arXiv subjects

Mario U. Gaimann

Publications and source records attributed to Mario U. Gaimann.

5 recordsLinked to original sources

arXiv2026

Entropy production of active matter systems as indicator for computing performance

Physical systems can process information through their natural dynamics, offering alternatives to conventional digital computing. Reservoir computing offers a basic framework by using a nonlinear substrate to map inputs into rich dynamical states read out by a simple linear layer. Active matter substrates are striking examples; they continuously consume energy and produce entropy. Theoretically, entropy production (EP) can describe the irreversibility and distance from equilibrium. But it remains unclear whether it can track computational capabilities. We address this conceptual gap by analyzing a driven swarm reservoir model. The system EP is computed from phase-space contraction and the bath EP from heat flow, separately, and put in direct association to prediction performance on a Lorenz-63 task. Via force parameter scans, we show that dynamical regimes with the strongest response to a driver as well as dissipation coincide with peak performance. Therein, the dynamical discrepancy between innate (minimal dissipation) and driven transferred heat (maximal dissipation) is sharpest. Generally, driver work and relative differences of driven and undriven EP closely mirror the performance landscape. The system EP, derived from a generalized Liouville-equation estimator, and heat flow provide complementary diagnostics and metrics, which are most robust in the best-performing regime. These results extend prior expectations that dissipation matters for computation by identifying when and how it becomes predictive. They also relate inference power to innate dynamics, pointing to generic principles for physical computing and where EP offers a screening metric for reservoirs and other base substrates.

cond-mat.stat-mech↗

arXiv2026

Optimal information injection and transfer mechanisms for active matter reservoir computing

Reservoir computing (RC) is a state-of-the-art machine learning method that makes use of the power of dynamical systems (the reservoir) for real-time inference. When using biological complex systems as reservoir substrates, it serves as a testbed for basic questions about bio-inspired computation -- of how self-organization generates proper spatiotemporal patterning. Here, we use a simulation of an active matter system, driven by a chaotically moving input signal, as a reservoir. So far, it has been unclear whether such complex systems possess the capacity to process information efficiently and independently of the method by which it was introduced. We find that when switching from a repulsive to an attractive driving force, the system completely changes the way it computes, while the predictive performance landscapes remain nearly identical. The nonlinearity of the driver's injection force improves computation by decoupling the single-agent dynamics from that of the driver. Triggered are the (re-)growth, deformation, and active motion of smooth structural boundaries (interfaces), and the emergence of coherent gradients in speed -- features found in many soft materials and biological systems. The nonlinear driving force activates emergent regulatory mechanisms, which manifest enhanced morphological and dynamic diversity -- arguably improving fading memory, nonlinearity, expressivity, and thus, performance. We further perform RC in a broad variety of non-equilibrium active matter phases that arise when tuning internal (repulsive) forces for information transfer. Overall, we find that active matter agents forming liquid droplets are particularly well suited for RC. The consistently convex shape of the predictive performance landscapes, together with the observed phenomenological richness, conveys robustness and adaptivity.

nlin.AO↗

arXiv2026

Robustly optimal dynamics for active matter reservoir computing

Information processing abilities of active matter are studied in the reservoir computing (RC) paradigm to infer the future state of a chaotic signal. We uncover an exceptional regime of agent dynamics that has been overlooked previously. It appears robustly optimal for performance under many conditions, thus providing valuable insights into computation with physical systems more generally. The key to forming effective mechanisms for information processing appears in the system's intrinsic relaxation abilities. These are probed without actually enforcing a specific inference goal. The dynamical regime that achieves optimal computation is located just below a critical damping threshold, involving a relaxation with multiple stages, and is readable at the single-particle level. At the many-body level, it yields substrates robustly optimal for RC across varying physical parameters and inference tasks. A system in this regime exhibits a strong diversity of dynamic mechanisms under highly fluctuating driving forces. Correlations of agent dynamics can express a tight relationship between the responding system and the fluctuating forces driving it. As this model is interpretable in physical terms, it facilitates re-framing inquiries regarding learning and unconventional computing with a fresh rationale for many-body physics out of equilibrium.

nlin.AO↗

arXiv2020

Early life imprints the hierarchy of T cell clone sizes

The adaptive immune system responds to pathogens by selecting clones of cells with specific receptors. While clonal selection in response to particular antigens has been studied in detail, it is unknown how a lifetime of exposures to many antigens collectively shape the immune repertoire. Here, through mathematical modeling and statistical analyses of T cell receptor sequencing data we demonstrate that clonal expansions during a perinatal time window leave a long-lasting imprint on the human T cell repertoire. We demonstrate how the empirical scaling law relating the rank of the largest clones to their size can emerge from clonal growth during repertoire formation. We statistically identify early founded clones and find that they are indeed highly enriched among the largest clones. This enrichment persists even after decades of human aging, in a way that is quantitatively predicted by a model of fluctuating clonal selection. Our work presents a quantitative theory of human T cell dynamics compatible with the statistical laws of repertoire organization and provides a mechanism for how early clonal dynamics imprint the hierarchy of T cell clone sizes with implications for pathogen defense and autoimmunity.

q-bio.PE↗

arXiv2019

Insights from Molecular Dynamics Simulations on Structural Organization and Diffusive Dynamics of an Ionic Liquid at Solid and Vacuum Interfaces

Hypothesis A prototypical modelling approach is required for a full characterisation of the static and equilibrium dynamical properties of confined ionic liquids (ILs), in order to gain predictive power of properties that are difficult to extract from experiments. Such a protocol needs to be constructed by benchmarking molecular dynamics simulations against available experiments. Simulations We perform an in-depth study of [C2Mim][NTf2] in bulk, at the vacuum and at hydroxylated alumina surface. Using the charge methods CHelpG, RESP-HF and RESP-B3LYP with charge scaling factors 1.0, 0.9 and 0.85, we search for an optimum non-polarizable force field by benchmarking against self-diffusion coefficients, surface tension, X-ray reflectivity data, and structural data. Findings Benchmarking, which relies on establishing the significance of an appropriate size of the model systems and the length of the simulations, yields RESP-HF/0.9 as the best suited force field for this IL overall. A complete and accurate characterisation of the spatially-dependent internal configurational space and orientation of IL molecules relative to the solid and vacuum interfaces is obtained. Furthermore, the density and mobility of IL ions in the plane parallel and normal to the interfaces is evaluated and the correlation between the stratification and dynamics in the interfacial layers is detectable deep into the films.

cond-mat.mtrl-sci↗