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Masaki Adachi

Publications and source records attributed to Masaki Adachi.

At least 19 recordsLinked to original sources

Verbalizing LLM's Higher-order Uncertainty via Imprecise Probabilities

Despite the growing demand for eliciting uncertainty from large language models (LLMs), empirical evidence suggests that LLM behavior is not always adequately captured by the elicitation techniques developed under the classical probabilistic uncertainty framework. This mismatch leads to systematic failure modes, particularly in settings that involve ambiguous question-answering, in-context learning, and self-reflection. To address this, we propose novel prompt-based uncertainty elicitation techniques grounded in \emph{imprecise probabilities}, a principled framework for repesenting and eliciting higher-order uncertainty. Here, first-order uncertainty captures uncertainty over possible responses to a prompt, while second-order uncertainty (uncertainty about uncertainty) quantifies indeterminacy in the underlying probability model itself. We introduce general-purpose prompting and post-processing procedures to directly elicit and quantify both orders of uncertainty, and demonstrate their effectiveness across diverse settings. Our approach enables more faithful uncertainty reporting from LLMs, improving credibility and supporting downstream decision-making.

cs.AI

Generalised Robust Bayes for Joint Inference of Model and Contamination

Generalised Bayesian inference (GBI) has emerged as a compelling robust alternative to standard Bayesian inference, mitigating sensitivity to data contamination by replacing the log-likelihood with a robust loss or divergence. However, existing robust GBI frameworks typically provide only qualitative robustness: while they can make posterior inference less sensitive to contamination, they lack an intrinsic mechanism to quantify the contamination proportion or identify anomalous observations. This paper introduces Hölder-Bayes, a GBI framework for joint inference of the model parameter and the contamination proportion. We construct a generalised joint posterior over both model and contamination parameter by applying the Hölder divergence to a scaled model density. Theoretically, we establish global bias-robustness via the uniform boundedness of the posterior influence function, derive a finite-sample excess-risk bound, and prove a Bernstein--von Mises approximation together with interpretable contamination-induced bias bounds under a heavy-contamination regime. We further show that, for the Hölder posterior, temperature calibration admits a direct interpretation as affine volume scaling of the data space. The resulting posterior yields a self-contained probabilistic mechanism for outlier detection: posterior uncertainty in both the model parameter and the contamination proportion is propagated to observation-level Frequency-of-Detection scores, without requiring an external anomaly-score threshold. Empirical evaluations demonstrate that Hölder-Bayes provides robust parameter inference, contamination-level recovery, and uncertainty-aware outlier detection.

stat.ME

LLM-Guided Test-Time Discovery of Quantum-Chemical Approximation Algorithms

Quantum chemistry simulations underpin modern materials discovery, yet their impact is limited by steep computational cost and dependence on fixed approximation schemes. Foundation models, such as machine-learned interatomic potentials, have accelerated parts of this workflow, but their reliance on large-scale pretraining restricts adaptability at the frontier of chemical space, where methodological innovation and sparse data are the norm. Agentic AI systems can automate existing simulation pipelines, yet they remain constrained by the predefined tools and algorithms they orchestrate. In response, we introduce LADeQ, an LLM-guided workflow that discovers, implements, and benchmarks candidate approximation algorithms at test-time within existing quantum chemistry codes. Rather than selecting from a predefined repertoire, LADeQ constructs candidate approximation schemes on demand, drawing on techniques from disciplines such as spatial statistics, circuit simulation, and kernel methods that have had little prior presence in electronic-structure theory. Because it builds on an out-of-the-box language model, LADeQ requires no task-specific pretraining or curated data, and the resulting implementations are transparent and inspectable, with explicitly traceable approximation errors that enable principled control of accuracy--efficiency trade-offs. We show that LADeQ accelerates coupled cluster singles and doubles (CCSD) and configuration interaction singles and doubles (CISD) calculations while keeping correlation-energy errors within user-specified tolerances, demonstrating autonomous, objective-driven discovery of approximation algorithms inside existing electronic-structure solvers.

