arXiv subjects

Markus Reiher

Publications and source records attributed to Markus Reiher.

At least 91 records · Page 5Linked to original sources

arXiv2020

Nuclear-Electronic All-Particle Density Matrix Renormalization Group

We introduce the Nuclear Electronic All-Particle Density Matrix Renormalization Group (NEAP-DMRG) method for solving the time-independent Schrödinger equation simultaneously for electrons and other quantum species. In contrast to already existing multicomponent approaches, in this work we construct from the outset a multi-reference trial wave function with stochastically optimized non-orthogonal Gaussian orbitals. By iterative refining of the Gaussians' positions and widths, we obtain a compact multi-reference expansion for the multicomponent wave function. We extend the DMRG algorithm to multicomponent wave functions to take into account inter- and intra-species correlation effects. The efficient parametrization of the total wave function as a matrix product state allows NEAP-DMRG to accurately approximate full configuration interaction energies of molecular systems with more than three nuclei and twelve particles in total, which is currently a major challenge for other multicomponent approaches. We present NEAP-DMRG results for two few-body systems, i.e., H$_2$ and H$_3^+$, and one larger system, namely BH$_3$

physics.chem-ph↗

arXiv2020

Hardware Efficient Quantum Algorithms for Vibrational Structure Calculations

We introduce a framework for the calculation of ground and excited state energies of bosonic systems suitable for near-term quantum devices and apply it to molecular vibrational anharmonic Hamiltonians. Our method supports generic reference modal bases and Hamiltonian representations, including the ones that are routinely used in classical vibrational structure calculations. We test different parametrizations of the vibrational wave function, which can be encoded in quantum hardware, based either on heuristic circuits or on the bosonic Unitary Coupled Cluster Ansatz. In particular, we define a novel compact heuristic circuit and demonstrate that it provides the best compromise in terms of circuit depth, optimization costs, and accuracy. We evaluate the requirements, number of qubits and circuit depth, for the calculation of vibrational energies on quantum hardware and compare them with state-of-the-art classical vibrational structure algorithms for molecules with up to seven atoms.

quant-ph↗

arXiv2020

Semiclassical Dispersion Corrections efficiently improve Multi-Configurational Theory with Short-Range Density-Functional Dynamic Correlation

Multi-configurational wave functions are known to describe electronic structure across a Born-Oppenheimer surface qualitatively correct. However, for quantitative reaction energies, dynamical correlation originating from the many configurations involving excitations out of the restricted orbital space, the active space, must be considered. Standard procedures involve approximations that eventually limit the ultimate accuracy achievable (most prominently, multi-reference perturbation theory). At the same time, the computational cost increase dramatically due to the necessity to obtain higher-order reduced density matrices. It is this disproportion that leads us here to propose a MC-srDFT-D hybrid approach of semiclassical dispersion (D) corrections to cover long-range dynamical correlation in a multi-configurational (MC) wave function theory which includes short-range (sr) dynamical correlation by density functional theory (DFT) without double counting. We demonstrate that the reliability of this approach is very good (at negligible cost), especially when considering that standard second-order multi-reference perturbation theory usually overestimates dispersion interactions.

physics.chem-ph↗

arXiv2020

Self-Parametrizing System-Focused Atomistic Models

Computational studies of chemical reactions in complex environments such as proteins, nanostructures, or on surfaces require accurate and efficient atomistic models applicable to the nanometer scale. In general, an accurate parametrization of the atomistic entities will not be available for arbitrary system classes, but demands a fast automated system-focused parametrization procedure to be quickly applicable, reliable, flexible, and reproducible. Here, we develop and combine an automatically parametrizable quantum chemically derived molecular mechanics model with machine-learned corrections under autonomous uncertainty quantification and refinement. Our approach first generates an accurate, physically motivated model from a minimum energy structure and its corresponding Hessian matrix by a partial Hessian fitting procedure of the force constants. This model is then the starting point to generate a large number of configurations for which additional off-minimum reference data can be evaluated on the fly. A $Δ$-machine learning model is trained on these data to provide a correction to energies and forces including uncertainty estimates. During the procedure, the flexibility of the machine learning model is tailored to the amount of available training data. The parametrization of large systems is enabled by a fragmentation approach. Due to their modular nature, all model construction steps allow for model improvement in a rolling fashion. Our approach may also be employed for the generation of system-focused electrostatic molecular mechanics embedding environments in a quantum-mechanical/molecular-mechanical hybrid model for arbitrary atomistic structures at the nanoscale.

