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Matej Daniel

Publications and source records attributed to Matej Daniel.

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Quaternion-Based Predictive Framework for Scapulohumeral Coordination

Scapulohumeral rhythm (SHR), the coordinated motion between the scapula and humerus during arm elevation, is frequently altered in rotator cuff pathologies, yet the mechanical principles underlying coordination redistribution remain difficult to explain from experimental data alone. This study presents a predictive optimal control framework for investigating scapulohumeral coordination, combining a quaternion-based shoulder model with EMG-informed muscle parameter calibration. The quaternion formulation eliminated kinematic singularities and associated non-physiological activation artifacts observed in the Euler-angle model, while maintaining comparable tracking accuracy. EMG-informed calibration reduced discrepancies between predicted and measured muscle excitations by up to 60% on independent validation tasks. In predictive simulations where only thoracohumeral elevation was prescribed, scapular and clavicular kinematics emerged from musculoskeletal mechanics and minimization of muscular effort, producing SHR values consistent with established experimental ranges. Simulated rotator cuff deficiency resulted in increased reliance on glenohumeral rotation. The proposed framework may serve as a tool for understanding impaired coordination patterns across a broad range of shoulder pathologies, with potential to inform personalized rehabilitation strategies and the design of assistive and prosthetic devices.

physics.med-ph

Calculation of a force effect from muscle action to a quaternion-based musculoskeletal model

Euler angle representation in biomechanical analysis allows straightforward description of joints rotations. However, application of Euler angles could be limited due to singularity called gimbal lock. Quaternions offer an alternative way to describe rotations but they have been mostly avoided in biomechanics as they are complex and not inherently intuitive, specifically in dynamic models actuated by muscles. This study introduces a mathematical framework for describing muscle actions in dynamic quaternion-based musculoskeletal simulations. The proposed method estimates muscle torques in quaternion-based musculoskeletal model. Its application is shown on three-dimensional double-pendulum system actuated by muscle elements. Furthermore, transformation of muscle moment arms obtained from muscle paths based on Euler angles into quaternions description is presented. The proposed method is advantageous for dynamic modeling of musculoskeletal models with complex kinematics and large range of motion like the shoulder joint.

physics.med-ph

Optimal surface topography for cell adhesion is driven by cell membrane mechanics

Titanium surface treated with titanium oxide nanotubes was used in many studies to quantify the effect of surface topography on cell fate. However, the predicted optimal diameter of nanotubes considerably differs among studies. We propose a model that explain cell adhesion to nanostructured surface by considering deformation energy of cell protrusions into titanium nanotubes and adhesion to surface. The optimal surface topology is defined as a geometry that gives membrane a minimum energy shape. A dimensionless parameter, the cell interaction index, was proposed to describe interplay between the cell membrane bending, intrinsic curvature and strength of cell adhesion. Model simulation show that optimal nanotube diameter ranging from 20 nm to 100 nm (cell interaction index between 0.2 and 1, respectively) is feasible within certain range of parameters describing adhesion and bending energy. The results indicates a possibility to tune the topology of nanostructural surface in order to enhance proliferation and differentation of cells mechanically compatible with given surface geometry while suppress the growth of other mechanically incompatible cells.

q-bio.CB