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Martine Ben Amar

Publications and source records attributed to Martine Ben Amar.

14 recordsLinked to original sources

A two-dimensional vertex model for curvy cell-cell interfaces at the subcellular scale

Cross-sections of cell shapes in a tissue monolayer typically resemble a tiling of convex polygons. Yet, examples exist where the polygons are not convex with curved cell-cell interfaces, as seen in the adaxial epidermis. To date, two-dimensional vertex models predicting the structure and mechanics of cell monolayers have been mostly limited to convex polygons. To overcome this limitation, we introduce a framework to study curvy cell-cell interfaces at the subcellular scale within vertex models by using a parameterized curve between vertices that is expanded in a Fourier series and whose coefficients represent additional degrees of freedom. This extension to non-convex polygons allows for cells with same shape index, or dimensionless perimeter, to be, for example, either elongated or globular with lobes. In the presence of applied, anisotropic stresses, we find that local, subcellular curvature, or buckling, can be energetically more favorable than larger scale deformations involving groups of cells. Inspired by recent experiments, we also find that local, subcellular curvature at cell-cell interfaces emerges in a group of cells in response to the swelling of additional cells surrounding the group. Our framework, therefore, can account for a wider array of multi-cellular responses to constraints in the tissue environment.

physics.bio-ph↗

Creases and cusps in growing soft matter

The buckling of a soft elastic sample under growth or swelling has highlighted a new interest in materials science, morphogenesis, and biology or physiology. Indeed, the change of mass or volume is a common fact of any living species, and on a scale larger than the cell size, a macroscopic view can help to explain many features of common observation. Many morphologies of soft materials result from the accumulation of elastic compressive stress due to growth, and thus from the minimization of a nonlinear elastic energy. The similarity between growth and compression of a piece of rubber has revived the instability formalism of nonlinear elastic samples under compression, and in particular Biot's instability. Here we present a modern treatment of this instability in the light of complex analysis and demonstrate the richness of possible profiles that an interface can present under buckling, even if one restricts oneself to the two spatial dimensions. Special attention is given to wrinkles, folds and cusps, a surprising observation in swelling gels or clays. The standard techniques of complex analysis, nonlinear bifurcation theory and path-independent integrals are revisited to highlight the role of physical parameters at the origin of the observed patterns below and above the Biot threshold.

cond-mat.soft↗

Osmotic stress affects functional properties of human melanoma cell lines

Understanding the role of microenvironment in cancer growth and metastasis is a key issue for cancer research. Here, we study the effect of osmotic pressure on the functional properties of primary and metastatic melanoma cell lines. In particular, we experimentally quantify individual cell motility and transmigration capability. We then perform a circular scratch assay to study how a cancer cell front invades an empty space. Our results show that primary melanoma cells are sensitive to a low osmotic pressure, while metastatic cells are less. To better understand the experimental results, we introduce and study a continuous model for the dynamics of a cell layer and a stochastic discrete model for cell proliferation and diffusion. The two models capture essential features of the experimental results and allow to make predictions for a wide range of experimentally measurable parameters.

physics.bio-ph↗

Mutual adaptation of a Faraday instability pattern with its flexible boundaries in floating fluid drops

Hydrodynamic instabilities are usually investigated in confined geometries where the resulting spatiotemporal pattern is constrained by the boundary conditions. Here we study the Faraday instability in domains with flexible boundaries. This is implemented by triggering this instability in floating fluid drops. An interaction of Faraday waves with the shape of the drop is observed, the radiation pressure of the waves exerting a force on the surface tension held boundaries. Two regimes are observed. In the first one there is a coadaptation of the wave pattern with the shape of the domain so that a steady configuration is reached. In the second one the radiation pressure dominates and no steady regime is reached. The drop stretches and ultimately breaks into smaller domains that have a complex dynamics including spontaneous propagation.

physics.flu-dyn↗

Self-contact and instabilities in the anisotropic growth of elastic membranes

We investigate the morphology of thin discs and rings growing in the circumferential direction. Recent analytical results suggest that this growth produces symmetric excess cones (e-cones). We study the stability of such solutions considering self-contact and bending stress. We show that, contrary to what was assumed in previous analytical solutions, beyond a critical growth factor, no symmetric \textit{e}-cone solution is energetically minimal any more. Instead, we obtain skewed e-cone solutions having lower energy, characterized by a skewness angle and repetitive spiral winding with increasing growth. These results are generalized to discs with varying thickness and rings with holes of different radii.

physics.bio-ph↗

Conical defects in growing sheets

A growing or shrinking disc will adopt a conical shape, its intrinsic geometry characterized by a surplus angle $se$ at the apex. If growth is slow, the cone will find its equilibrium. Whereas this is trivial if $se <= 0$, the disc can fold into one of a discrete infinite number of states if $se$ is positive. We construct these states in the regime where bending dominates, determine their energies and how stress is distributed in them. For each state a critical value of $se$ is identified beyond which the cone touches itself. Before this occurs, all states are stable; the ground state has two-fold symmetry.

cond-mat.other↗

Morphogenesis of growing soft tissues

Recently, much attention has been given to a noteworthy property of some soft tissues: their ability to grow. Many attempts have been made to model this behaviour in biology, chemistry and physics. Using the theory of finite elasticity, Rodriguez has postulated a multiplicative decomposition of the geometric deformation gradient into a growth-induced part and an elastic one needed to ensure compatibility of the body. In order to fully explore the consequences of this hypothesis, the equations describing thin elastic objects under finite growth are derived. Under appropriate scaling assumptions for the growth rates, the proposed model is of the Foppl-von Karman type. As an illustration, the circumferential growth of a free hyperelastic disk is studied.

