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Mark C Palenik

Publications and source records attributed to Mark C Palenik.

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Initial estimate for minimum energy pathways and transition states using velocities in internal coordinates

Many algorithms for finding reaction pathways require an initial estimate of the minimum energy path (MEP). Most estimation methods use a variational approach and thus must be seeded from an even simpler path, such as one generated by Cartesian interpolation. Often, care must be taken to avoid atomic intersections in this seed path, and the estimator itself may potentially converge to multiple undesirable local minima. As an alternative we form an initial estimate by numerically integrating a velocity vector field that is projected from redundant internal coordinates into the Cartesian manifold. We compare this method to the image dependent pair potential, the geodesic method, and linear Cartesian interpolation using three test cases: the rotation of a methyl group in ethane, HCN$\to$HNC tautomerization, and HONO elimination from dimethylnitramine. In the first test case, a zero-temperature string calculation seeded with our method converges to the MEP in significantly fewer geometry and SCF cycles than any of the others, while in the second, only the geodesic method slightly outperformed ours. In the third test case, we used the midpoint of each path as an initial guess for a transition state calculation. Our midpoint was geometrically the closest to the true transition state and converged in the fewest geometry and SCF cycles.

physics.chem-ph

Variationally fitting the total electron-electron interaction

Density fitting is used throughout quantum chemistry to simplify the electron-electron interaction energy (EE). A fundamental property of quantum chemistry, and DFT in particular, is that a variational principle connects the EE to a potential. Density fitting generally does not preserve this connection. Herein, we describe the construction of a robust EE that is variationally connected to fitted potentials in all electronic structure methods. For DFT, this results in new fitting equations which are satisfied at an energy saddle point in multidimensional fitting space.

cond-mat.mtrl-sci

The Variationally Fitted Electron-Electron Potential

Perhaps the simplest first-principles approach to electronic structure is to fit the charge distribution of each orbital pair and use those fits wherever they appear in the entire electron-electron (EE) interaction energy. The charge distributions in quantum chemistry are typically represented as a sums over products of Gaussian orbital basis functions. If fitted, they are also represented as a sum over single-center Gaussian fitting basis functions. With two representations of the charge distributions, the proper definition of energy is ambiguous. To remedy this, we require that the variation of the energy with respect to a product of orbitals generates a fitted potential. This makes the quantum-mechanical energy robust, i.e. corrected to first order for the error made using an incomplete fitting basis. The coupled orbital and fitting equations are then the result of making the energy stationary with respect to two independent sets of variables. We define the potentials and unique energies for methods based on the Hartree Fock model and variationally fit the full EE interaction in DFT. We compare implementations of variational fitting in DFT at six different levels for three different functionals. Our calculations are performed on transition metal atoms, for which first-order Coulomb errors, due to an incomplete fitting basis sets, are significant. Variational first-order exchange and correlation errors have similar magnitude in all cases. Robust energy differences are much smaller, particularly in the local density approximation.

physics.chem-ph