arXiv subjects
Publications and source records attributed to Masahico Saito.
A continuous cohomology theory for topological quandles is introduced, and compared to the algebraic theories. Extensions of topological quandles are studied with respect to continuous 2-cocycles, and used to show the differences in second cohomology groups for specific topological quandles. A method of computing the cohomology groups of the inverse limit is applied to quandles.
The knot coloring polynomial defined by Eisermann for a finite pointed group is generalized to an infinite pointed group as the longitudinal mapping invariant of a knot. In turn this can be thought of as a generalization of the quandle 2-cocycle invariant for finite quandles. If the group is a topological group then this invariant can be thought of a topological generalization of the 2-cocycle invariant. The longitudinal mapping invariant is based on a meridian-longitude pair in the knot group. We also give an interpretation of the invariant in terms of quandle colorings of a 1-tangle for generalized Alexander quandles without use of a meridian-longitude pair in the knot group. The invariant values are concretely evaluated for the torus knots $T(2,n)$, their mirror images, and the figure eight knot for the group $SU(2)$.
DNA rearrangement processes recombine gene segments that are organized on the chromosome in a variety of ways. The segments can overlap, interleave or one may be a subsegment of another. We use directed graphs to represent segment organizations on a given locus where contigs containing rearranged segments represent vertices and the edges correspond to the segment relationships. Using graph properties we associate a point in a higher dimensional Euclidean space to each graph such that cluster formations and analysis can be performed with methods from topological data analysis. The method is applied to a recently sequenced model organism \textit{Oxytricha trifallax}, a species of ciliate with highly scrambled genome that undergoes massive rearrangement process after conjugation. The analysis shows some emerging star-like graph structures indicating that segments of a single gene can interleave, or even contain all of the segments from fifteen or more other genes in between its segments. We also observe that as many as six genes can have their segments mutually interleaving or overlapping.
We prove that the coefficients of the colored Jones polynomial of alternating links stabilize under increasing the number of twists in the twist regions of the link diagram. This gives us an infinite family of $q$-power series derived from the colored Jones polynomial parametrized by the color and the twist regions of the alternating link diagram.
We explore a knot invariant derived from colorings of corresponding $1$-tangles with arbitrary connected quandles. When the quandle is an abelian extension of a certain type the invariant is equivalent to the quandle $2$-cocycle invariant. We construct many such abelian extensions using generalized Alexander quandles without explicitly finding $2$-cocycles. This permits the construction of many $2$-cocycle invariants without exhibiting explicit $2$-cocycles. We show that for connected generalized Alexander quandles the invariant is equivalent to Eisermann's knot coloring polynomial. Computations using this technique show that the $2$-cocycle invariant distinguishes all of the oriented prime knots up to 11 crossings and most oriented prime knots with 12 crosssings including classification by symmetry: mirror images, reversals, and reversed mirrors.
Quandle 2-cocycles define invariants of classical and virtual knots, and extensions of quandles. We show that the quandle 2-cocycle invariant with respect to a non-trivial $2$-cocycle is constant, or takes some other restricted form, for classical knots when the corresponding extensions satisfy certain algebraic conditions. In particular, if an abelian extension is a conjugation quandle, then the corresponding cocycle invariant is constant. Specific examples are presented from the list of connected quandles of order less than 48. Relations among various quandle epimorphisms involved are also examined.
Quandle homology was defined from rack homology as the quotient by a subcomplex corresponding to the idempotency, for invariance under the type I Reidemeister move. Similar subcomplexes have been considered for various identities of racks and moves on diagrams. We observe common aspects of these identities and subcomplexes; a quandle identity gives rise to a $2$-cycle, the abelian extension with a $2$-cocycle that vanishes on the $2$-cycle inherits the identity, and a subcomplex is constructed from the identity. Specific identities are examined among small connected quandles.
A quandle is a set that has a binary operation satisfying three conditions corresponding to the Reidemeister moves. Homology theories of quandles have been developed in a way similar to group homology, and have been applied to knots and knotted surfaces. In this paper, a homology theory is defined that unifies group and quandle homology theories. A quandle that is a union of groups with the operation restricting to conjugation on each group component is called a multiple conjugation quandle (MCQ, defined rigorously within). In this definition, compatibilities between the group and quandle operations are imposed which are motivated by considerations on colorings of handlebody-links. A homology theory defined here for MCQs take into consideration both group and quandle operations, as well as their compatibility. The first homology group is characterized, and the notion of extensions by $2$-cocycles is provided. Degenerate subcomplexes are defined in relation to simplicial decompositions of prismatic (products of simplices) complexes and group inverses. Cocycle invariants are also defined for handlebody-links.
