arXiv subjects

Mark Coates

Publications and source records attributed to Mark Coates.

At least 73 records · Page 4Linked to original sources

arXiv2022

Node Copying: A Random Graph Model for Effective Graph Sampling

There has been an increased interest in applying machine learning techniques on relational structured-data based on an observed graph. Often, this graph is not fully representative of the true relationship amongst nodes. In these settings, building a generative model conditioned on the observed graph allows to take the graph uncertainty into account. Various existing techniques either rely on restrictive assumptions, fail to preserve topological properties within the samples or are prohibitively expensive for larger graphs. In this work, we introduce the node copying model for constructing a distribution over graphs. Sampling of a random graph is carried out by replacing each node's neighbors by those of a randomly sampled similar node. The sampled graphs preserve key characteristics of the graph structure without explicitly targeting them. Additionally, sampling from this model is extremely simple and scales linearly with the nodes. We show the usefulness of the copying model in three tasks. First, in node classification, a Bayesian formulation based on node copying achieves higher accuracy in sparse data settings. Second, we employ our proposed model to mitigate the effect of adversarial attacks on the graph topology. Last, incorporation of the model in a recommendation system setting improves recall over state-of-the-art methods.

stat.ML↗

arXiv2022

Bag Graph: Multiple Instance Learning using Bayesian Graph Neural Networks

Multiple Instance Learning (MIL) is a weakly supervised learning problem where the aim is to assign labels to sets or bags of instances, as opposed to traditional supervised learning where each instance is assumed to be independent and identically distributed (IID) and is to be labeled individually. Recent work has shown promising results for neural network models in the MIL setting. Instead of focusing on each instance, these models are trained in an end-to-end fashion to learn effective bag-level representations by suitably combining permutation invariant pooling techniques with neural architectures. In this paper, we consider modelling the interactions between bags using a graph and employ Graph Neural Networks (GNNs) to facilitate end-to-end learning. Since a meaningful graph representing dependencies between bags is rarely available, we propose to use a Bayesian GNN framework that can generate a likely graph structure for scenarios where there is uncertainty in the graph or when no graph is available. Empirical results demonstrate the efficacy of the proposed technique for several MIL benchmark tasks and a distribution regression task.

cs.LG↗

arXiv2022

Multi-relation Message Passing for Multi-label Text Classification

A well-known challenge associated with the multi-label classification problem is modelling dependencies between labels. Most attempts at modelling label dependencies focus on co-occurrences, ignoring the valuable information that can be extracted by detecting label subsets that rarely occur together. For example, consider customer product reviews; a product probably would not simultaneously be tagged by both "recommended" (i.e., reviewer is happy and recommends the product) and "urgent" (i.e., the review suggests immediate action to remedy an unsatisfactory experience). Aside from the consideration of positive and negative dependencies, the direction of a relationship should also be considered. For a multi-label image classification problem, the "ship" and "sea" labels have an obvious dependency, but the presence of the former implies the latter much more strongly than the other way around. These examples motivate the modelling of multiple types of bi-directional relationships between labels. In this paper, we propose a novel method, entitled Multi-relation Message Passing (MrMP), for the multi-label classification problem. Experiments on benchmark multi-label text classification datasets show that the MrMP module yields similar or superior performance compared to state-of-the-art methods. The approach imposes only minor additional computational and memory overheads.

cs.LG↗

arXiv2022

Spectral image clustering on dual-energy CT scans using functional regression mixtures

