arXiv subjects

Mark Roantree

Publications and source records attributed to Mark Roantree.

15 recordsLinked to original sources

arXiv2026

CA20108 COST Action: A Methodology for Developing FAIR Micrometeorological Networks

This article reports the outcomes of the FAIRNESS COST Action (CA20108), a coordinated European initiative aimed at advancing micrometeorological data toward compliance with the FAIR (Findable, Accessible, Interoperable, Reusable) principles. The article presents three core achievements: (i) a structured inventory of urban and rural micrometeorological networks across Europe; (ii) the design and deployment of the FAIR Micrometeorological Portal, providing a digital infrastructure for data discovery, access, and standardized metadata description; and (iii) methodological guidance for quality control, gap detection, and gap filling tailored to the specific characteristics of micrometeorological time series. By providing both technical infrastructure and community-driven standards, the FAIRNESS outputs advance micrometeorological data from isolated datasets into coherent, reusable resources. Beyond technical developments, the FAIRNESS systematically addressed gaps in knowledge and skills within the micrometeorological community. A key outcome is the beginner-oriented book Micrometeorological Measurements - An Introduction for Beginners, which provides structured guidance on measurement design, instrumentation, data management, and quality assurance. In parallel, FAIRNESS implemented a comprehensive capacity-building programme, including summer schools, workshops, and short-term scientific missions, targeting both domain-specific competencies and transferable skills such as FAIR data stewardship, interdisciplinary collaboration, and practical problem solving. Together, these efforts contribute to strengthening the long-term usability of micrometeorological data and fostering a more integrated, FAIR-oriented research culture within the European meteorological community.

cs.DL↗

arXiv2026

An Efficient Hybrid Deep Learning Approach for Detecting Online Abusive Language

The digital age has expanded social media and online forums, allowing free expression for nearly 45% of the global population. Yet, it has also fueled online harassment, bullying, and harmful behaviors like hate speech and toxic comments across social networks, messaging apps, and gaming communities. Studies show 65% of parents notice hostile online behavior, and one-third of adolescents in mobile games experience bullying. A substantial volume of abusive content is generated and shared daily, not only on the surface web but also within dark web forums. Creators of abusive comments often employ specific words or coded phrases to evade detection and conceal their intentions. To address these challenges, we propose a hybrid deep learning model that integrates BERT, CNN, and LSTM architectures with a ReLU activation function to detect abusive language across multiple online platforms, including YouTube comments, online forum discussions, and dark web posts. The model demonstrates strong performance on a diverse and imbalanced dataset containing 77,620 abusive and 272,214 non-abusive text samples (ratio 1:3.5), achieving approximately 99% across evaluation metrics such as Precision, Recall, Accuracy, F1-score, and AUC. This approach effectively captures semantic, contextual, and sequential patterns in text, enabling robust detection of abusive content even in highly skewed datasets, as encountered in real-world scenarios.

cs.CL↗

arXiv2025

Applying Time Series Deep Learning Models to Forecast the Growth of Perennial Ryegrass in Ireland

Grasslands, constituting the world's second-largest terrestrial carbon sink, play a crucial role in biodiversity and the regulation of the carbon cycle. Currently, the Irish dairy sector, a significant economic contributor, grapples with challenges related to profitability and sustainability. Presently, grass growth forecasting relies on impractical mechanistic models. In response, we propose deep learning models tailored for univariate datasets, presenting cost-effective alternatives. Notably, a temporal convolutional network designed for forecasting Perennial Ryegrass growth in Cork exhibits high performance, leveraging historical grass height data with RMSE of 2.74 and MAE of 3.46. Validation across a comprehensive dataset spanning 1,757 weeks over 34 years provides insights into optimal model configurations. This study enhances our understanding of model behavior, thereby improving reliability in grass growth forecasting and contributing to the advancement of sustainable dairy farming practices.

cs.LG↗

arXiv2025

An Enhanced Dual Transformer Contrastive Network for Multimodal Sentiment Analysis