A chord diagram consists of a circle, called the backbone, with line segments, called chords, whose endpoints are attached to distinct points on the circle. The genus of a chord diagram is the genus of the orientable surface obtained by thickening the backbone to an annulus and attaching bands to the inner boundary circle at the ends of each chord. Variations of this construction are considered here, where bands are possibly attached to the outer boundary circle of the annulus. The genus range of a chord diagram is the genus values over all such variations of surfaces thus obtained from a given chord diagram. Genus ranges of chord diagrams for a fixed number of chords are studied. Integer intervals that can, and cannot, be realized as genus ranges are investigated. Computer calculations are presented, and play a key role in discovering and proving the properties of genus ranges.
We present a set of 26 finite quandles that distinguish (up to reversal and mirror image) by number of colorings, all of the 2977 prime oriented knots with up to 12 crossings. We also show that 1058 of these knots can be distinguished from their mirror images by the number of colorings by quandles from a certain set of 23 finite quandles. We study the colorings of these 2977 knots by all of the 431 connected quandles of order at most 35 found by L. Vendramin. Among other things, we collect information about quandles that have the same number of colorings for all of the 2977 knots. For example, we prove that if $Q$ is a simple quandle of prime power order then $Q$ and the dual quandle $Q^*$ of $Q$ have the same number of colorings for all knots and conjecture that this holds for all Alexander quandles $Q$. We study a knot invariant based on a quandle homomorphism $f:Q_1\to Q_0$. We also apply the quandle colorings we have computed to obtain some new results for the bridge index, the Nakanishi index, the tunnel number, and the unknotting number. In an appendix we discuss various properties of the quandles in Vendramin's list. Links to the data computed and various programs in C, GAP and Maple are provided.
We introduce a notion of genus range as a set of values of genera over all surfaces into which a graph is embedded cellularly, and we study the genus ranges of a special family of four-regular graphs with rigid vertices that has been used in modeling homologous DNA recombination. We show that the genus ranges are sets of consecutive integers. For any positive integer $n$, there are graphs with $2n $ vertices that have genus range ${m,m+1,...,m'}$ for all $0\le m<m'\le n$, and there are graphs with $2n-1$ vertices with genus range ${m,m+1,...,m'}$ for all $0\le m<m' <n$ or $0<m<m'\le n$. Further, we show that for every $n$ there is $k<n$ such that ${h}$ is a genus range for graphs with $2n-1$ and $2n$ vertices for all $h\le k$. It is also shown that for every $n$, there is a graph with $2n$ vertices with genus range ${0,1,...,n}$, but there is no such a graph with $2n-1$ vertices.
A quandle is a self-distributive algebraic structure that appears in quasi-group and knot theories. For each abelian group A and c \in A we define a quandle G(A, c) on \Z_3 \times A. These quandles are generalizations of a class of non-medial Latin quandles defined by V. M. Galkin so we call them Galkin quandles. Each G(A, c) is connected but not Latin unless A has odd order. G(A, c) is non-medial unless 3A = 0. We classify their isomorphism classes in terms of pointed abelian groups, and study their various properties. A family of symmetric connected quandles is constructed from Galkin quandles, and some aspects of knot colorings by Galkin quandles are also discussed.
Foams are surfaces with branch lines at which three sheets merge. They have been used in the categorification of sl(3) quantum knot invariants and also in physics. The 2D-TQFT of surfaces, on the other hand, is classified by means of commutative Frobenius algebras, where saddle points correspond to multiplication and comultiplication. In this paper, we explore algebraic operations that branch lines derive under TQFT. In particular, we investigate Lie bracket and bialgebra structures. Relations to the original Frobenius algebra structures are discussed both algebraically and diagrammatically.
Quandles with involutions that satisfy certain conditions, called good involutions, can be used to color non-orientable surface-knots. We use subgroups of signed permutation matrices to construct non-trivial good involutions on extensions of odd order dihedral quandles. For the smallest example of order 6 that is an extension of the three-element dihedral quandle, various symmetric quandle homology groups are computed, and applications to the minimal triple point number of surface-knots are given.
An algebraic system is proposed that represent surface cobordisms in thickened surfaces. Module and comodule structures over Frobenius algebras are used for representing essential curves. The proposed structure gives a unified algebraic view of states of categorified Jones polynomials in thickened surfaces and virtual knots. Constructions of such system are presented.
Relations will be described between the quandle cocycle invariant and the minimal number of colors used for non-trivial Fox colorings of knots and links. In particular, a lower bound for the minimal number is given in terms of the quandle cocycle invariant.
For an arbitrary identity L=R between compositions of maps L and R on tensors of vector spaces V, a general construction of a 2-cocycle condition is given. These 2-cocycles correspond to those obtained in deformation theories of algebras. The construction is applied to a canceling pairings and copairings, with explicit examples with calculations. Relations to the Kauffman bracket and knot invariants are discussed.
A cohomology theory for multiplications and comultiplications of Frobenius algebras is developed in low dimensions in analogy with Hochschild cohomology of bialgebras based on deformation theory. Concrete computations are provided for key examples. Skein theoretic constructions give rise to solutions to the Yang-Baxter equation using multiplications and comultiplications of Frobenius algebras, and 2-cocycles are used to obtain deformations of R-matrices thus obtained.