arXiv subjects

Marino Miculan

Publications and source records attributed to Marino Miculan.

26 records · Page 2Linked to original sources

arXiv2014

GSOS for non-deterministic processes with quantitative aspects

Recently, some general frameworks have been proposed as unifying theories for processes combining non-determinism with quantitative aspects (such as probabilistic or stochastically timed executions), aiming to provide general results and tools. This paper provides two contributions in this respect. First, we present a general GSOS specification format (and a corresponding notion of bisimulation) for non-deterministic processes with quantitative aspects. These specifications define labelled transition systems according to the ULTraS model, an extension of the usual LTSs where the transition relation associates any source state and transition label with state reachability weight functions (like, e.g., probability distributions). This format, hence called Weight Function SOS (WFSOS), covers many known systems and their bisimulations (e.g. PEPA, TIPP, PCSP) and GSOS formats (e.g. GSOS, Weighted GSOS, Segala-GSOS, among others). The second contribution is a characterization of these systems as coalgebras of a class of functors, parametric on the weight structure. This result allows us to prove soundness of the WFSOS specification format, and that bisimilarities induced by these specifications are always congruences.

cs.LO↗

arXiv2013

Weak bisimulations for labelled transition systems weighted over semirings

Weighted labelled transition systems are LTSs whose transitions are given weights drawn from a commutative monoid. WLTSs subsume a wide range of LTSs, providing a general notion of strong (weighted) bisimulation. In this paper we extend this framework towards other behavioural equivalences, by considering semirings of weights. Taking advantage of this extra structure, we introduce a general notion of weak weighted bisimulation. We show that weak weighted bisimulation coincides with the usual weak bisimulations in the cases of non-deterministic and fully-probabilistic systems; moreover, it naturally provides a definition of weak bisimulation also for kinds of LTSs where this notion is currently missing (such as, stochastic systems). Finally, we provide a categorical account of the coalgebraic construction of weak weighted bisimulation; this construction points out how to port our approach to other equivalences based on different notion of observability.

cs.LO↗

arXiv2012

Implementing the Stochastics Brane Calculus in a Generic Stochastic Abstract Machine

In this paper, we deal with the problem of implementing an abstract machine for a stochastic version of the Brane Calculus. Instead of defining an ad hoc abstract machine, we consider the generic stochastic abstract machine introduced by Lakin, Paulevé and Phillips. The nested structure of membranes is flattened into a set of species where the hierarchical structure is represented by means of names. In order to reduce the overhead introduced by this encoding, we modify the machine by adding a copy-on-write optimization strategy. We prove that this implementation is adequate with respect to the stochastic structural operational semantics recently given for the Brane Calculus. These techniques can be ported also to other stochastic calculi dealing with nested structures.

cs.CE↗

arXiv2010

Measurable Stochastics for Brane Calculus

We give a stochastic extension of the Brane Calculus, along the lines of recent work by Cardelli and Mardare. In this presentation, the semantics of a Brane process is a measure of the stochastic distribution of possible derivations. To this end, we first introduce a labelled transition system for Brane Calculus, proving its adequacy w.r.t. the usual reduction semantics. Then, brane systems are presented as Markov processes over the measurable space generated by terms up-to syntactic congruence, and where the measures are indexed by the actions of this new LTS. Finally, we provide a SOS presentation of this stochastic semantics, which is compositional and syntax-driven.

cs.CE↗

arXiv2010

Proceedings 5th International Workshop on Logical Frameworks and Meta-languages: Theory and Practice

Type theories, logical frameworks and meta-languages form a common foundation for designing, implementing, and reasoning about formal languages and their semantics. They are central to the design of modern programming languages, certified software, and domain specific logics. More generally, they continue to influence applications in many areas in mathematics, logic and computer science. The Logical Frameworks and Meta-languages: Theory and Practice workshop aims to bring together designers, implementers, and practitioners working on these areas, and in particular about: the automation and implementation of the meta-theory of programming languages and related calculi; the design of proof assistants, automated theorem provers, and formal digital libraries building upon logical framework technology; theoretical and practical issues concerning the encoding of variable binding and fresh name generation, especially the representation of, and reasoning about, datatypes defined from binding signatures; case studies of meta-programming, and the mechanization of the (meta) theory of descriptions of programming languages and other calculi. This volume contains the final and revised versions of the papers presented at LFMTP 2010, which was held on July 14, 2010 in Edinburgh (UK). LFMTP 2010 was part of the Federated Logic Conference (FLoC 2010), and affilated with LICS 2010.

cs.LO↗

arXiv2009

Bigraphical models for protein and membrane interactions

We present a bigraphical framework suited for modeling biological systems both at protein level and at membrane level. We characterize formally bigraphs corresponding to biologically meaningful systems, and bigraphic rewriting rules representing biologically admissible interactions. At the protein level, these bigraphic reactive systems correspond exactly to systems of kappa-calculus. Membrane-level interactions are represented by just two general rules, whose application can be triggered by protein-level interactions in a well-deïned and precise way. This framework can be used to compare and merge models at different abstraction levels; in particular, higher-level (e.g. mobility) activities can be given a formal biological justification in terms of low-level (i.e., protein) interactions. As examples, we formalize in our framework the vesiculation and the phagocytosis processes.

cs.CE↗

arXiv2009

A framework for protein and membrane interactions

We introduce the BioBeta Framework, a meta-model for both protein-level and membrane-level interactions of living cells. This formalism aims to provide a formal setting where to encode, compare and merge models at different abstraction levels; in particular, higher-level (e.g. membrane) activities can be given a formal biological justification in terms of low-level (i.e., protein) interactions. A BioBeta specification provides a protein signature together a set of protein reactions, in the spirit of the kappa-calculus. Moreover, the specification describes when a protein configuration triggers one of the only two membrane interaction allowed, that is "pinch" and "fuse". In this paper we define the syntax and semantics of BioBeta, analyse its properties, give it an interpretation as biobigraphical reactive systems, and discuss its expressivity by comparing with kappa-calculus and modelling significant examples. Notably, BioBeta has been designed after a bigraphical metamodel for the same purposes. Hence, each instance of the calculus corresponds to a bigraphical reactive system, and vice versa (almost). Therefore, we can inherith the rich theory of bigraphs, such as the automatic construction of labelled transition systems and behavioural congruences.

cs.CE↗

arXiv1998

A Natural Deduction style proof system for propositional $μ$-calculus and its formalization in inductive type theories

In this paper, we present a formalization of Kozen's propositional modal $μ$-calculus, in the Calculus of Inductive Constructions. We address several problematic issues, such as the use of higher-order abstract syntax in inductive sets in presence of recursive constructors, the encoding of modal (``proof'') rules and of context sensitive grammars. The encoding can be used in the \Coq system, providing an experimental computer-aided proof environment for the interactive development of error-free proofs in the $μ$-calculus. The techniques we adopted can be readily ported to other languages and proof systems featuring similar problematic issues.

cs.LO↗