Multimodal Sentiment Analysis (MSA) seeks to understand human emotions by jointly analyzing data from multiple modalities typically text and images offering a richer and more accurate interpretation than unimodal approaches. In this paper, we first propose BERT-ViT-EF, a novel model that combines powerful Transformer-based encoders BERT for textual input and ViT for visual input through an early fusion strategy. This approach facilitates deeper cross-modal interactions and more effective joint representation learning. To further enhance the model's capability, we propose an extension called the Dual Transformer Contrastive Network (DTCN), which builds upon BERT-ViT-EF. DTCN incorporates an additional Transformer encoder layer after BERT to refine textual context (before fusion) and employs contrastive learning to align text and image representations, fostering robust multimodal feature learning. Empirical results on two widely used MSA benchmarks MVSA-Single and TumEmo demonstrate the effectiveness of our approach. DTCN achieves best accuracy (78.4%) and F1-score (78.3%) on TumEmo, and delivers competitive performance on MVSA-Single, with 76.6% accuracy and 75.9% F1-score. These improvements highlight the benefits of early fusion and deeper contextual modeling in Transformer-based multimodal sentiment analysis.

cs.LG↗

arXiv2025

Enhancing Bagging Ensemble Regression with Data Integration for Time Series-Based Diabetes Prediction

Diabetes is a chronic metabolic disease characterized by elevated blood glucose levels, leading to complications like heart disease, kidney failure, and nerve damage. Accurate state-level predictions are vital for effective healthcare planning and targeted interventions, but in many cases, data for necessary analyses are incomplete. This study begins with a data engineering process to integrate diabetes-related datasets from 2011 to 2021 to create a comprehensive feature set. We then introduce an enhanced bagging ensemble regression model (EBMBag+) for time series forecasting to predict diabetes prevalence across U.S. cities. Several baseline models, including SVMReg, BDTree, LSBoost, NN, LSTM, and ERMBag, were evaluated for comparison with our EBMBag+ algorithm. The experimental results demonstrate that EBMBag+ achieved the best performance, with an MAE of 0.41, RMSE of 0.53, MAPE of 4.01, and an R2 of 0.9.

cs.LG↗

arXiv2025

A Graph Based Raman Spectral Processing Technique for Exosome Classification

Exosomes are small vesicles crucial for cell signaling and disease biomarkers. Due to their complexity, an "omics" approach is preferable to individual biomarkers. While Raman spectroscopy is effective for exosome analysis, it requires high sample concentrations and has limited sensitivity to lipids and proteins. Surface-enhanced Raman spectroscopy helps overcome these challenges. In this study, we leverage Neo4j graph databases to organize 3,045 Raman spectra of exosomes, enhancing data generalization. To further refine spectral analysis, we introduce a novel spectral filtering process that integrates the PageRank Filter with optimal Dimensionality Reduction. This method improves feature selection, resulting in superior classification performance. Specifically, the Extra Trees model, using our spectral processing approach, achieves 0.76 and 0.857 accuracy in classifying hyperglycemic, hypoglycemic, and normal exosome samples based on Raman spectra and surface, respectively, with group 10-fold cross-validation. Our results show that graph-based spectral filtering combined with optimal dimensionality reduction significantly improves classification accuracy by reducing noise while preserving key biomarker signals. This novel framework enhances Raman-based exosome analysis, expanding its potential for biomedical applications, disease diagnostics, and biomarker discovery.

q-bio.QM↗

arXiv2025

Developing a Dyslexia Indicator Using Eye Tracking

Dyslexia, affecting an estimated 10% to 20% of the global population, significantly impairs learning capabilities, highlighting the need for innovative and accessible diagnostic methods. This paper investigates the effectiveness of eye-tracking technology combined with machine learning algorithms as a cost-effective alternative for early dyslexia detection. By analyzing general eye movement patterns, including prolonged fixation durations and erratic saccades, we proposed an enhanced solution for determining eye-tracking-based dyslexia features. A Random Forest Classifier was then employed to detect dyslexia, achieving an accuracy of 88.58\%. Additionally, hierarchical clustering methods were applied to identify varying severity levels of dyslexia. The analysis incorporates diverse methodologies across various populations and settings, demonstrating the potential of this technology to identify individuals with dyslexia, including those with borderline traits, through non-invasive means. Integrating eye-tracking with machine learning represents a significant advancement in the diagnostic process, offering a highly accurate and accessible method in clinical research.