Dual-energy computed tomography (DECT) is an advanced CT scanning technique enabling material characterization not possible with conventional CT scans. It allows the reconstruction of energy decay curves at each 3D image voxel, representing varying image attenuation at different effective scanning energy levels. In this paper, we develop novel functional data analysis (FDA) techniques and adapt them to the analysis of DECT decay curves. More specifically, we construct functional mixture models that integrate spatial context in mixture weights, with mixture component densities being constructed upon the energy decay curves as functional observations. We design unsupervised clustering algorithms by developing dedicated expectation maximization (EM) algorithms for the maximum likelihood estimation of the model parameters. To our knowledge, this is the first article to adapt statistical FDA tools and model-based clustering to take advantage of the full spectral information provided by DECT. We evaluate our methods on 91 head and neck cancer DECT scans. We compare our unsupervised clustering results to tumor contours traced manually by radiologists, as well as to several baseline algorithms. Given the inter-rater variability even among experts at delineating head and neck tumors, and given the potential importance of tissue reactions surrounding the tumor itself, our proposed methodology has the potential to add value in downstream machine learning applications for clinical outcome prediction based on DECT data in head and neck cancer.

eess.IV↗

arXiv2021

Generalizable Cross-Graph Embedding for GNN-based Congestion Prediction

Presently with technology node scaling, an accurate prediction model at early design stages can significantly reduce the design cycle. Especially during logic synthesis, predicting cell congestion due to improper logic combination can reduce the burden of subsequent physical implementations. There have been attempts using Graph Neural Network (GNN) techniques to tackle congestion prediction during the logic synthesis stage. However, they require informative cell features to achieve reasonable performance since the core idea of GNNs is built on the message passing framework, which would be impractical at the early logic synthesis stage. To address this limitation, we propose a framework that can directly learn embeddings for the given netlist to enhance the quality of our node features. Popular random-walk based embedding methods such as Node2vec, LINE, and DeepWalk suffer from the issue of cross-graph alignment and poor generalization to unseen netlist graphs, yielding inferior performance and costing significant runtime. In our framework, we introduce a superior alternative to obtain node embeddings that can generalize across netlist graphs using matrix factorization methods. We propose an efficient mini-batch training method at the sub-graph level that can guarantee parallel training and satisfy the memory restriction for large-scale netlists. We present results utilizing open-source EDA tools such as DREAMPLACE and OPENROAD frameworks on a variety of openly available circuits. By combining the learned embedding on top of the netlist with the GNNs, our method improves prediction performance, generalizes to new circuit lines, and is efficient in training, potentially saving over $90 \%$ of runtime.

cs.LG↗

arXiv2021

RNN with Particle Flow for Probabilistic Spatio-temporal Forecasting

Spatio-temporal forecasting has numerous applications in analyzing wireless, traffic, and financial networks. Many classical statistical models often fall short in handling the complexity and high non-linearity present in time-series data. Recent advances in deep learning allow for better modelling of spatial and temporal dependencies. While most of these models focus on obtaining accurate point forecasts, they do not characterize the prediction uncertainty. In this work, we consider the time-series data as a random realization from a nonlinear state-space model and target Bayesian inference of the hidden states for probabilistic forecasting. We use particle flow as the tool for approximating the posterior distribution of the states, as it is shown to be highly effective in complex, high-dimensional settings. Thorough experimentation on several real world time-series datasets demonstrates that our approach provides better characterization of uncertainty while maintaining comparable accuracy to the state-of-the art point forecasting methods.

stat.ML↗

arXiv2021

TIE: A Framework for Embedding-based Incremental Temporal Knowledge Graph Completion

Reasoning in a temporal knowledge graph (TKG) is a critical task for information retrieval and semantic search. It is particularly challenging when the TKG is updated frequently. The model has to adapt to changes in the TKG for efficient training and inference while preserving its performance on historical knowledge. Recent work approaches TKG completion (TKGC) by augmenting the encoder-decoder framework with a time-aware encoding function. However, naively fine-tuning the model at every time step using these methods does not address the problems of 1) catastrophic forgetting, 2) the model's inability to identify the change of facts (e.g., the change of the political affiliation and end of a marriage), and 3) the lack of training efficiency. To address these challenges, we present the Time-aware Incremental Embedding (TIE) framework, which combines TKG representation learning, experience replay, and temporal regularization. We introduce a set of metrics that characterizes the intransigence of the model and propose a constraint that associates the deleted facts with negative labels. Experimental results on Wikidata12k and YAGO11k datasets demonstrate that the proposed TIE framework reduces training time by about ten times and improves on the proposed metrics compared to vanilla full-batch training. It comes without a significant loss in performance for any traditional measures. Extensive ablation studies reveal performance trade-offs among different evaluation metrics, which is essential for decision-making around real-world TKG applications.