physics.chem-ph↗

arXiv2020

Systematic Microsolvation Approach with a Cluster-Continuum Scheme and Conformational Sampling

Solvation is a notoriously difficult and nagging problem for the rigorous theoretical description of chemistry in the liquid phase. Successes and failures of various approaches ranging from implicit solvation modeling through dielectric continuum embedding and microsolvated quantum chemical modeling to explicit molecular dynamics highlight this situation. Here, we focus on quantum chemical microsolvation and discuss an explicit conformational sampling ansatz to make this approach systematic. For this purpose, we introduce an algorithm for the rolling and automated microsolvation of solutes. Our protocol takes conformational sampling and rearrangements in the solvent shell into account. Its reliability is assessed by monitoring the evolution of the spread and average of the observables of interest.

physics.chem-ph↗

arXiv2020

The Density Matrix Renormalization Group in Chemistry and Molecular Physics: Recent Developments and New Challenges

In the past two decades, the density matrix renormalization group (DMRG) has emerged as an innovative new method in quantum chemistry relying on a theoretical framework very different from that of traditional electronic structure approaches. The development of the quantum chemical DMRG has been remarkably fast: it has already become one of the reference approaches for large-scale multiconfigurational calculations. This perspective discusses the major features of DMRG, highlighting its strengths and weaknesses also in comparison to other novel approaches. The method is presented following its historical development, starting from its original formulation up to its most recent applications. Possible routes to recover dynamical correlation are discussed in detail. Emerging new fields of applications of DMRG are explored, in particular its time-dependent formulation and the application to vibrational spectroscopy.

physics.comp-ph↗

arXiv2019

Approximate analytical gradients and nonadiabatic couplings for the state-average density matrix renormalization group self-consistent field method

We present an approximate scheme for analytical gradients and nonadiabatic couplings for calculating state-average density matrix renormalization group self-consistent-field wavefunction. Our formalism follows closely the state-average complete active space self-consistent-field (SA-CASSCF) \emph{ansatz}, which employs a Lagrangian, and the corresponding Lagrange multipliers are obtained from a solution of the coupled-perturbed CASSCF (CP-CASSCF) equations. We introduce a definition of the matrix product state (MPS) Lagrange multipliers based on a single-site tensor in a mixed-canonical form of the MPS, such that a sweep procedure is avoided in the solution of the CP-CASSCF equations. We apply our implementation to the optimization of a conical intersection in 1,2-dioxetanone, where we are able to fully reproduce the SA-CASSCF result up to arbitrary accuracy.

physics.chem-ph↗

arXiv2019

H$_3^+$ as a five-body problem described with explicitly correlated Gaussian basis sets

Various explicitly correlated Gaussian (ECG) basis sets are considered for the solution of the molecular Schrödinger equation with particular attention to the simplest polyatomic system, H$_3^+$. Shortcomings and advantages are discussed for plain ECGs, ECGs with the global vector representation, floating ECGs and their numerical projection, and ECGs with complex parameters. The discussion is accompanied with particle density plots to visualize the observations. In order to be able to use large complex ECG basis sets in molecular calculations, a numerically stable algorithm is developed, the efficiency of which is demonstrated for the lowest rotationally and vibrationally excited states of H$_2$ and H$_3^+$.

