arXiv subjects

Martin Milanič

Publications and source records attributed to Martin Milanič.

88 records · Page 5Linked to original sources

arXiv2016

On two extensions of equimatchable graphs

A graph is said to be equimatchable if all its maximal matchings are of the same size. In this work we introduce two extensions of the property of equimatchability by defining two new graph parameters that measure how far a graph is from being equimatchable. The first one, called the matching gap, measures the difference between the sizes of a maximum matching and a minimum maximal matching. The second extension is obtained by introducing the concept of equimatchable sets; a set of vertices in a graph $G$ is said to be equimatchable if all maximal matchings of $G$ saturating the set are of the same size. Noting that $G$ is equimatchable if and only if the empty set is equimatchable, we study the equimatchability defect of the graph, defined as the minimum size of an equimatchable set in it. We develop several inapproximability and parameterized complexity results and algorithms regarding the computation of these two parameters, a characterization of graphs of unit matching gap, exact values of the equimatchability defect of cycles, and sharp bounds for both parameters.

math.CO↗

arXiv2016

1-perfectly orientable graphs and graph products

A graph G is said to be 1-perfectly orientable (1-p.o. for short) if it admits an orientation such that the out-neighborhood of every vertex is a clique in G. The class of 1-p.o. graphs forms a common generalization of the classes of chordal and circular arc graphs. Even though 1-p.o. graphs can be recognized in polynomial time, no structural characterization of 1-p.o. graphs is known. In this paper we consider the four standard graph products: the Cartesian product, the strong product, the direct product, and the lexicographic product. For each of them, we characterize when a nontrivial product of two graphs is 1-p.o.

math.CO↗

arXiv2016

Complexity and algorithms for finding a perfect phylogeny from mixed tumor samples

Recently, Hajirasouliha and Raphael (WABI 2014) proposed a model for deconvoluting mixed tumor samples measured from a collection of high-throughput sequencing reads. This is related to understanding tumor evolution and critical cancer mutations. In short, their formulation asks to split each row of a binary matrix so that the resulting matrix corresponds to a perfect phylogeny and has the minimum number of rows among all matrices with this property. In this paper we disprove several claims about this problem, including an NP-hardness proof of it. However, we show that the problem is indeed NP-hard, by providing a different proof. We also prove NP-completeness of a variant of this problem proposed in the same paper. On the positive side, we propose an efficient (though not necessarily optimal) heuristic algorithm based on coloring co-comparability graphs, and a polynomial time algorithm for solving the problem optimally on matrix instances in which no column is contained in both columns of a pair of conflicting columns. Implementations of these algorithms are freely available at https://github.com/alexandrutomescu/MixedPerfectPhylogeny

q-bio.PE↗

arXiv2016

$1$-perfectly orientable $K_4$-minor-free and outerplanar graphs

A graph $G$ is said to be $1$-perfectly orientable if it has an orientation such that for every vertex $v\in V(G)$, the out-neighborhood of $v$ in $D$ is a clique in $G$. In $1982$, Skrien posed the problem of characterizing the class of $1$-perfectly orientable graphs. This graph class forms a common generalization of the classes of chordal and circular arc graphs; however, while polynomially recognizable via a reduction to $2$-SAT, no structural characterization of this intriguing class of graphs is known. Based on a reduction of the study of $1$-perfectly orientable graphs to the biconnected case, we characterize, both in terms of forbidden induced minors and in terms of composition theorems, the classes of $1$-perfectly orientable $K_4$-minor-free graphs and of $1$-perfectly orientable outerplanar graphs. As part of our approach, we introduce a class of graphs defined similarly as the class of $2$-trees and relate the classes of graphs under consideration to two other graph classes closed under induced minors studied in the literature: cyclically orientable graphs and graphs of separability at most~$2$.

math.CO↗

arXiv2016

On the complexity of the identifiable subgraph problem, revisited

A bipartite graph $G=(L,R;E)$ with at least one edge is said to be identifiable if for every vertex $v\in L$, the subgraph induced by its non-neighbors has a matching of cardinality $|L|-1$. An $\ell$-subgraph of $G$ is an induced subgraph of $G$ obtained by deleting from it some vertices in $L$ together with all their neighbors. The Identifiable Subgraph problem is the problem of determining whether a given bipartite graph contains an identifiable $\ell$-subgraph. We show that the Identifiable Subgraph problem is polynomially solvable, along with the version of the problem in which the task is to delete as few vertices from $L$ as possible together with all their neighbors so that the resulting $\ell$-subgraph is identifiable. We also complement a known APX-hardness result for the complementary problem in which the task is to minimize the number of remaining vertices in $L$, by showing that two parameterized variants of the problem are W[1]-hard.