cs.AI↗

arXiv2021

Knowledge-Enhanced Top-K Recommendation in Poincaré Ball

Personalized recommender systems are increasingly important as more content and services become available and users struggle to identify what might interest them. Thanks to the ability for providing rich information, knowledge graphs (KGs) are being incorporated to enhance the recommendation performance and interpretability. To effectively make use of the knowledge graph, we propose a recommendation model in the hyperbolic space, which facilitates the learning of the hierarchical structure of knowledge graphs. Furthermore, a hyperbolic attention network is employed to determine the relative importances of neighboring entities of a certain item. In addition, we propose an adaptive and fine-grained regularization mechanism to adaptively regularize items and their neighboring representations. Via a comparison using three real-world datasets with state-of-the-art methods, we show that the proposed model outperforms the best existing models by 2-16% in terms of NDCG@K on Top-K recommendation.

cs.IR↗

arXiv2021

Probabilistic Metric Learning with Adaptive Margin for Top-K Recommendation

Personalized recommender systems are playing an increasingly important role as more content and services become available and users struggle to identify what might interest them. Although matrix factorization and deep learning based methods have proved effective in user preference modeling, they violate the triangle inequality and fail to capture fine-grained preference information. To tackle this, we develop a distance-based recommendation model with several novel aspects: (i) each user and item are parameterized by Gaussian distributions to capture the learning uncertainties; (ii) an adaptive margin generation scheme is proposed to generate the margins regarding different training triplets; (iii) explicit user-user/item-item similarity modeling is incorporated in the objective function. The Wasserstein distance is employed to determine preferences because it obeys the triangle inequality and can measure the distance between probabilistic distributions. Via a comparison using five real-world datasets with state-of-the-art methods, the proposed model outperforms the best existing models by 4-22% in terms of recall@K on Top-K recommendation.

cs.IR↗

arXiv2020

GraphSeam: Supervised Graph Learning Framework for Semantic UV Mapping

Recently there has been a significant effort to automate UV mapping, the process of mapping 3D-dimensional surfaces to the UV space while minimizing distortion and seam length. Although state-of-the-art methods, Autocuts and OptCuts, addressed this task via energy-minimization approaches, they fail to produce semantic seam styles, an essential factor for professional artists. The recent emergence of Graph Neural Networks (GNNs), and the fact that a mesh can be represented as a particular form of a graph, has opened a new bridge to novel graph learning-based solutions in the computer graphics domain. In this work, we use the power of supervised GNNs for the first time to propose a fully automated UV mapping framework that enables users to replicate their desired seam styles while reducing distortion and seam length. To this end, we provide augmentation and decimation tools to enable artists to create their dataset and train the network to produce their desired seam style. We provide a complementary post-processing approach for reducing the distortion based on graph algorithms to refine low-confidence seam predictions and reduce seam length (or the number of shells in our supervised case) using a skeletonization method.

