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Marta Cipriani

Publications and source records attributed to Marta Cipriani.

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Dynamic Prediction in Mixture Cure Models: A Model-Based Landmarking Approach

Mixture cure models are widely used in survival analysis when a portion of patients is considered cured and is no longer at risk for the event of interest. In clinical settings, dynamic survival prediction is particularly important to refine prognosis by incorporating updated patient information over time. Landmarking methods have emerged as a flexible approach for this purpose, as they allow to summarize longitudinal covariates up to a given landmark time and to use these summaries in subsequent prediction. For mixture cure models, the only landmarking strategy available in the literature relies on the last observation carried forward (LOCF) method to summarize longitudinal dynamics up to the landmark time. However, LOCF discards most of the longitudinal information, does not correct for measurement error, and may rely on outdated values if observation times are far apart. To overcome these limitations, we propose a sequential approach that integrates model-based landmarking within a mixture cure model. Initially, longitudinal covariates are modeled using (generalized) linear mixed models, from which individual-specific random effects are predicted. The predicted random effects are then incorporated as covariates into a Cox proportional hazards cure model. We investigated the performance of the proposed approach under different cure fractions, sample sizes, and longitudinal data structures through an extensive simulation study. The results show that the model-based strategy provides more refined predictions compared to LOCF, even when the model is misspecified in favour of the LOCF approach. Finally, we illustrate our method using a real-world dataset on renal transplant patients.

stat.ME

A multiple imputation approach to distinguish curative from life-prolonging effects in the presence of missing covariates

Medical advances have increased cancer survival rates and the possibility of finding a cure. Hence, it is crucial to evaluate the impact of treatments both in terms of cure and prolongation of survival. To achieve this, we may use a Cox proportional hazards (PH) cure model. However, a significant challenge in applying such a model is the potential presence of partially observed covariates. We aim to refine the methods for imputing partially observed covariates based on multiple imputation and fully conditional specification (FCS) approaches. To be more specific, we consider a general case in which different covariate vectors are used to model the probability of cure and the survival of patients who are not cured. We investigated the performance of the multiple imputation procedure based on the exact conditional distribution and an approximate imputation model, which helps to draw imputed values at a lower computational cost. To assess the effectiveness of these approaches, we compare them with a complete case analysis and an analysis that includes all available covariates in modelling both cure probabilities and the survival of the uncured. We discuss the application of these techniques to a real-world dataset from the BO06 clinical trial on osteosarcoma.

stat.ME

A flexible parametric approach to synthetic patients generation using health data

Enhancing reproducibility and data accessibility is essential to scientific research. However, ensuring data privacy while achieving these goals is challenging, especially in the medical field, where sensitive data are often commonplace. One possible solution is to use synthetic data that mimic real-world datasets. This approach may help to streamline therapy evaluation and enable quicker access to innovative treatments. We propose using a method based on sequential conditional regressions, such as in a fully conditional specification (FCS) approach, along with flexible parametric survival models to accurately replicate covariate patterns and survival times. To make our approach available to a wide audience of users, we have developed user-friendly functions in R and Python to implement it. We also provide an example application to registry data on patients affected by Creutzfeld-Jacob disease. The results show the potentialities of the proposed method in mirroring observed multivariate distributions and survival outcomes.

stat.ME