cs.DM↗

arXiv2016

Partial characterizations of 1-perfectly orientable graphs

We study the class of 1-perfectly orientable graphs, that is, graphs having an orientation in which every out-neighborhood induces a tournament. 1-perfectly orientable graphs form a common generalization of chordal graphs and circular arc graphs. Even though they can be recognized in polynomial time, little is known about their structure. In this paper, we develop several results on 1-perfectly orientable graphs. In particular, we: (i) give a characterization of 1-perfectly orientable graphs in terms of edge clique covers, (ii) identify several graph transformations preserving the class of 1-perfectly orientable graphs, (iii) exhibit an infinite family of minimal forbidden induced minors for the class of 1-perfectly orientable graphs, and (iv) characterize the class of 1-perfectly orientable graphs within the classes of cographs and of cobipartite graphs. The class of 1-perfectly orientable co-bipartite graphs coincides with the class of co-bipartite circular arc graphs.

math.CO↗

arXiv2016

Stable sets in {ISK4,wheel}-free graphs

math.CO↗

arXiv2016

A decomposition theorem for {ISK4,wheel}-free trigraphs

An ISK4 in a graph G is an induced subgraph of G that is isomorphic to a subdivision of K4 (the complete graph on four vertices). A wheel is a graph that consists of a chordless cycle, together with a vertex that has at least three neighbors in the cycle. A graph is {ISK4,wheel}-free if it has no ISK4 and does not contain a wheel as an induced subgraph. A "trigraph" is a generalization of a graph in which some pairs of vertices have "undetermined" adjacency. We prove a decomposition theorem for {ISK4,wheel}-free trigraphs. Our proof closely follows the proof of a decomposition theorem for ISK4-free graphs due to Lévêque, Maffray, and Trotignon (On graphs with no induced subdivision of K4. J. Combin. Theory Ser. B, 102(4):924-947, 2012).

math.CO↗

arXiv2015

On Equistable, Split, CIS, and Related Classes of Graphs

We consider several graphs classes defined in terms of conditions on cliques and stable sets, including CIS, split, equistable, and other related classes. We pursue a systematic study of the relations between them. As part of this study, we introduce two generalizations of CIS graphs, obtain a new characterization of split graphs, and a characterization of CIS line graphs.

math.CO↗

arXiv2015

Graph classes with and without powers of bounded clique-width

We initiate the study of graph classes of power-bounded clique-width, that is, graph classes for which there exist integers $k$ and $\ell$ such that the $k$-th powers of the graphs are of clique-width at most $\ell$. We give sufficient and necessary conditions for this property. As our main results, we characterize graph classes of power-bounded clique-width within classes defined by either one forbidden induced subgraph, or by two connected forbidden induced subgraphs. We also show that for every positive integer $k$, there exists a graph class such that the $k$-th powers of graphs in the class form a class of bounded clique-width, while this is not the case for any smaller power.

math.CO↗

arXiv2015

Equistarable bipartite graphs

Recently, Milanič and Trotignon introduced the class of equistarable graphs as graphs without isolated vertices admitting positive weights on the edges such that a subset of edges is of total weight $1$ if and only if it forms a maximal star. Based on equistarable graphs, counterexamples to three conjectures on equistable graphs were constructed, in particular to Orlin's conjecture, which states that every equistable graph is a general partition graph. In this paper we characterize equistarable bipartite graphs. We show that a bipartite graph is equistarable if and only if every $2$-matching of the graph extends to a matching covering all vertices of degree at least $2$. As a consequence of this result, we obtain that Orlin's conjecture holds within the class of complements of line graphs of bipartite graphs. We also connect equistarable graphs to the triangle condition, a combinatorial condition known to be necessary (but in general not sufficient) for equistability. We show that the triangle condition implies general partitionability for complements of line graphs of forests, and construct an infinite family of triangle non-equistable graphs within the class of complements of line graphs of bipartite graphs.

math.CO↗

arXiv2014

On the complexity of the vector connectivity problem

We study a relaxation of the Vector Domination problem called Vector Connectivity (VecCon). Given a graph $G$ with a requirement $r(v)$ for each vertex $v$, VecCon asks for a minimum cardinality set $S$ of vertices such that every vertex $v\in V\setminus S$ is connected to $S$ via $r(v)$ disjoint paths. In the paper introducing the problem, Boros et al. [Networks, 2014] gave polynomial-time solutions for VecCon in trees, cographs, and split graphs, and showed that the problem can be approximated in polynomial time on $n$-vertex graphs to within a factor of $\log n+2$, leaving open the question of whether the problem is NP-hard on general graphs. We show that VecCon is APX-hard in general graphs, and NP-hard in planar bipartite graphs and in planar line graphs. We also generalize the polynomial result for trees by solving the problem for block graphs.