physics.chem-ph

LapidaryEngine: Fully Conversational Crystal Generation

The emergence of Large Language Models (LLMs) has inspired the vision of generating bespoke crystal materials directly from natural-language instructions, enabling users to design materials through intuitive, conversational interaction. Existing text-to-crystal generative models represent important early steps toward this goal, but they suffer from two critical limitations: (i) restricted input formats that require highly structured descriptions (e.g., chemical formulas), and (ii) one-directional generation, where models can map text to crystal but cannot perform the inverse. These limitations prevent fully conversational workflows and hinder alignment with users' inherently ambiguous and evolving desiderata. We address these challenges with LapidaryEngine, the first model to support fully conversational crystal generation. LapidaryEngine accepts free-form natural-language requests and performs iterative refinement and editing in a dialogue-like manner. The key innovation is a pivot representation, a third, intermediate form that enables bidirectional translation between text and crystal structures despite the absence of direct paired datasets. Leveraging this pivot allows robust interpretation of user feedback and precise structural control. We demonstrate LapidaryEngine across diverse tasks, including insulator discovery, stability optimization, compositional modification, and structural editing, showcasing its ability to align generated materials with user intent in an interactive manner.

cs.LG

Regret Analysis of Guided Diffusion for Black-Box Optimization over Structured Inputs

Guided-diffusion black-box optimization (BO) has shown strong empirical performance on structured design problems such as molecules and crystals, but its regret behavior remains poorly understood. Existing BO regret analyses typically rely on maximum information gain, non-pretrained surrogate models, or exact acquisition maximization -- assumptions that break down in modern diffusion -- BO pipelines, where pretrained diffusion models serve as powerful priors over valid structures and acquisition maximization is replaced by approximate sampling over astronomically large discrete spaces. We develop a first certificate-based expected simple-regret framework for guided-diffusion BO that avoids maximum-information-gain bounds, RKHS assumptions, and exact acquisition maximization. The central quantity in our analysis is mass lift: the increase in probability mass assigned to near-optimal designs relative to the pretrained generator. This view explains how exponential-looking finite-budget convergence and polynomial acceleration can all arise from the same mechanism. We also give practical diagnostics for estimating search exponents from finite candidate pools and a proposal-corrected resampling construction that provides a fully certified sampler instance.

stat.ML

Open-Ended Task Discovery via Bayesian Optimization

When applying Bayesian optimization (BO) to scientific workflow, a major yet often overlooked source of uncertainty is the task itself -- namely, what to optimize and how to evaluate it -- which can evolve as evidence accumulates. We introduce Generate-Select-Refine (GSR), a open-ended BO framework that alternates between task generation and task optimization. Starting from a user-provided seed task, GSR generates new tasks in a coarse-to-fine manner while a task-acquisition function schedules optimization. Asymptotically, it concentrates evaluations on the best task, incurring only logarithmic regret overhead relative to single-task BO. We apply GSR to new product development, chemical synthesis scaling, algorithm analysis, and patent repurposing, where it outperforms existing LLM-based optimizers.

cs.AI

A Primer on Bayesian Parameter Estimation and Model Selection for Battery Simulators

Physics-based battery modelling has emerged to accelerate battery materials discovery and performance assessment. Its success, however, is still hindered by difficulties in aligning models to experimental data. Bayesian approaches are a valuable tool to overcome these challenges, since they enable prior assumptions and observations to be combined in a principled manner that improves numerical conditioning. Here we introduce two new algorithms to the battery community, SOBER and BASQ, that greatly speed up Bayesian inference for parameterisation and model comparison. We showcase how Bayesian model selection allows us to tackle data observability, model identifiability, and data-informed model development together. We propose this approach for the search for battery models of novel materials.