q-bio.TO↗

Instabilities in elastomers and soft tissues

Biological soft tissues exhibit elastic properties which can be dramatically different from rubber-type materials (elastomers). To gain a better understanding of the role of constitutive relationships in determining material responses under loads we compare three different types of instabilities (two in compression, one in extension) in hyperelasticity for various forms of strain energy functions typically used for elastomers and for soft tissues. Surprisingly, we find that the strain-hardening property of soft tissues does not always stabilize the material. In particular we show that the stability analyses for a compressed half-space and for a compressed spherical thick shell can lead to opposite conclusions: a soft tissue material is more stable than an elastomer in the former case and less stable in the latter case.

cond-mat.soft↗

Effective creases and contact angles between membrane domains with high spontaneous curvature

We show that the short-scale elastic distortions that are excited in the vicinity of the joint between different lipidic membrane domains (at a scale of \~10 nm) may produce a "crease" from the point of view of the standard elastic description of membranes, i.e., an effective discontinuity in the membrane slope at the level of Helfrich's theory. This "discontinuity" may be accounted for by introducing a line tension with an effective angular dependence. We show that domains bearing strong spontaneous curvatures, such as biological rafts, should exhibit creases with a finite contact-angle, almost prescribed, corresponding to a steep extremum of the line energy. Finite contact-angles might also occur in symmetric membranes from the recruitment of impurities at the boundary.

cond-mat.soft↗

Budding and Fission of a multiphase vesicle

We present a model of bi-phasic vesicle in the limit of large surface tension. In this regime, the vesicle is completely stretched and well described by two spherical caps with a fold which concentrates the membrane stress. The conservation laws and geometric constraints restrict the space of possible shapes to a pair of solutions labeled by a parameter $τ$ given by {\it line tension/pressure}. For a given $τ$ value, the two solutions differ by the length of the interface between domains. For a critical value $τ\_c$, the two vesicle shapes become identical and no solution exists above this critical value. This model sheds new light on two proposed mechanisms (osmotic shocks and molecule absorption) to explain the budding and the fission in recent experiments.

physics.bio-ph↗

Evaporation of a thin film: diffusion of the vapour and Marangoni instabilities

The stability of an evaporating thin liquid film on a solid substrate is investigated within lubrication theory. The heat flux due to evaporation induces thermal gradients; the generated Marangoni stresses are accounted for. Assuming the gas phase at rest, the dynamics of the vapour reduces to diffusion. The boundary condition at the interface couples transfer from the liquid to its vapour and diffusion flux. A non-local lubrication equation is obtained; this non-local nature comes from the Laplace equation associated with quasi-static diffusion. The linear stability of a flat film is studied in this general framework. The subsequent analysis is restricted to moderately thick films for which it is shown that evaporation is diffusion limited and that the gas phase is saturated in vapour in the vicinity of the interface. The stability depends only on two control parameters, the capillary and Marangoni numbers. The Marangoni effect is destabilising whereas capillarity and evaporation are stabilising processes. The results of the linear stability analysis are compared with the experiments of Poulard et al (2003) performed in a different geometry. In order to study the resulting patterns, the amplitude equation is obtained through a systematic multiple-scale expansion. The evaporation rate is needed and is computed perturbatively by solving the Laplace problem for the diffusion of vapour. The bifurcation from the flat state is found to be a supercritical transition. Moreover, it appears that the non-local nature of the diffusion problem unusually affects the amplitude equation.

cond-mat.soft↗

Fission of a multiphase membrane tube

A common mechanism for intracellular transport is the use of controlled deformations of the membrane to create spherical or tubular buds. While the basic physical properties of homogeneous membranes are relatively well-known, the effects of inhomogeneities within membranes are very much an active field of study. Membrane domains enriched in certain lipids in particular are attracting much attention, and in this Letter we investigate the effect of such domains on the shape and fate of membrane tubes. Recent experiments have demonstrated that forced lipid phase separation can trigger tube fission, and we demonstrate how this can be understood purely from the difference in elastic constants between the domains. Moreover, the proposed model predicts timescales for fission that agree well with experimental findings.

physics.bio-ph↗

Bi-Phasic Vesicles: instability induced by adsorption of proteins

The recent discovery of a lateral organization in cell membranes due to small structures called 'rafts' has motivated a lot of biological and physico-chemical studies. A new experiment on a model system has shown a spectacular budding process with the expulsion of one or two rafts when one introduces proteins on the membrane. In this paper, we give a physical interpretation of the budding of the raft phase. An approach based on the energy of the system including the presence of proteins is used to derive a shape equation and to study possible instabilities. This model shows two different situations which are strongly dependent on the nature of the proteins: a regime of easy budding when the proteins are strongly coupled to the membrane and a regime of difficult budding.

q-bio.SC↗

Finger behavior of a shear thinning fluid in a Hele-Shaw cell

We make a theoretical study of the behavior of a simple fluid displacing a shear thinning fluid confined in a Hele-Shaw cell. To study the Saffman-Taylor instability when the displaced fluid is non Newtonian we face the problem of having a field which is non laplacian. By means of an hodographic transformation we are able to solve the problem in the case of weak shear thinning while taking into account the non laplacian character of the equation. Our results predict that the finger width decreases towards zero for small values of the surface tension parameter which is inversely proportional to the finger velocity.

cond-mat.soft↗