cs.GR↗

arXiv2020

Learning Gaussian Graphical Models with Ordered Weighted L1 Regularization

We address the task of identifying densely connected subsets of multivariate Gaussian random variables within a graphical model framework. We propose two novel estimators based on the Ordered Weighted $\ell_1$ (OWL) norm: 1) The Graphical OWL (GOWL) is a penalized likelihood method that applies the OWL norm to the lower triangle components of the precision matrix. 2) The column-by-column Graphical OWL (ccGOWL) estimates the precision matrix by performing OWL regularized linear regressions. Both methods can simultaneously identify highly correlated groups of variables and control the sparsity in the resulting precision matrix. We formulate GOWL such that it solves a composite optimization problem and establish that the estimator has a unique global solution. In addition, we prove sufficient grouping conditions for each column of the ccGOWL precision matrix estimate. We propose proximal descent algorithms to find the optimum for both estimators. For synthetic data where group structure is present, the ccGOWL estimator requires significantly reduced computation and achieves similar or greater accuracy than state-of-the-art estimators. Timing comparisons are presented and demonstrates the superior computational efficiency of the ccGOWL. We illustrate the grouping performance of the ccGOWL method on a cancer gene expression data set and an equities data set.

stat.ML↗

arXiv2020

GraphSAIL: Graph Structure Aware Incremental Learning for Recommender Systems

Given the convenience of collecting information through online services, recommender systems now consume large scale data and play a more important role in improving user experience. With the recent emergence of Graph Neural Networks (GNNs), GNN-based recommender models have shown the advantage of modeling the recommender system as a user-item bipartite graph to learn representations of users and items. However, such models are expensive to train and difficult to perform frequent updates to provide the most up-to-date recommendations. In this work, we propose to update GNN-based recommender models incrementally so that the computation time can be greatly reduced and models can be updated more frequently. We develop a Graph Structure Aware Incremental Learning framework, GraphSAIL, to address the commonly experienced catastrophic forgetting problem that occurs when training a model in an incremental fashion. Our approach preserves a user's long-term preference (or an item's long-term property) during incremental model updating. GraphSAIL implements a graph structure preservation strategy which explicitly preserves each node's local structure, global structure, and self-information, respectively. We argue that our incremental training framework is the first attempt tailored for GNN based recommender systems and demonstrate its improvement compared to other incremental learning techniques on two public datasets. We further verify the effectiveness of our framework on a large-scale industrial dataset.

cs.IR↗

arXiv2020

Active Learning on Attributed Graphs via Graph Cognizant Logistic Regression and Preemptive Query Generation

Node classification in attributed graphs is an important task in multiple practical settings, but it can often be difficult or expensive to obtain labels. Active learning can improve the achieved classification performance for a given budget on the number of queried labels. The best existing methods are based on graph neural networks, but they often perform poorly unless a sizeable validation set of labelled nodes is available in order to choose good hyperparameters. We propose a novel graph-based active learning algorithm for the task of node classification in attributed graphs; our algorithm uses graph cognizant logistic regression, equivalent to a linearized graph convolutional neural network (GCN), for the prediction phase and maximizes the expected error reduction in the query phase. To reduce the delay experienced by a labeller interacting with the system, we derive a preemptive querying system that calculates a new query during the labelling process, and to address the setting where learning starts with almost no labelled data, we also develop a hybrid algorithm that performs adaptive model averaging of label propagation and linearized GCN inference. We conduct experiments on five public benchmark datasets, demonstrating a significant improvement over state-of-the-art approaches and illustrate the practical value of the method by applying it to a private microwave link network dataset.

cs.LG↗

arXiv2020

Node Copying for Protection Against Graph Neural Network Topology Attacks

Adversarial attacks can affect the performance of existing deep learning models. With the increased interest in graph based machine learning techniques, there have been investigations which suggest that these models are also vulnerable to attacks. In particular, corruptions of the graph topology can degrade the performance of graph based learning algorithms severely. This is due to the fact that the prediction capability of these algorithms relies mostly on the similarity structure imposed by the graph connectivity. Therefore, detecting the location of the corruption and correcting the induced errors becomes crucial. There has been some recent work which tackles the detection problem, however these methods do not address the effect of the attack on the downstream learning task. In this work, we propose an algorithm that uses node copying to mitigate the degradation in classification that is caused by adversarial attacks. The proposed methodology is applied only after the model for the downstream task is trained and the added computation cost scales well for large graphs. Experimental results show the effectiveness of our approach for several real world datasets.