cs.LG↗

arXiv2024

Modelling Mosquito Population Dynamics using PINN-derived Empirical Parameters

Vector-borne diseases continue to pose a significant health threat globally with more than 3 billion people at risk each year. Despite some limitations, mechanistic dynamic models are a popular approach to representing biological processes using ordinary differential equations where the parameters describe the different development and survival rates. Recent advances in population modelling have seen the combination of these mechanistic models with machine learning. One approach is physics-informed neural networks (PINNs) whereby the machine learning framework embeds physical, biological, or chemical laws into neural networks trained on observed or measured data. This enables forward simulations, predicting system behaviour from given parameters and inputs, and inverse modelling, improving parameterisation of existing parameters and estimating unknown or latent variables. In this paper, we focus on improving the parameterisation of biological processes in mechanistic models using PINNs to determine inverse parameters. In comparing mechanistic and PINN models, our experiments offer important insights into the strengths and weaknesses of both approaches but demonstrated that the PINN approach generally outperforms the dynamic model. For a deeper understanding of the performance of PINN models, a final validation was used to investigate how modifications to PINN architectures affect the performance of the framework. By varying only a single component at a time and keeping all other factors constant, we are able to observe the effect of each change.

physics.bio-ph↗

arXiv2024

Query Based Construction of Chronic Disease Datasets

The RECONNECT project addresses the fragmentation of Ireland's public healthcare systems, aiming to enhance service planning and delivery for chronic disease management. By integrating complex systems within the Health Service Executive (HSE), it prioritizes data privacy while supporting future digital resource integration. The methodology encompasses structural integration through a Federated Database design to maintain system autonomy and privacy, semantic integration using a Record Linkage module to facilitate integration without individual identifiers, and the adoption of the HL7-FHIR framework for high interoperability with the national electronic health record (EHR) and the Integrated Information Service (IIS). This innovative approach features a unique architecture for loosely coupled systems and a robust privacy layer. A demonstration system has been implemented to utilize synthetic data from the Hospital Inpatient Enquiry (HIPE), Chronic Disease Management (CDM), Primary Care Reimbursement Service (PCRS) and Retina Screen systems for healthcare queries. Overall, RECONNECT aims to provide timely and effective care, enhance clinical decision-making, and empower policymakers with comprehensive population health insights.

cs.DB↗

arXiv2024

Adapting Physics-Informed Neural Networks to Improve ODE Optimization in Mosquito Population Dynamics

Physics informed neural networks have been gaining popularity due to their unique ability to incorporate physics laws into data-driven models, ensuring that the predictions are not only consistent with empirical data but also align with domain-specific knowledge in the form of physics equations. The integration of physics principles enables the method to require less data while maintaining the robustness of deep learning in modelling complex dynamical systems. However, current PINN frameworks are not sufficiently mature for real-world ODE systems, especially those with extreme multi-scale behavior such as mosquito population dynamical modelling. In this research, we propose a PINN framework with several improvements for forward and inverse problems for ODE systems with a case study application in modelling the dynamics of mosquito populations. The framework tackles the gradient imbalance and stiff problems posed by mosquito ordinary differential equations. The method offers a simple but effective way to resolve the time causality issue in PINNs by gradually expanding the training time domain until it covers entire domain of interest. As part of a robust evaluation, we conduct experiments using simulated data to evaluate the effectiveness of the approach. Preliminary results indicate that physics-informed machine learning holds significant potential for advancing the study of ecological systems.

