arXiv subjects

Martin Carrasco

Publications and source records attributed to Martin Carrasco.

7 recordsLinked to original sources

arXiv2026

Diversity Curves for Graph Representation Learning

Graph-level representations are crucial tools for characterising structural differences between graphs. However, comparing graphs with different cardinalities, even when sampled from the same underlying distribution, remains challenging. Unsupervised tasks in particular require interpretable, scalable, and reliable size-aware graph representations. Our work addresses these issues by tracking the structural diversity of a graph across coarsening levels. The resulting graph embeddings, which we denote diversity curves, are interpretable by construction, efficient, and directly comparable across coarsening hierarchies. Specifically, we track the spread of graphs, a novel isometry invariant that is inherently well-suited for encoding the metric diversity and geometry of graphs. We utilise edge contraction coarsening and prove that this improves expressivity, thus leading to more powerful graph-level representations than structural descriptors alone. Demonstrating their utility over a range of baseline methods in practice, we use diversity curves to (i) cluster and visualise simulated graphs across varying sizes, (ii) distinguish the geometry of single-cell graphs, (iii) compare the structure of molecular graph datasets, and (iv) characterise geometric shapes.

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arXiv2026

No Triangulation Without Representation: Generalization in Topological Deep Learning

Despite an ever-increasing interest in topological deep learning models that target higher-order datasets, there is no consensus on how to evaluate such models. This is exacerbated by the fact that topological objects permit operations, such as structural refinements, that are not appropriate for graph data. In this work, we extend MANTRA, a benchmark dataset containing manifold triangulations, to a larger class of manifolds with more diverse homeomorphism types. We show that, unlike prior claims, both graph neural networks (GNNs) and higher-order message passing (HOMP) methods can saturate the benchmark. However, we find that this is contingent on the right representation and feature assignment, emphasizing their importance in baseline models. We thus provide a novel evaluation protocol based on representational diversity and triangulation refinement. Surprisingly, we find no indication that existing models are capable of generalizing beyond the combinatorial structure of the data. This points towards a research gap in developing models that understand topological structure independent of scale. Our work thus provides the necessary scaffolding to evaluate future models and enable the development of topology-aware inductive biases.

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arXiv2025

Graph Homomorphism Distortion: A Metric to Distinguish Them All and in the Latent Space Bind Them

A large driver of the complexity of graph learning is the interplay between structure and features. When analyzing the expressivity of graph neural networks, however, existing approaches ignore features in favor of structure, making it nigh-impossible to assess to what extent two graphs with close features should be considered similar. We address this by developing a new (pseudo-)metric based on graph homomorphisms. Inspired by concepts from metric geometry, our graph homomorphism distortion measures the minimal worst-case distortion that node features of one graph are subjected to when mapping one graph to another. We demonstrate the utility of our novel measure by showing that (i.) it can be efficiently calculated under some additional assumptions, (ii.) it complements existing expressivity measures like $1$-WL, and (iii.) it permits defining structural encodings, which improve the predictive capabilities of graph neural networks.

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arXiv2025

On the Rademacher Complexity of Graph Neural Networks: Unifying Expressivity and Geometry

Understanding the interplay between generalization, expressivity, and the geometry of the input space is a central challenge in graph learning. The expressivity of Graph Neural Networks (GNNs) is typically characterized through their correspondence with graph invariants, such as those from the Weisfeiler-Leman (WL) hierarchy. While more expressive GNNs can distinguish a richer set of graphs, they are also associated with weaker generalization guarantees. Previous works have addressed this trade-off using the VC dimension, a purely combinatorial measure, independent of the training data. In this work, we adopt a data-dependent measure of generalization, the empirical Rademacher complexity, and derive tight generalization bounds that jointly consider the expressive power of GNNs and the geometry of the underlying input space. Specifically, any graph invariant that upper-bounds a GNN's expressive power partitions the input space into equivalence classes, and we show that the empirical Rademacher complexity is controlled by the distribution of training samples across these classes. Moving beyond discrete partitions, we incorporate the geometry of the input space and derive covering-number bounds under Lipschitz continuity, showing that the complexity cost can be mitigated when the hypothesis class remains smooth over the data geometry. In addition, we prove that the empirical Rademacher complexity is Lipschitz continuous with respect to the Wasserstein distance between empirical measures supported on different datasets. This yields robustness and generalization guarantees under sampling variability. Importantly, our framework is not restricted to message-passing GNNs or WL, but extends to arbitrary GNN architectures and their associated invariants, providing a step toward a unified theory of GNN generalization.

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arXiv2025

HOPSE: Scalable Higher-Order Positional and Structural Encoder for Combinatorial Representations

While Graph Neural Networks (GNNs) have proven highly effective at modeling relational data, pairwise connections cannot fully capture multi-way relationships naturally present in complex real-world systems. In response to this, Topological Deep Learning (TDL) leverages more general combinatorial representations--such as simplicial or cellular complexes--to accommodate higher-order interactions. Existing TDL methods often extend GNNs through Higher-Order Message Passing (HOMP), but face critical scalability challenges due to the steep complexity overhead of propagating messages through combinatorial structures. To overcome this limitation, we propose HOPSE (Higher-Order Positional and Structural Encoder), a framework free of message passing layers that uses Hasse graph decompositions to derive efficient and expressive encodings over arbitrary higher-order domains. Notably, HOPSE scales linearly with the size of combinatorial representations while preserving the expressive power and permutation equivariance of the HOMP approaches. Experiments on molecular and topological benchmarks show that it matches or surpasses state-of-the-art performance while consistently achieving speedups over HOMP-based models, opening a new path for scalable TDL. The code is available at https://github.com/geometric-intelligence/topobench.git.

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arXiv2024

ICML Topological Deep Learning Challenge 2024: Beyond the Graph Domain

This paper describes the 2nd edition of the ICML Topological Deep Learning Challenge that was hosted within the ICML 2024 ELLIS Workshop on Geometry-grounded Representation Learning and Generative Modeling (GRaM). The challenge focused on the problem of representing data in different discrete topological domains in order to bridge the gap between Topological Deep Learning (TDL) and other types of structured datasets (e.g. point clouds, graphs). Specifically, participants were asked to design and implement topological liftings, i.e. mappings between different data structures and topological domains --like hypergraphs, or simplicial/cell/combinatorial complexes. The challenge received 52 submissions satisfying all the requirements. This paper introduces the main scope of the challenge, and summarizes the main results and findings.

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arXiv2024

TopoBench: A Framework for Benchmarking Topological Deep Learning

This work introduces TopoBench, an open-source library designed to standardize benchmarking and accelerate research in topological deep learning (TDL). TopoBench decomposes TDL into a sequence of independent modules for data generation, loading, transforming and processing, as well as model training, optimization and evaluation. This modular organization provides flexibility for modifications and facilitates the adaptation and optimization of various TDL pipelines. A key feature of TopoBench is its support for transformations and lifting across topological domains. Mapping the topology and features of a graph to higher-order topological domains, such as simplicial and cell complexes, enables richer data representations and more fine-grained analyses. The applicability of TopoBench is demonstrated by benchmarking several TDL architectures across diverse tasks and datasets.

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