physics.chem-ph↗

arXiv2019

The Exploration of Chemical Reaction Networks

Modern computational chemistry has reached a stage at which massive exploration into chemical reaction space with unprecedented resolution with respect to the number of potentially relevant molecular structures has become possible. Various algorithmic advances have shown that such structural screenings must and can be automated and routinely carried out. This will replace the standard approach of manually studying a selected and restricted number of molecular structures for a chemical mechanism. The complexity of the task has led to many different approaches. However, all of them address the same general target, namely to produce a complete atomistic picture of the kinetics of a chemical process. It is the purpose of this overview to categorize the problems that are to be targeted and to identify the principle components and challenges of automated exploration machines so that the various existing approaches and future developments can be compared based on well-defined conceptual principles.

physics.chem-ph↗

arXiv2019

Gaussian Process-Based Refinement of Dispersion Corrections

We employ Gaussian process (GP) regression to adjust for systematic errors in D3-type dispersion corrections introducing the associated, statistically improved model D3-GP. We generated a data set containing interaction energies for 1,248 molecular dimers, which resemble the dispersion-dominated systems contained in the S66 data set. Our systems do not only represent equilibrium structures, but also dimers with various relative orientations and conformations at both shorter and longer distances. To train our D3-GP model, we engineered two different vectorial representations of (supra-)molecular systems, both derived from the matrix of atom-pairwise D3(BJ) interaction terms: (a) a distance-resolved interaction energy histogram and (b) eigenvalues of the interaction matrix ordered according to their decreasing absolute value. We harness the prediction variance obtained from GP regression to select optimal training sets in an automated fashion. The larger the variance, the more information the corresponding data point may add to the training set. For a given set of molecular systems, variance-based sampling can approximately determine the smallest subset being subjected to reference calculations such that all dispersion corrections for the remaining systems fall below a predefined accuracy threshold. Our refined learning algorithm selects multiple (instead of single) systems which can be subjected to reference calculations simultaneously. We refer to the underlying selection strategy as batch-wise variance-based sampling (BVS). BVS-guided active learning is an essential component of our D3-GP workflow, which is implemented in a black-box fashion. This approach leads overall to a self-improving model (D3-GP) that predicts system-focused and GP-refined D3-type dispersion corrections for any given system of reference data.

physics.chem-ph↗

arXiv2019

autoCAS: a program for fully automated multi-configurational calculations

We present our implementation autoCAS for fully automated multi-configurational calculations, which we also make available free of charge on our webpages. The graphical user interface of autoCAS connects a general electronic structure program with a density matrix renormalization group program to carry out our recently introduced automated active space selection protocol for multi-configurational calculations [J. Chem. Theory Comput., 2016, 12, 1760]. Next to this active space selection, autoCAS carries out several steps of multi-configurational calculations so that only a minimal input is required to start them, comparable to that of a standard Kohn-Sham density functional theory calculation, so that black-box multi-configurational calculations become feasible. Furthermore, we introduce a new extension to the selection algorithm that facilitates automated selections for molecules with large valence orbital spaces consisting of several hundred orbitals.

physics.chem-ph↗

arXiv2019

Large-scale quantum-dynamics with matrix product states

Dynamical electronic- and vibrational-structure theories have received a growing interest in the last years due to their ability to simulate spectra recorded with ultrafast experimental techniques. The exact time evolution of a molecular system can, in principle, be obtained from the time-dependent version of full configuration interaction. Such an approach is, however, limited to few-atom systems due to the exponential increase of its cost with the system dimension. In the present work, we overcome this unfavorable scaling by employing the time-dependent density matrix renormalization group (TD-DMRG) which parametrizes the time-dependent wavefunction as a matrix product state. The time-dependent Schroedinger equation is then integrated with a sweep-based algorithm, as in standard time-independent DMRG. Unlike other TD-DMRG approaches, the one presented here leads to a set of coupled equations that can be integrated exactly. The resulting theory enables us to study real- and imaginary-time evolutions of Hamiltonians comprising more than 20 degrees of freedom that are challenging for current state-of-the-art quantum dynamics algorithms. We apply our algorithm to the simulation of quantum dynamics of models of increasing complexity, ranging from simple excitonic Hamiltonians to more complex ab-initio vibronic ones.

