pressure

Several interesting phenomena are observed when materials are put under pressure. The goal is to achieve modification and control over their mechanical and electronic (conduction) properties. Within this spirit, we have recently focused our attention into how carbon nanostructures respond to hydrostatic pressure. We performed Monte Carlo simulations with the Tersoff potential of various free-standing carbon nanostructures. These range from fullerenes, onions and carbon spheres to nanotubes and nanodiamonds. Our simulations show that the nanostructures undergo some notable structural modifications.

cond-mat.mtrl-sci↗

arXiv2006

Energetics and stability of nanostructured amorphous carbon

Monte Carlo simulations, supplemented by ab initio calculations, shed light into the energetics and thermodynamic stability of nanostructured amorphous carbon. The interaction of the embedded nanocrystals with the host amorphous matrix is shown to determine in a large degree the stability and the relative energy differences among carbon phases. Diamonds are stable structures in matrices with sp^3 fraction over 60%. Schwarzites are stable in low-coordinated networks. Other sp^2-bonded structures are metastable.

cond-mat.mtrl-sci↗