stat.ME

Scalable Valuation of Human Feedback through Provably Robust Model Alignment

Despite the importance of aligning language models with human preferences, crowd-sourced human feedback is often noisy -- for example, preferring less desirable responses -- posing a fundamental challenge to alignment. A truly robust alignment objective should yield identical model parameters even under severe label noise, a property known as redescending. We prove that no existing alignment methods satisfy this property. To address this, we propose Hölder-DPO, the first principled alignment loss with a provable redescending property, enabling estimation of the clean data distribution from noisy feedback. The aligned model estimates the likelihood of clean data, providing a theoretically grounded metric for dataset valuation that identifies the location and fraction of mislabels. This metric is gradient-free, enabling scalable and automated human feedback valuation without costly manual verification or clean validation dataset. Hölder-DPO achieves state-of-the-art robust alignment performance while accurately detecting mislabels in controlled datasets. Finally, applied to Anthropic HH-RLHF dataset, it reveals substantial noise levels and removing these mislabels significantly improves alignment performance across methods. The code is available at https://github.com/ma921/HolderDPO.

cs.LG

Fixing the Pitfalls of Probabilistic Time-Series Forecasting Evaluation by Kernel Quadrature

Despite the significance of probabilistic time-series forecasting models, their evaluation metrics often involve intractable integrations. The most widely used metric, the continuous ranked probability score (CRPS), is a strictly proper scoring function; however, its computation requires approximation. We found that popular CRPS estimators--specifically, the quantile-based estimator implemented in the widely used GluonTS library and the probability-weighted moment approximation--both exhibit inherent estimation biases. These biases lead to crude approximations, resulting in improper rankings of forecasting model performance when CRPS values are close. To address this issue, we introduced a kernel quadrature approach that leverages an unbiased CRPS estimator and employs cubature construction for scalable computation. Empirically, our approach consistently outperforms the two widely used CRPS estimators.

stat.ML

Natural Evolutionary Search meets Probabilistic Numerics

Zeroth-order local optimisation algorithms are essential for solving real-valued black-box optimisation problems. Among these, Natural Evolution Strategies (NES) represent a prominent class, particularly well-suited for scenarios where prior distributions are available. By optimising the objective function in the space of search distributions, NES algorithms naturally integrate prior knowledge during initialisation, making them effective in settings such as semi-supervised learning and user-prior belief frameworks. However, due to their reliance on random sampling and Monte Carlo estimates, NES algorithms can suffer from limited sample efficiency. In this paper, we introduce a novel class of algorithms, termed Probabilistic Natural Evolutionary Strategy Algorithms (ProbNES), which enhance the NES framework with Bayesian quadrature. We show that ProbNES algorithms consistently outperforms their non-probabilistic counterparts as well as global sample efficient methods such as Bayesian Optimisation (BO) or $π$BO across a wide range of tasks, including benchmark test functions, data-driven optimisation tasks, user-informed hyperparameter tuning tasks and locomotion tasks.

cs.LG

BASIL: Fast broadband line-rich spectral-cube fitting and image visualization via Bayesian quadrature

Mapping the spatial distributions and abundances of complex organic molecules in hot cores and hot corinos is crucial for understanding the astrochemical pathways and the inheritance of prebiotic material by nascent planetary systems. However, the line-rich spectra from these sources pose significant challenges for robustly fitting molecular parameters due to severe line blending and unidentified lines. We present an efficient framework, Bayesian Active Spectral-cube Inference and Learning (BASIL), for estimating molecular parameter maps for hundreds of molecules based on the local thermodynamic equilibrium (LTE) model, applied to wideband spectral datacubes of line-rich sources. We adopted stochastic variational inference to infer molecular parameters from spectra at individual positions, balancing between fitting accuracy and computational speed. For obtaining parameter maps, instead of querying every location or pixel, we introduced an active learning framework based on Bayesian quadrature and its parallelization. Specifically, we assessed and selected the locations or pixels of spectrum that are most informative for estimating the entire set of parameter maps by training a Gaussian processes model. By greedily selecting locations with maximum information gain, we achieve sublinear convergence. We benchmarked BASIL on a large synthetic datacube and demonstrated that it produces accurate 468 molecular parameter maps from 117 molecules within ~180 hours, orders of magnitude faster than traditional pixel-by-pixel fitting using Markov chain Monte Carlo methods, with visually reliable results emerging in just ~20 hours. Additional training iterations provide progressively more accurate results. This quick visualization meets the demands of big data in modern astronomical surveys.