q-bio.PE↗

arXiv2024

A Framework for Spatio-Temporal Graph Analytics In Field Sports

The global sports analytics industry has a market value of USD 3.78 billion in 2023. The increase of wearables such as GPS sensors has provided analysts with large fine-grained datasets detailing player performance. Traditional analysis of this data focuses on individual athletes with measures of internal and external loading such as distance covered in speed zones or rate of perceived exertion. However these metrics do not provide enough information to understand team dynamics within field sports. The spatio-temporal nature of match play necessitates an investment in date-engineering to adequately transform the data into a suitable format to extract features such as areas of activity. In this paper we present an approach to construct Time-Window Spatial Activity Graphs (TWGs) for field sports. Using GPS data obtained from Gaelic Football matches we demonstrate how our approach can be utilised to extract spatio-temporal features from GPS sensor data

cs.CY↗

arXiv2024

Graph-Based Optimisation of Network Expansion in a Dockless Bike Sharing System

Bike-sharing systems (BSSs) are deployed in over a thousand cities worldwide and play an important role in many urban transportation systems. BSSs alleviate congestion, reduce pollution and promote physical exercise. It is essential to explore the spatiotemporal patterns of bike-sharing demand, as well as the factors that influence these patterns, in order to optimise system operational efficiency. In this study, an optimised geo-temporal graph is constructed using trip data from Moby Bikes, a dockless BSS operator. The process of optimising the graph unveiled prime locations for erecting new stations during future expansions of the BSS. The Louvain algorithm, a community detection technique, is employed to uncover usage patterns at different levels of temporal granularity. The community detection results reveal largely self-contained sub-networks that exhibit similar usage patterns at their respective levels of temporal granularity. Overall, this study reinforces that BSSs are intrinsically spatiotemporal systems, with community presence driven by spatiotemporal dynamics. These findings may aid operators in improving redistribution efficiency.

cs.SI↗

arXiv2023

Constructing a Searchable Knowledge Repository for FAIR Climate Data

The development of a knowledge repository for climate science data is a multidisciplinary effort between the domain experts (climate scientists), data engineers whos skills include design and building a knowledge repository, and machine learning researchers who provide expertise on data preparation tasks such as gap filling and advise on different machine learning models that can exploit this data. One of the main goals of the CA20108 cost action is to develop a knowledge portal that is fully compliant with the FAIR principles for scientific data management. In the first year, a bespoke knowledge portal was developed to capture metadata for FAIR datasets. Its purpose was to provide detailed metadata descriptions for shareable \micro data using the WMO standard. While storing Network, Site and Sensor metadata locally, the system passes the actual data to Zenodo, receives back the DOI and thus, creates a permanent link between the Knowledge Portal and the storage platform Zenodo. While the user searches the Knowledge portal (metadata), results provide both detailed descriptions and links to data on the Zenodo platform.

cs.DL↗

arXiv2022

Managing Large Dataset Gaps in Urban Air Quality Prediction: DCU-Insight-AQ at MediaEval 2022

Calculating an Air Quality Index (AQI) typically uses data streams from air quality sensors deployed at fixed locations and the calculation is a real time process. If one or a number of sensors are broken or offline, then the real time AQI value cannot be computed. Estimating AQI values for some point in the future is a predictive process and uses historical AQI values to train and build models. In this work we focus on gap filling in air quality data where the task is to predict the AQI at 1, 5 and 7 days into the future. The scenario is where one or a number of air, weather and traffic sensors are offline and explores prediction accuracy under such situations. The work is part of the MediaEval'2022 Urban Air: Urban Life and Air Pollution task submitted by the DCU-Insight-AQ team and uses multimodal and crossmodal data consisting of AQI, weather and CCTV traffic images for air pollution prediction.

cs.LG↗

arXiv2022

A Framework for Constructing Machine Learning Models with Feature Set Optimisation for Evapotranspiration Partitioning

A deeper understanding of the drivers of evapotranspiration and the modelling of its constituent parts (evaporation and transpiration) could be of significant importance to the monitoring and management of water resources globally over the coming decades. In this work, we developed a framework to identify the best performing machine learning algorithm from a candidate set, select optimal predictive features as well as ranking features in terms of their importance to predictive accuracy. Our experiments used 3 separate feature sets across 4 wetland sites as input into 8 candidate machine learning algorithms, providing 96 sets of experimental configurations. Given this high number of parameters, our results show strong evidence that there is no singularly optimal machine learning algorithm or feature set across all of the wetland sites studied despite their similarities. A key finding discovered when examining feature importance is that methane flux, a feature whose relationship with evapotranspiration is not generally examined, may contribute to further biophysical process understanding.

cs.LG↗