physics.comp-ph↗

arXiv2019

Training neural nets to learn reactive potential energy surfaces using interactive quantum chemistry in virtual reality

Whilst the primary bottleneck to a number of computational workflows was not so long ago limited by processing power, the rise of machine learning technologies has resulted in a paradigm shift which places increasing value on issues related to data curation - i.e., data size, quality, bias, format, and coverage. Increasingly, data-related issues are equally as important as the algorithmic methods used to process and learn from the data. Here we introduce an open source GPU-accelerated neural network (NN) framework for learning reactive potential energy surfaces (PESs), and investigate the use of real-time interactive ab initio molecular dynamics in virtual reality (iMD-VR) as a new strategy for rapidly sampling geometries along reaction pathways which can be used to train NNs to learn reactive PESs. Focussing on hydrogen abstraction reactions of CN radical with isopentane, we compare the performance of NNs trained using iMD-VR data versus NNs trained using a more traditional method, namely molecular dynamics (MD) constrained to sample a predefined grid of points along hydrogen abstraction reaction coordinates. Both the NN trained using iMD-VR data and the NN trained using the constrained MD data reproduce important qualitative features of the reactive PESs, such as a low and early barrier to abstraction. Quantitatively, learning is sensitive to the training dataset. Our results show that user-sampled structures obtained with the quantum chemical iMD-VR machinery enable better sampling in the vicinity of the minimum energy path (MEP). As a result, the NN trained on the iMD-VR data does very well predicting energies in the vicinity of the MEP, but less well predicting energies for 'off-path' structures. The NN trained on the constrained MD data does better in predicting energies for 'off-path' structures, given that it included a number of such structures in its training set.

physics.chem-ph↗

arXiv2019

Optimization of highly excited matrix product states with an application to vibrational spectroscopy

Configuration-interaction-type calculations on electronic and vibrational structure are often the method of choice for the reliable approximation of many-particle wave functions and energies. The exponential scaling, however, limits their application range. An efficient approximation to the full configuration interaction solution can be obtained with the density matrix renormalization group (DMRG) algorithm without a restriction to a predefined excitation level. In a standard DMRG implementation, however, excited states are calculated with a ground-state optimization in the space orthogonal to all lower lying wave function solutions. A trivial parallelization is therefore not possible and the calculation of highly excited states becomes prohibitively expensive, especially in regions with a high density of states. Here, we introduce two variants of the density matrix renormalization group algorithm that allow us to target directly specific energy regions and therefore highly excited states. The first one, based on shift-and-invert techniques, is particularly efficient for low-lying states, but is not stable in regions with a high density of states. The second one, based on the folded auxiliary operator, is less efficient, but more accurate in targeting high-energy states. We apply the algorithm to the solution of the nuclear Schroedinger equation, but emphasize that it can be applied to the diagonalization of general Hamiltonians as well, such as the electronic Coulomb Hamiltonian to address X-ray spectra. In combination with several root-homing algorithms and a stochastic sampling of the determinant space, excited states of interest can be adequately tracked and analyzed during the optimization. We demonstrate that we can accurately calculate prominent spectral features of large molecules such as the sarcosyn-glycine dipeptide.