astro-ph.GA

Time-Varying Gaussian Process Bandits with Unknown Prior

Bayesian optimisation requires fitting a Gaussian process model, which in turn requires specifying prior on the unknown black-box function -- most of the theoretical literature assumes this prior is known. However, it is common to have more than one possible prior for a given black-box function, for example suggested by domain experts with differing opinions. In some cases, the type-II maximum likelihood estimator for selecting prior enjoys the consistency guarantee, but it does not universally apply to all types of priors. If the problem is stationary, one could rely on the Regret Balancing scheme to conduct the optimisation, but in the case of time-varying problems, such a scheme cannot be used. To address this gap in existing research, we propose a novel algorithm, PE-GP-UCB, which is capable of solving time-varying Bayesian optimisation problems even without the exact knowledge of the function's prior. The algorithm relies on the fact that either the observed function values are consistent with some of the priors, in which case it is easy to reject the wrong priors, or the observations are consistent with all candidate priors, in which case it does not matter which prior our model relies on. We provide a regret bound on the proposed algorithm. Finally, we empirically evaluate our algorithm on toy and real-world time-varying problems and show that it outperforms the maximum likelihood estimator, fully Bayesian treatment of unknown prior and Regret Balancing.

cs.LG

Bayesian Optimization for Building Social-Influence-Free Consensus

We introduce Social Bayesian Optimization (SBO), a vote-efficient algorithm for consensus-building in collective decision-making. In contrast to single-agent scenarios, collective decision-making encompasses group dynamics that may distort agents' preference feedback, thereby impeding their capacity to achieve a social-influence-free consensus -- the most preferable decision based on the aggregated agent utilities. We demonstrate that under mild rationality axioms, reaching social-influence-free consensus using noisy feedback alone is impossible. To address this, SBO employs a dual voting system: cheap but noisy public votes (e.g., show of hands in a meeting), and more accurate, though expensive, private votes (e.g., one-to-one interview). We model social influence using an unknown social graph and leverage the dual voting system to efficiently learn this graph. Our theoretical findigns show that social graph estimation converges faster than the black-box estimation of agents' utilities, allowing us to reduce reliance on costly private votes early in the process. This enables efficient consensus-building primarily through noisy public votes, which are debiased based on the estimated social graph to infer social-influence-free feedback. We validate the efficacy of SBO across multiple real-world applications, including thermal comfort, team building, travel negotiation, and energy trading collaboration.

cs.MA

Learning to Forget: Bayesian Time Series Forecasting using Recurrent Sparse Spectrum Signature Gaussian Processes

The signature kernel is a kernel between time series of arbitrary length and comes with strong theoretical guarantees from stochastic analysis. It has found applications in machine learning such as covariance functions for Gaussian processes. A strength of the underlying signature features is that they provide a structured global description of a time series. However, this property can quickly become a curse when local information is essential and forgetting is required; so far this has only been addressed with ad-hoc methods such as slicing the time series into subsegments. To overcome this, we propose a principled, data-driven approach by introducing a novel forgetting mechanism for signatures. This allows the model to dynamically adapt its context length to focus on more recent information. To achieve this, we revisit the recently introduced Random Fourier Signature Features, and develop Random Fourier Decayed Signature Features (RFDSF) with Gaussian processes (GPs). This results in a Bayesian time series forecasting algorithm with variational inference, that offers a scalable probabilistic algorithm that processes and transforms a time series into a joint predictive distribution over time steps in one pass using recurrence. For example, processing a sequence of length $10^4$ steps in $\approx 10^{-2}$ seconds and in $< 1\text{GB}$ of GPU memory. We demonstrate that it outperforms other GP-based alternatives and competes with state-of-the-art probabilistic time series forecasting algorithms.

stat.ML

Bayesian Optimisation with Unknown Hyperparameters: Regret Bounds Logarithmically Closer to Optimal