cs.DM↗

arXiv2014

Polynomial-time Algorithms for Weighted Efficient Domination Problems in AT-free Graphs and Dually Chordal Graphs

An efficient dominating set (or perfect code) in a graph is a set of vertices the closed neighborhoods of which partition the vertex set of the graph. The minimum weight efficient domination problem is the problem of finding an efficient dominating set of minimum weight in a given vertex-weighted graph; the maximum weight efficient domination problem is defined similarly. We develop a framework for solving the weighted efficient domination problems based on a reduction to the maximum weight independent set problem in the square of the input graph. Using this approach, we improve on several previous results from the literature by deriving polynomial-time algorithms for the weighted efficient domination problems in the classes of dually chordal and AT-free graphs. In particular, this answers a question by Lu and Tang regarding the complexity of the minimum weight efficient domination problem in strongly chordal graphs.

cs.DM↗

arXiv2014

Vertex-transitive CIS graphs

A CIS graph is a graph in which every maximal stable set and every maximal clique intersect. A graph is well-covered if all its maximal stable sets are of the same size, co-well-covered if its complement is well-covered, and vertex-transitive if, for every pair of vertices, there exists an automorphism of the graph mapping one to the other. We show that a vertex-transitive graph is CIS if and only if it is well-covered, co-well-covered, and the product of its clique and stability numbers equals its order. A graph is irreducible if no two distinct vertices have the same neighborhood. We classify irreducible well-covered CIS graphs with clique number at most 3 and vertex-transitive CIS graphs of valency at most 7, which include an infinite family. We also exhibit an infinite family of vertex-transitive CIS graphs which are not Cayley.

math.CO↗

arXiv2014

Equistarable graphs and counterexamples to three conjectures on equistable graphs

Equistable graphs are graphs admitting positive weights on vertices such that a subset of vertices is a maximal stable set if and only if it is of total weight $1$. In $1994$, Mahadev et al.~introduced a subclass of equistable graphs, called strongly equistable graphs, as graphs such that for every $c \le 1$ and every non-empty subset $T$ of vertices that is not a maximal stable set, there exist positive vertex weights such that every maximal stable set is of total weight $1$ and the total weight of $T$ does not equal $c$. Mahadev et al. conjectured that every equistable graph is strongly equistable. General partition graphs are the intersection graphs of set systems over a finite ground set $U$ such that every maximal stable set of the graph corresponds to a partition of $U$. In $2009$, Orlin proved that every general partition graph is equistable, and conjectured that the converse holds as well. Orlin's conjecture, if true, would imply the conjecture due to Mahadev, Peled, and Sun. An intermediate conjecture, one that would follow from Orlin's conjecture and would imply the conjecture by Mahadev, Peled, and Sun, was posed by Miklavič and Milanič in $2011$, and states that every equistable graph has a clique intersecting all maximal stable sets. The above conjectures have been verified for several graph classes. We introduce the notion of equistarable graphs and based on it construct counterexamples to all three conjectures within the class of complements of line graphs of triangle-free graphs.

math.CO↗

arXiv2012

Set graphs. II. Complexity of set graph recognition and similar problems

A graph $G$ is said to be a `set graph' if it admits an acyclic orientation that is also `extensional', in the sense that the out-neighborhoods of its vertices are pairwise distinct. Equivalently, a set graph is the underlying graph of the digraph representation of a hereditarily finite set. In this paper, we continue the study of set graphs and related topics, focusing on computational complexity aspects. We prove that set graph recognition is NP-complete, even when the input is restricted to bipartite graphs with exactly two leaves. The problem remains NP-complete if, in addition, we require that the extensional acyclic orientation be also `slim', that is, that the digraph obtained by removing any arc from it is not extensional. We also show that the counting variants of the above problems are #P-complete, and prove similar complexity results for problems related to a generalization of extensional acyclic digraphs, the so-called `hyper-extensional digraphs', which were proposed by Aczel to describe hypersets. Our proofs are based on reductions from variants of the Hamiltonian Path problem. We also consider a variant of the well-known notion of a separating code in a digraph, the so-called `open-out-separating code', and show that it is NP-complete to determine whether an input extensional acyclic digraph contains an open-out-separating code of given size.

cs.DM↗