physics.comp-ph↗

arXiv2018

Mechanism Deduction from Noisy Chemical Reaction Networks

We introduce KiNetX, a fully automated meta-algorithm for the kinetic analysis of complex chemical reaction networks derived from semi-accurate but efficient electronic structure calculations. It is designed to (i) accelerate the automated exploration of such networks, and (ii) cope with model-inherent errors in electronic structure calculations on elementary reaction steps. We developed and implemented KiNetX to possess three features. First, KiNetX evaluates the kinetic relevance of every species in a (yet incomplete) reaction network to confine the search for new elementary reaction steps only to those species that are considered possibly relevant. Second, KiNetX identifies and eliminates all kinetically irrelevant species and elementary reactions to reduce a complex network graph to a comprehensible mechanism. Third, KiNetX estimates the sensitivity of species concentrations toward changes in individual rate constants (derived from relative free energies), which allows us to systematically select the most efficient electronic structure model for each elementary reaction given a predefined accuracy. The novelty of KiNetX consists in the rigorous propagation of correlated free-energy uncertainty through all steps of our kinetic analyis. To examine the performance of KiNetX, we developed AutoNetGen. It semirandomly generates chemistry-mimicking reaction networks by encoding chemical logic into their underlying graph structure. AutoNetGen allows us to consider a vast number of distinct chemistry-like scenarios and, hence, to discuss assess the importance of rigorous uncertainty propagation in a statistical context. Our results reveal that KiNetX reliably supports the deduction of product ratios, dominant reaction pathways, and possibly other network properties from semi-accurate electronic structure data.

physics.chem-ph↗

arXiv2018

Exploration of Reaction Pathways and Chemical Transformation Networks

For the investigation of chemical reaction networks, the identification of all relevant intermediates and elementary reactions is mandatory. Many algorithmic approaches exist that perform explorations efficiently and automatedly. These approaches differ in their application range, the level of completeness of the exploration, as well as the amount of heuristics and human intervention required. Here, we describe and compare the different approaches based on these criteria. Future directions leveraging the strengths of chemical heuristics, human interaction, and physical rigor are discussed.

physics.chem-ph↗

arXiv2018

Semiempirical Molecular Orbital Models based on the Neglect of Diatomic Differential Overlap Approximation

Semiempirical molecular orbital (SEMO) models based on the neglect of diatomic differential overlap (NDDO) approximation efficiently solve the self-consistent field equations by rather drastic approximations. The computational efficiency comes at the cost of an error in the electron-electron repulsion integrals. The error may be compensated by the introduction of parametric expressions to evaluate the electron-electron repulsion integrals, the one-electron integrals, and the core-core repulsion. We review the resulting formalisms of popular NDDO-SEMO models (such as the MNDO(/d), AM1, PMx, and OMx models) in a concise and self-contained manner. We discuss the approaches to implicitly and explicitly describe electron correlation effects within NDDO-SEMO models and we dissect strengths and weaknesses of the different approaches in a detailed analysis. For this purpose, we consider the results of recent benchmark studies. Furthermore, we apply bootstrapping to perform a sensitivity analysis for a selection of parameters in the MNDO model. We also identify systematic limitations of NDDO-SEMO models by drawing on an analogy to Kohn--Sham density functional theory.

physics.chem-ph↗

arXiv2018

Error-Controlled Exploration of Chemical Reaction Networks with Gaussian Processes

For a theoretical understanding of the reactivity of complex chemical systems, relative energies of stationary points on potential energy hypersurfaces need to be calculated to high accuracy. Due to the large number of intermediates present in all but the simplest chemical processes, approximate quantum chemical methods are required that allow for fast evaluations of the relative energies, but at the expense of accuracy. Despite the plethora of benchmark studies, the accuracy of a quantum chemical method is often difficult to assess. Moreover, a significant improvement of a method's accuracy (e.g., through reparameterization or systematic model extension) is rarely possible. Here, we present a new approach that allows for the systematic, problem-oriented, and rolling improvement of quantum chemical results through the application of Gaussian processes. Due to its Bayesian nature, reliable error estimates are provided for each prediction. A reference method of high accuracy can be employed, if the uncertainty associated with a particular calculation is above a given threshold. The new data point is then added to a growing data set in order to continuously improve the model, and as a result, all subsequent predictions. Previous predictions are validated by the updated model to ensure that uncertainties remain within the given confidence bound, which we call backtracking. We demonstrate our approach at the example of a complex chemical reaction network.

physics.chem-ph↗