arXiv subjects

Marta M. Jankowska

Publications and source records attributed to Marta M. Jankowska.

3 recordsLinked to original sources

arXiv2022

A Riemann Manifold Model Framework for Longitudinal Changes in Physical Activity Patterns

Physical activity (PA) is significantly associated with many health outcomes. The wide usage of wearable accelerometer-based activity trackers in recent years has provided a unique opportunity for in-depth research on PA and its relations with health outcomes and interventions. Past analysis of activity tracker data relies heavily on aggregating minute-level PA records into day-level summary statistics, in which important information of PA temporal/diurnal patterns is lost. In this paper we propose a novel functional data analysis approach based on Riemann manifolds for modeling PA and its longitudinal changes. We model smoothed minute-level PA of a day as one-dimensional Riemann manifolds and longitudinal changes in PA in different visits as deformations between manifolds. The variability in changes of PA among a cohort of subjects is characterized via variability in the deformation. Functional principal component analysis is further adopted to model the deformations and PC scores are used as a proxy in modeling the relation between changes in PA and health outcomes and/or interventions. We conduct comprehensive analyses on data from two clinical trials: Reach for Health (RfH) and Metabolism, Exercise and Nutrition at UCSD (MENU), focusing on the effect of interventions on longitudinal changes in PA patterns and how different modes of changes in PA influence weight loss, respectively. The proposed approach reveals unique modes of changes including overall enhanced PA, boosted morning PA, and shifts of active hours specific to each study cohort. The results bring new insights into the study of longitudinal changes in PA and health and have the potential to facilitate designing of effective health interventions and guidelines.

stat.AP↗

arXiv2022

Sedentary Behavior Estimation with Hip-worn Accelerometer Data: Segmentation, Classification and Thresholding

Cohort studies are increasingly using accelerometers for physical activity and sedentary behavior estimation. These devices tend to be less error-prone than self-report, can capture activity throughout the day, and are economical. However, previous methods for estimating sedentary behavior based on hip-worn data are often invalid or suboptimal under free-living situations and subject-to-subject variation. In this paper, we propose a local Markov switching model that takes this situation into account, and introduce a general procedure for posture classification and sedentary behavior analysis that fits the model naturally. Our method features changepoint detection methods in time series and also a two stage classification step that labels data into 3 classes(sitting, standing, stepping). Through a rigorous training-testing paradigm, we showed that our approach achieves > 80% accuracy. In addition, our method is robust and easy to interpret.

cs.LG↗

arXiv2019

Predicting Eating Events in Free Living Individuals -- A Technical Report

This technical report records the experiments of applying multiple machine learning algorithms for predicting eating and food purchasing behaviors of free-living individuals. Data was collected with accelerometer, global positioning system (GPS), and body-worn cameras called SenseCam over a one week period in 81 individuals from a variety of ages and demographic backgrounds. These data were turned into minute-level features from sensors as well as engineered features that included time (e.g., time since last eating) and environmental context (e.g., distance to nearest grocery store). Algorithms include Logistic Regression, RBF-SVM, Random Forest, and Gradient Boosting. Our results show that the Gradient Boosting model has the highest mean accuracy score (0.7289) for predicting eating events before 0 to 4 minutes. For predicting food purchasing events, the RBF-SVM model (0.7395) outperforms others. For both prediction models, temporal and spatial features were important contributors to predicting eating and food purchasing events.

cs.LG↗