Bayesian Optimization (BO) is widely used for optimising black-box functions but requires us to specify the length scale hyperparameter, which defines the smoothness of the functions the optimizer will consider. Most current BO algorithms choose this hyperparameter by maximizing the marginal likelihood of the observed data, albeit risking misspecification if the objective function is less smooth in regions we have not yet explored. The only prior solution addressing this problem with theoretical guarantees was A-GP-UCB, proposed by Berkenkamp et al. (2019). This algorithm progressively decreases the length scale, expanding the class of functions considered by the optimizer. However, A-GP-UCB lacks a stopping mechanism, leading to over-exploration and slow convergence. To overcome this, we introduce Length scale Balancing (LB) - a novel approach, aggregating multiple base surrogate models with varying length scales. LB intermittently adds smaller length scale candidate values while retaining longer scales, balancing exploration and exploitation. We formally derive a cumulative regret bound of LB and compare it with the regret of an oracle BO algorithm using the optimal length scale. Denoting the factor by which the regret bound of A-GP-UCB was away from oracle as $g(T)$, we show that LB is only $\log g(T)$ away from oracle regret. We also empirically evaluate our algorithm on synthetic and real-world benchmarks and show it outperforms A-GP-UCB, maximum likelihood estimation and MCMC.

stat.ML

Demonstrating Linked Battery Data To Accelerate Knowledge Flow in Battery Science

Batteries are pivotal for transitioning to a climate-friendly future, leading to a surge in battery research. Scopus (Elsevier) lists 14,388 papers that mention "lithium-ion battery" in 2023 alone, making it infeasible for individuals to keep up. This paper discusses strategies based on structured, semantic, and linked data to manage this information overload. Structured data follows a predefined, machine-readable format; semantic data includes metadata for context; linked data references other semantic data, forming a web of interconnected information. We use a battery-related ontology, BattINFO to standardise terms and enable automated data extraction and analysis. Our methodology integrates full-text search and machine-readable data, enhancing data retrieval and battery testing. We aim to unify commercial cell information and develop tools for the battery community such as manufacturer-independent cycling procedure descriptions and external memory for Large Language Models. Although only a first step, this approach significantly accelerates battery research and digitalizes battery testing, inviting community participation for continuous improvement. We provide the structured data and the tools to access them as open source.

cs.IR

Principled Bayesian Optimisation in Collaboration with Human Experts

Bayesian optimisation for real-world problems is often performed interactively with human experts, and integrating their domain knowledge is key to accelerate the optimisation process. We consider a setup where experts provide advice on the next query point through binary accept/reject recommendations (labels). Experts' labels are often costly, requiring efficient use of their efforts, and can at the same time be unreliable, requiring careful adjustment of the degree to which any expert is trusted. We introduce the first principled approach that provides two key guarantees. (1) Handover guarantee: similar to a no-regret property, we establish a sublinear bound on the cumulative number of experts' binary labels. Initially, multiple labels per query are needed, but the number of expert labels required asymptotically converges to zero, saving both expert effort and computation time. (2) No-harm guarantee with data-driven trust level adjustment: our adaptive trust level ensures that the convergence rate will not be worse than the one without using advice, even if the advice from experts is adversarial. Unlike existing methods that employ a user-defined function that hand-tunes the trust level adjustment, our approach enables data-driven adjustments. Real-world applications empirically demonstrate that our method not only outperforms existing baselines, but also maintains robustness despite varying labelling accuracy, in tasks of battery design with human experts.

cs.LG

A Quadrature Approach for General-Purpose Batch Bayesian Optimization via Probabilistic Lifting

Parallelisation in Bayesian optimisation is a common strategy but faces several challenges: the need for flexibility in acquisition functions and kernel choices, flexibility dealing with discrete and continuous variables simultaneously, model misspecification, and lastly fast massive parallelisation. To address these challenges, we introduce a versatile and modular framework for batch Bayesian optimisation via probabilistic lifting with kernel quadrature, called SOBER, which we present as a Python library based on GPyTorch/BoTorch. Our framework offers the following unique benefits: (1) Versatility in downstream tasks under a unified approach. (2) A gradient-free sampler, which does not require the gradient of acquisition functions, offering domain-agnostic sampling (e.g., discrete and mixed variables, non-Euclidean space). (3) Flexibility in domain prior distribution. (4) Adaptive batch size (autonomous determination of the optimal batch size). (5) Robustness against a misspecified reproducing kernel Hilbert space. (6) Natural stopping criterion.

cs.LG