cs.LG↗

arXiv2020

Non-Parametric Graph Learning for Bayesian Graph Neural Networks

Graphs are ubiquitous in modelling relational structures. Recent endeavours in machine learning for graph-structured data have led to many architectures and learning algorithms. However, the graph used by these algorithms is often constructed based on inaccurate modelling assumptions and/or noisy data. As a result, it fails to represent the true relationships between nodes. A Bayesian framework which targets posterior inference of the graph by considering it as a random quantity can be beneficial. In this paper, we propose a novel non-parametric graph model for constructing the posterior distribution of graph adjacency matrices. The proposed model is flexible in the sense that it can effectively take into account the output of graph-based learning algorithms that target specific tasks. In addition, model inference scales well to large graphs. We demonstrate the advantages of this model in three different problem settings: node classification, link prediction and recommendation.

stat.ML↗

arXiv2020

Multi-Graph Convolution Collaborative Filtering

Personalized recommendation is ubiquitous, playing an important role in many online services. Substantial research has been dedicated to learning vector representations of users and items with the goal of predicting a user's preference for an item based on the similarity of the representations. Techniques range from classic matrix factorization to more recent deep learning based methods. However, we argue that existing methods do not make full use of the information that is available from user-item interaction data and the similarities between user pairs and item pairs. In this work, we develop a graph convolution-based recommendation framework, named Multi-Graph Convolution Collaborative Filtering (Multi-GCCF), which explicitly incorporates multiple graphs in the embedding learning process. Multi-GCCF not only expressively models the high-order information via a partite user-item interaction graph, but also integrates the proximal information by building and processing user-user and item-item graphs. Furthermore, we consider the intrinsic difference between user nodes and item nodes when performing graph convolution on the bipartite graph. We conduct extensive experiments on four publicly accessible benchmarks, showing significant improvements relative to several state-of-the-art collaborative filtering and graph neural network-based recommendation models. Further experiments quantitatively verify the effectiveness of each component of our proposed model and demonstrate that the learned embeddings capture the important relationship structure.

cs.IR↗

arXiv2019

Memory Augmented Graph Neural Networks for Sequential Recommendation

The chronological order of user-item interactions can reveal time-evolving and sequential user behaviors in many recommender systems. The items that users will interact with may depend on the items accessed in the past. However, the substantial increase of users and items makes sequential recommender systems still face non-trivial challenges: (1) the hardness of modeling the short-term user interests; (2) the difficulty of capturing the long-term user interests; (3) the effective modeling of item co-occurrence patterns. To tackle these challenges, we propose a memory augmented graph neural network (MA-GNN) to capture both the long- and short-term user interests. Specifically, we apply a graph neural network to model the item contextual information within a short-term period and utilize a shared memory network to capture the long-range dependencies between items. In addition to the modeling of user interests, we employ a bilinear function to capture the co-occurrence patterns of related items. We extensively evaluate our model on five real-world datasets, comparing with several state-of-the-art methods and using a variety of performance metrics. The experimental results demonstrate the effectiveness of our model for the task of Top-K sequential recommendation.

cs.IR↗

arXiv2019

Bayesian Graph Convolutional Neural Networks using Node Copying

Graph convolutional neural networks (GCNN) have numerous applications in different graph based learning tasks. Although the techniques obtain impressive results, they often fall short in accounting for the uncertainty associated with the underlying graph structure. In the recently proposed Bayesian GCNN (BGCN) framework, this issue is tackled by viewing the observed graph as a sample from a parametric random graph model and targeting joint inference of the graph and the GCNN weights. In this paper, we introduce an alternative generative model for graphs based on copying nodes and incorporate it within the BGCN framework. Our approach has the benefit that it uses information provided by the node features and training labels in the graph topology inference. Experiments show that the proposed algorithm compares favorably to the state-of-the-art in benchmark node classification tasks.

cs.LG↗